Nucleotide Global Alignment
Description
- Query:
- TRCN0000487812
- Subject:
- XR_001741289.1
- Aligned Length:
- 1758
- Identities:
- 1133
- Gaps:
- 514
Alignment
Query 1 ------ATGAGCCTCCATTTCTTATACTACTGCAGTGAACCAACATTGGATGTGAAAATTGCCTTTTGTCAGGG 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTATTTATGAGCCTCCATTTCTTATACTACTGCAGTGAACCAACATTGGATGTGAAAATTGCCTTTTGTCAGGG 74
Query 69 ATTCGATAAACAAGTGGATGTGTCATATATTGCCAAACATTACAACATGAGCAAAAGCAAAGTTGACAACCAGT 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 ATTCGATAAACAAGTGGATGTGTCATATATTGCCAAACATTACAACATGAGCAAAAGCAAAGTTGACAACCAGT 148
Query 143 TCTACAGTGTGGAAGTGGGAGACTCAACCTTCACAGTTCTCAAGCGCTACCAGAATCTAAAGCCTATTGGCTCT 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 TCTACAGTGTGGAAGTGGGAGACTCAACCTTCACAGTTCTCAAGCGCTACCAGAATCTAAAGCCTATTGGCTCT 222
Query 217 GGGGCTCAGGGCATAGTTTGTGCCGCGTATGATGCTGTCCTTGACAGAAATGTGGCCATTAAGAAGCTCAGCAG 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GGGGCTCAGGGCATAGTTTGTGCCGCGTATGATGCTGTCCTTGACAGAAATGTGGCCATTAAGAAGCTCAGCAG 296
Query 291 ACCCTTTCAGAACCAAACACATGCCAAGAGAGCGTACCGGGAGCTGGTCCTCATGAAGTGTGTGAACCATAAAA 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 ACCCTTTCAGAACCAAACACATGCCAAGAGAGCGTACCGGGAGCTGGTCCTCATGAAGTGTGTGAACCATAAAA 370
Query 365 ACATTATTAGTTTATTAAATGTCTTCACACCCCAGAAAACGCTGGAGGAGTTCCAAGATGTTTACTTAGTAATG 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 ACATTATTAGTTTATTAAATGTCTTCACACCCCAGAAAACGCTGGAGGAGTTCCAAGATGTTTACTTAGTAATG 444
Query 439 GAACTGATGGATGCCAACTTATGTCAAGTGATTCAGATGGAATTAGACCATGAGCGAATGTCTTACCTGCTGTA 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GAACTGATGGATGCCAACTTATGTCAAGTGATTCAGATGGAATTAGACCATGAGCGAATGTCTTACCTGCTGTA 518
Query 513 CCAAATGTTGTGTGGCATTAAGCACCTCCATTCTGCTGGAATTATTCACAGGGATTTAAAACCAAGTAACATTG 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CCAAATGTTGTGTGGCATTAAGCACCTCCATTCTGCTGGAATTATTCACAGGGATTTAAAACCAAGTAACATTG 592
Query 587 TAGTCAAGTCTGATTGCACATTGAAAATCCTGGACTTTGGACTGGCCAGGACAGCAGGCACAAGCTTCATGATG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TAGTCAAGTCTGATTGCACATTGAAAATCCTGGACTTTGGACTGGCCAGGACAGCAGGCACAAGCTTCATGATG 666
Query 661 ACTCCATATGTGGTGACACGTTATTACAGAGCCCCTGAGGTCATCCTGGGGATGGGCTACAAGGAGAACG---- 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 ACTCCATATGTGGTGACACGTTATTACAGAGCCCCTGAGGTCATCCTGGGGATGGGCTACAAGGAGAACGATGA 740
Query 731 ----TGGATATATGGTCTGTGGGATGCATTATGGG----------AGAAATGGTTCGCCACAAAATCCTCTTTC 790
|..|||.|||..|| .||.|||.||..| .|||||..||| ||||
Sbjct 741 CTCCTTTATACATGTGCT----AATTCATCATATGTCTTTTTTCTTGAAATATTTC------AAAT-------- 796
Query 791 CAGGAAGGGACTA-----------TATTGACCAGTGGAATAAGGTAATT------GAACAACTAGG-----AAC 842
|||| |||| ||||.||.| |||||| |.|| |||.|.|||.| ||.
