Nucleotide Global Alignment

Description

Query:
TRCN0000487785
Subject:
XM_011248221.2
Aligned Length:
2696
Identities:
1953
Gaps:
514

Alignment

Query    1  ATGCGTAAAGGGGTGCTGAAGGACCCAGAGATTGCCGATCTATTCTACAAAGATGATCCTGAGGAACTTTTTAT  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  TGGTTTGCATGAAATTGGACATGGAAGTTTTGGAGCAGTTTATTTTGCTACAAATGCTCACACCAATGAGGTGG  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  TGGCAATTAAGAAGATGTCCTATAGTGGGAAGCAGACCCATGAGAAATGGCAAGATATTCTTAAGGAAGTTAAA  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  TTTTTACGACAATTGAAGCATCCTAATACTATTGAGTACAAAGGCTGTTACTTGAAAGAACACACTGCTTGGTT  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  GGTGATGGAATATTGCTTAGGCTCAGCCTCTGATTTATTAGAAGTTCATAAAAAACCACTTCAGGAAGTGGAGA  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  TCGCTGCCATTACTCATGGAGCCTTGCATGGACTAGCCTACCTACATTCTCATGCATTGATTCATAGGGATATT  444
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  445  AAAGCAGGAAATATTCTTCTAACAGAGCCAGGTCAGGTAAAACTAGCTGATTTTGGATCTGCTTCAATGGCTTC  518
                                                                              ||||||||
Sbjct    1  ------------------------------------------------------------------ATGGCTTC  8

Query  519  TCCTGCCAACTCCTTCGTGGGCACACCTTACTGGATGGCTCCAGAGGTGATCTTAGCTATGGATGAAGGACAGT  592
            |||.|||||||||||.|||||.||.||||||||||||||.||||||||.||||||||||||||.|||||.||||
Sbjct    9  TCCCGCCAACTCCTTTGTGGGGACTCCTTACTGGATGGCCCCAGAGGTAATCTTAGCTATGGACGAAGGGCAGT  82

Query  593  ATGATGGGAAAGTTGATATTTGGTCACTTGGCATCACTTGTATTGAATTGGCGGAACGGAAGCCGCCCCTTTTC  666
            |.||.|||||||||||.||.|||||.|||||||||||.||.||.||.||||||||.||||||||.|||||.|||
Sbjct   83  ACGACGGGAAAGTTGACATCTGGTCGCTTGGCATCACCTGCATAGAGTTGGCGGAGCGGAAGCCCCCCCTCTTC  156

Query  667  AACATGAATGCAATGAGTGCCTTATATCACATTGCCCAGAATGACTCCCCAACGTTACAGTCTAATGAATGGAC  740
            ||||||||.||.|||||.|||.|.||.|||||.||.||||||||||||||.|||.|||||||.|..||||||||
Sbjct  157  AACATGAACGCCATGAGCGCCCTCTACCACATCGCTCAGAATGACTCCCCCACGCTACAGTCCAGGGAATGGAC  230

Query  741  AGACTCCTTTAGGAGATTTGTTGATTACTGCTTGCAGAAAATACCTCAGGAAAGGCCAACATCAGCAGAACTAT  814
            |||||||||.||||||||.|||||||||||||||||.|||||||||||||||||.|||.|..|.|..||.||.|
Sbjct  231  AGACTCCTTCAGGAGATTCGTTGATTACTGCTTGCACAAAATACCTCAGGAAAGACCAGCCGCGGTGGAGCTGT  304

Query  815  TAAGGCATGACTTTGTTCGACGAGACCGGCCACTACG--TGTCCTCATTGACCTCATACAGAGGACAAAAGATG  886
            |..||||||||||..||||..|.||.|||||||  ||  .|||||||||||.||||||||||||||||||||||
Sbjct  305  TGCGGCATGACTTCATTCGGAGGGAGCGGCCAC--CGAAGGTCCTCATTGATCTCATACAGAGGACAAAAGATG  376

Query  887  CAGTTCGTGAGCTAGATAACCTACAGTACCGAAAAATGAAAAAAATACTTTTCCAAGAGACACGGAATGGACCC  960
            |.||.||.|||||.||.|||||.||||||.|.||||||||.||.||.||.|||||.|||||.|||||.||||||
Sbjct  377  CTGTCCGAGAGCTGGACAACCTGCAGTACAGGAAAATGAAGAAGATCCTCTTCCAGGAGACTCGGAACGGACCC  450

Query  961  TTGAATGAGTCACAGGAGGATGAGGAAGACAGTGAACATGGAACCAGCCTGAACAGGGAAATGGACAGCCTGGG  1034
            |||||||||||.||.||.||.||.|||||..||||.||.||||.||.|||||||.|.||..|||||||.|||||
Sbjct  451  TTGAATGAGTCGCAAGAAGAAGAAGAAGATGGTGAGCAAGGAAGCAACCTGAACCGAGAGGTGGACAGTCTGGG  524

Query 1035  CAGCAACCATTCCATTCCAAGCATGTCCGTGAGCACAGGCAGCCAGAGCAGCAGTGTGAACAGCATGCAGGAAG  1108
            |||||.|||.||||||||.||||..||.||||||||||||||||.|||||||||||||||||||||||||||.|
Sbjct  525  CAGCATCCACTCCATTCCCAGCACATCAGTGAGCACAGGCAGCCGGAGCAGCAGTGTGAACAGCATGCAGGAGG  598

Query 1109  TCATGGACGAGAGCAGTTCCGAACTTGTCATGATGCACGATGACGAAAGCACAATCAATTCCAGCTCCTCCGTC  1182
            |||||||.||||||||.||.||.||.|||||||||||.||.||.|||.|||||..|||.||||||.|||||...
Sbjct  599  TCATGGATGAGAGCAGCTCTGAGCTCGTCATGATGCAGGAGGATGAAGGCACAGCCAACTCCAGCGCCTCCACG  672

Query 1183  GTGCATAAGAAAGATCATGTATTCATAAGGGATGAGGCGGGCCACGGCAATCCCAGGCCTGAGCCGCGGCCTAC  1256
            ||.||.|||||.||||||||||||.|||||||||||||||||||||||.|||||||||||||||||||||||||
Sbjct  673  GTACACAAGAAGGATCATGTATTCGTAAGGGATGAGGCGGGCCACGGCGATCCCAGGCCTGAGCCGCGGCCTAC  746

Query 1257  CCAGTCAGTTCAGAGCCAGGCCCTCCACTACCGGAACAGAGAGCGCTTTGCCACGATCAAATCAGCATCTTTGG  1330
            |||||||||||||||||.||||||||||||.||||||.|||||||||||||||||||||||||.||.|||||||
Sbjct  747  CCAGTCAGTTCAGAGCCGGGCCCTCCACTATCGGAACCGAGAGCGCTTTGCCACGATCAAATCCGCGTCTTTGG  820

Query 1331  TTACACGACAGATCCATGAGCATGAGCAGGAGAACGAGTTGCGGGAACAGATGTCAGGTTATAAGCGGATGCGG  1404
            |||||||.||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||
Sbjct  821  TTACACGGCAGATCCATGAGCATGAGCAGGAGAACGAGCTGCGGGAACAGATGTCAGGTTATAAGCGGATGCGG  894

Query 1405  CGCCAGCACCAGAAGCAGCTGATCGCCCTGGAGAACAAGCTGAAGGCTGAGATGGACGAGCACCGCCTCAAGCT  1478
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||
Sbjct  895  CGCCAGCACCAGAAGCAGCTGATCGCCCTGGAGAACAAGCTGAAGGCTGAGATGGATGAGCACCGCCTCAAGCT  968