Sbjct 797 --GGAA---ACTAAAACTGATGTTTATTTACAA---GAATAA---ACTTCTGAAGGAAAAGCTAAGTCCCAAAT 859
Query 843 ACCATG---TCCAGAATTCATGAAGAAATTGC----AACCCA------CAGTAAGAAAC-----TATGTGGA-- 896
||||.| ||| |||||.| |||| ||.||| ||||.|....| ||| ||||
Sbjct 860 ACCAGGAATTCC--AATTCTT-------TTGCCTCTAAACCATGGTTCCAGTCATTTCCTGGTTTAT-TGGATT 923
Query 897 -----GAAT----------------CGGCCCAAGTATGCGGGACTCACCTTCCCC----AAA-----------C 934
|||| |||||| |||..||| ||| |
Sbjct 924 TGGTTGAATTTATCTTGTTTTGCCCCGGCCC----------------CCTGGCCCCCTGAAAAAAAAGGTGGTC 981
Query 935 TCTTCCCAGATTCCCTCTTCCCAGCGGACTCCGAGCACAAT--AAACTCAA---AGCCAGC----CAAGCCAGG 999
|||| |.|.||||.|||.|.| ..||| ||..|.||| |||.|.|| |||||.| ||||..|
Sbjct 982 TCTT----GTTGCCCTATTCTCTG-TAACT--GAATAGAATAGAAAATGAAAATAGCCAACTCTACAAGTTA-- 1046
Query 1000 GA-CTTGTTGTCAAAGATGCTAGTGAT--------TGACCCAGCAAAAAGAATATCAGTGGACGACGCCTTACA 1064
| .|||||.|| .|||| || ||||.||| ||||...| |..|||| |||..|
Sbjct 1047 -ATATTGTTTTC---TATGC-----ATCCGGAAAATGACACAG--AAAACCCT-TTGGTGG-------CTTTTA 1101
Query 1065 GC-ATC-CCTACATCA-------ACGTCTGGTATGA------------CCCAG---CCGAAGTGGAGGCGCCTC 1114
|| .|| |||.| || ||.|.|||| |.| |.||| ||.|.|| |.|
Sbjct 1102 GCTGTCACCTGC--CATGGAGATACTTTTGGT-TTAGCTATTGCTTTTCTCAGTCACCAATGT--------CAC 1164
Query 1115 CACCTCAGATAT-------ATGACAAGCAGTTGGATGAAAGAGAACACACAATTGAAG-AATGG------AAAG 1174
|||.| |.| .|||.|.||| |||.||| |.||.|||| ||| ||||| |||.
Sbjct 1165 CACTT----TGTGGCACTGCTGAGAGGCA-----ATGTAAG-GCACCCACA----AAGTAATGGGTTTTTAAAC 1224
Query 1175 AACTTA--------TCT--------ACAAGG---AAGTAA----------------TGAATTCA---------- 1203
| ||| ||| |||..| |.|||| ||||||||
Sbjct 1225 A--TTAATTTGAGTTCTCATACTAAACACTGTTTATGTAATAGCATAGCGCTGGTTTGAATTCACATTTTGGCC 1296
Query 1204 ------------GAAGAAAAGACTAAAAATGGTGTA---GTAA--AAGGACAG--------CCTTCTCCTTCAG 1252
||.| |.||||| |||| .||| || ||.| |||.|||||||||
Sbjct 1297 AACTTTTGGTGGGAGG-------TGAAAAT--TGTACTTTTAATCAA--ACTGTTCTTTTTCCTCCTCCTTCAG 1359
Query 1253 CA--CAGGTGCAGC--AGTGAACAGCAGTGAGAGTCTCCCTCCATCCTCGTCTGTCAATGACATCTC-CTCCAT 1321
.| ||..| |.| |||.|||...|.| |.|||| |||..||| |||.|..|.|||| |||| |
Sbjct 1360 AAGTCAATT--ATCTTAGTTAACTTTACT-------TTCCTC---CCTTTTCT-TCACTACCCTCTCTCTCC-T 1419
Query 1322 GTCC----------ACCGACCAGACCCTGGCATCTGACACTGACA-GCAGCCTGG------------------- 1365
||.| | ||| |||| ||..| |||...|||
Sbjct 1420 GTTCTAGTGGATATA------------TGG--TCTG----TGGGATGCATTATGGGAGAAATGGTTCGCCACAA 1475
Query 1366 AAGCCTC------GGCAG----------GACCCCTG------GGTTGTTG------CAGG-------------- 1397
||.|||| ||.|| ||||..|| |||..||| .|||
Sbjct 1476 AATCCTCTTTCCAGGAAGGGACTATATTGACCAGTGGAATAAGGTAATTGAACAACTAGGAACACCATGTCCAG 1549
Query 1398 -------------------------------------------------------- 1397
Sbjct 1550 AATTCATGAAGAAATTGCAACCCACAGTAAGAAACTATGTGGAGAATCGGCCCAAG 1605