Query 1479  ACAGAAGGAGGTGGAGACGCATGCCAACAACTCGTCCATCGAGCTGGAGAAGCTGGCCAAGAAGCAAGTGGCTA  1552
            .||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  969  CCAGAAGGAGGTGGAGACGCACGCCAACAACTCGTCCATCGAGCTGGAGAAGCTGGCCAAGAAGCAAGTGGCTA  1042

Query 1553  TCATAGAAAAGGAGGCAAAGGTAGCTGCAGCAGATGAGAAGAAGTTCCAGCAACAGATCTTGGCCCAGCAGAAG  1626
            .||||||||||||||||||||||||.|||||.||||||||||||||||||||.||||||.||||||||||||||
Sbjct 1043  CCATAGAAAAGGAGGCAAAGGTAGCCGCAGCGGATGAGAAGAAGTTCCAGCAGCAGATCCTGGCCCAGCAGAAG  1116

Query 1627  AAAGATTTGACAACTTTCTTAGAAAGTCAGAAGAAGCAGTATAAGATTTGTAAGGAAAAAATAAAAGAGGAAAT  1700
            ||.||.|||||||||||||||||||||||||||||||||||.||||||||||||||.|||||||||||||||||
Sbjct 1117  AAGGACTTGACAACTTTCTTAGAAAGTCAGAAGAAGCAGTACAAGATTTGTAAGGAGAAAATAAAAGAGGAAAT  1190

Query 1701  GAATGAGGACCATAGCACACCCAAGAAAGAGAAGCAAGAGCGGATCTCCAAACATAAAGAGAACTTGCAGCACA  1774
            |||.|||||||||||||||||||||||.||||||||.||||||||.||.||.||||||||.|||.|||||||||
Sbjct 1191  GAACGAGGACCATAGCACACCCAAGAAGGAGAAGCAGGAGCGGATATCGAAGCATAAAGAAAACCTGCAGCACA  1264

Query 1775  CACAGGCTGAAGAGGAAGCCCACCTTCTCACTCAACAGAGACTGTACTACGACAAAAATTGTCGTTTCTTCAAG  1848
            |.|||||.||.||||||||||||||.||||||||||||||.|||||||||||||.|||.||.||.||||||||.
Sbjct 1265  CGCAGGCCGAGGAGGAAGCCCACCTGCTCACTCAACAGAGGCTGTACTACGACAGAAACTGCCGCTTCTTCAAA  1338

Query 1849  CGGAAAATAATGATCAAGCGGCACGAGGTGGAGCAGCAGAACATTCGGGAGGAACTAAATAAAAAGAGGACCCA  1922
            ||||||||||||||||||||.|||||||||||.|||||||||||||||||||||.|||||||.|||||||||||
Sbjct 1339  CGGAAAATAATGATCAAGCGCCACGAGGTGGAACAGCAGAACATTCGGGAGGAATTAAATAAGAAGAGGACCCA  1412

Query 1923  GAAGGAGATGGAGCATGCCATGCTAATCCGGCACGACGAGTCCACCCGAGAGCTAGAGTACAGGCAGCTGCACA  1996
            ||||||.||||||||.||||||||.||||||||.||.||.||||||||||||||.|||||||||||||||||||
Sbjct 1413  GAAGGAAATGGAGCACGCCATGCTGATCCGGCATGATGAATCCACCCGAGAGCTGGAGTACAGGCAGCTGCACA  1486

Query 1997  CGTTACAGAAGCTACGCATGGATCTGATCCGTTTACAGCACCAGACGGAACTGGAAAACCAGCTGGAGTACAAT  2070
            |..|.||||||||.|||||||||||||||||..|.||||||||||||||||||||.||||||||||||||||||
Sbjct 1487  CCCTGCAGAAGCTCCGCATGGATCTGATCCGGCTGCAGCACCAGACGGAACTGGAGAACCAGCTGGAGTACAAT  1560

Query 2071  AAGAGGCGAGAAAGAGAACTGCACAGAAAGCATGTCATGGAACTTCGGCAACAGCCAAAAAACTTAAAGGCCAT  2144
            ||||||||.||..|.||.||||||.|.|||||.||||||||.||||||||||||||.|||||||||||||||||
Sbjct 1561  AAGAGGCGGGAGCGGGAGCTGCACCGGAAGCACGTCATGGAGCTTCGGCAACAGCCGAAAAACTTAAAGGCCAT  1634

Query 2145  GGAAATGCAAATTAAAAAACAGTTTCAGGACACTTGCAAAGTACAGACCAAACAGTATAAAGCACTCAAGAATC  2218
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||.|||||.||||
Sbjct 1635  GGAAATGCAAATTAAAAAACAGTTTCAGGACACTTGCAAAGTACAGACCAAACAGTACAAAGCCCTCAAAAATC  1708

Query 2219  ACCAGTTGGAAGTTACTCCAAAGAATGAGCACAAAACAATCTTAAAGACACTGAAAGATGAGCAGACAAGAAAA  2292
            |||||||||||||.|||||||||||||||||||||.|||||.|||||||||||||.||.||||||||.||.||.
Sbjct 1709  ACCAGTTGGAAGTCACTCCAAAGAATGAGCACAAAGCAATCCTAAAGACACTGAAGGACGAGCAGACGAGGAAG  1782

Query 2293  CTTGCCATTTTGGCAGAGCAGTATGAACAGAGTATAAATGAAATGATGGCCTCTCAAGCGTTACGGCTAGATGA  2366
            ||.|||||||||||.|||||||||||||||||||||||.||.|||||||||||||||||||||||||||||.||
Sbjct 1783  CTGGCCATTTTGGCCGAGCAGTATGAACAGAGTATAAACGAGATGATGGCCTCTCAAGCGTTACGGCTAGACGA  1856

Query 2367  GGCTCAAGAAGCAGAATGCCAGGCCTTGAGGCTACAGCTCCAGCAGGAAATGGAGCTGCTCAACGCCTACCAGA  2440
            |||.|||||.|||||.||||||||||||||.|||||||||||||||||.|||||||||||||||||||||||||
Sbjct 1857  GGCACAAGAGGCAGAGTGCCAGGCCTTGAGACTACAGCTCCAGCAGGAGATGGAGCTGCTCAACGCCTACCAGA  1930

Query 2441  GCAAAATCAAGATGCAAACAGAGGCACAACATGAACGTGAGCTCCAGAAGCTAGAGCAGAGAGTGTCTCTGCGC  2514
            |||||||||||||||||||.|||||.||.||.||.||.|||||.|||||||||||||||||.|||||.||||||
Sbjct 1931  GCAAAATCAAGATGCAAACGGAGGCCCAGCACGAGCGCGAGCTACAGAAGCTAGAGCAGAGGGTGTCCCTGCGC  2004

Query 2515  AGAGCACACCTTGAGCAGAAGATTGAAGAGGAGCTGGCTGCCCTTCAGAAGGAACGCAGCGAGAGAATAAAGAA  2588
            |||||.||.|||||||||||||||||||||||||||||||||||.||||||||||||||.|||||.||.||||.
Sbjct 2005  AGAGCGCATCTTGAGCAGAAGATTGAAGAGGAGCTGGCTGCCCTGCAGAAGGAACGCAGTGAGAGGATCAAGAC  2078

Query 2589  CCTATTGGAAAGGCAAGAGCGAGAGATTGAAACTTTTGACATGGAGAGCCTCAGAATGGGATTTGGGAATTTGG  2662
            .||..||||.||.|||||||||||||..||.|||||||||||||||||||||||||||||.|||||||||||||
Sbjct 2079  TCTCCTGGAGAGACAAGAGCGAGAGACCGAGACTTTTGACATGGAGAGCCTCAGAATGGGCTTTGGGAATTTGG  2152

Query 2663  TTACATTAGATTTTCCTAAGGAGGACTACAGA  2694
            |.||||||||||||||||||||||||||.|||
Sbjct 2153  TGACATTAGATTTTCCTAAGGAGGACTATAGA  2184

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