Nucleotide Global Alignment
Description
- Query:
- TRCN0000487850
- Subject:
- XM_011242121.1
- Aligned Length:
- 2194
- Identities:
- 1103
- Gaps:
- 968
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGTGGGGCTGGAAGTGCCTCCTCTTCTGGGCTGTGCTGGTCACAGCCACTCTCTGCACTGCCAGGCCAGCCCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AACCTTGCCTGAACAAGATGCACTCCCATCCTCGGAAGATGATGACGACGACGATGACTCCTCCTCGGAGGAGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AAGAGACGGACAACACCAAACCAAACCCTGTAGCTCCCTACTGGACATCCCCAGAGAAAATGGAGAAGAAACTG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CATGCGGTGCCCGCTGCCAAGACGGTGAAGTTCAAGTGCCCGTCGAGTGGGACACCCAACCCCACTCTGCGCTG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GTTGAAAAATGGCAAAGAGTTTAAGCCTGACCACCGAATTGGAGGCTACAAGGTTCGCTATGCCACCTGGAGCA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TCATAATGGATTCTGTGGTGCCTTCTGACAAGGGCAACTACACCTGCATCGTGGAGAATGAGTATGGGAGCATC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AACCACACCTACCAGCTTGACGTCGTGGAACGATCTCCGCACCGACCCATCCTTCAGGCAGGGCTGCCTGCCAA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CAAGACAGTGGCCCTGGGCAGCAATGTGGAGTTCATGTGTAAGGTGTACAGCGATCCGCAGCCTCACATTCAGT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GGCTGAAGCACATCGAGGTGAACGGGAGTAAGATCGGGCCAGACAACTTGCCGTATGTCCAGATCCTGAAGACT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GCTGGAGTTAATACCACCGACAAGGAAATGGAGGTGCTTCATCTACGGAATGTCTCCTTTGAGGATGCGGGGGA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GTATACGTGCTTGGCGGGTAACTCTATCGGACTCTCCCATCACTCTGCATGGTTGACCGTTCTGGAAGCCCTGG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AAGAGAGACCAGCTGTGATGACCTCACCGCTCTACCTGGAGATCATTATCTACTGCACCGGGGCCTTCCTGATC 888
Query 1 ------------------------------------------------------------------------AT 2
||
Sbjct 889 TCCTGCATGTTGGGCTCTGTCATCATCTATAAGATGAAGAGCGGCACCAAGAAGAGCGACTTCCATAGCCAGAT 962
Query 3 GGCTGTGCACAAGCTGGCCAAGAGCATCCCTCTGCGCAGACAG------GTGTCTGCTGACTCCAGTGCATCCA 70
||||||||||||||||||||||||||||||||||||||||||| |||||.|||||||||||||||||||
Sbjct 963 GGCTGTGCACAAGCTGGCCAAGAGCATCCCTCTGCGCAGACAGGTAACAGTGTCAGCTGACTCCAGTGCATCCA 1036
Query 71 TGAACTCTGGGGTTCTTCTGGTTCGGCCATCACGGCTCTCCTCCAGTGGGACTCCCATGCTAGCAGGGGTCTCT 144
||||||||||||||||.|||||||||||.|||||||||||||||||.|||||.||||||||.||.||.|||||.
Sbjct 1037 TGAACTCTGGGGTTCTCCTGGTTCGGCCCTCACGGCTCTCCTCCAGCGGGACCCCCATGCTGGCTGGAGTCTCC 1110
Query 145 GAGTATGAGCTTCCCGAAGACCCTCGCTGGGAGCTGCCTCGGGACAGACTGGTCTTAGGCAAACCCCTGGGAGA 218
||.||||||||.||.||.||.||.||||||||||||||.||.|||||||||||||||||||||||.||.||.||
Sbjct 1111 GAATATGAGCTCCCTGAGGATCCCCGCTGGGAGCTGCCACGAGACAGACTGGTCTTAGGCAAACCACTTGGCGA 1184
Query 219 GGGCTGCTTTGGGCAGGTGGTGTTGGCAGAGGCTATCGGGCTGGACAAGGACAAACCCAACCGTGTGACCAAAG 292
|||||||||.|||||||||||||||||.|||||.|||||||||||.||||||||||||||||||||||||||||
Sbjct 1185 GGGCTGCTTCGGGCAGGTGGTGTTGGCTGAGGCCATCGGGCTGGATAAGGACAAACCCAACCGTGTGACCAAAG 1258
Query 293 TGGCTGTGAAGATGTTGAAGTCGGACGCAACAGAGAAAGACTTGTCAGACCTGATCTCAGAAATGGAGATGATG 366
||||.|||||||||||||||||.||||||||.|||||.|||.||||.||.||||||||.||.||||||||||||
Sbjct 1259 TGGCCGTGAAGATGTTGAAGTCCGACGCAACGGAGAAGGACCTGTCGGATCTGATCTCGGAGATGGAGATGATG 1332
Query 367 AAGATGATCGGGAAGCATAAGAATATCATCAACCTGCTGGGGGCCTGCACGCAGGATGGTCC-CTTGTATGTCA 439
||.|||||.||||||||.|||||||||||||||||.|||||.||.|||||.||||||||||| ||| |||||||
Sbjct 1333 AAAATGATTGGGAAGCACAAGAATATCATCAACCTTCTGGGAGCGTGCACACAGGATGGTCCTCTT-TATGTCA 1405
Query 440 TCGTGGAGTATGCCTCCAAGGGCAACCTGCGGGAGTACCTGCAGGCCCGGAGGCCCCCAGGGCTGGAATACTGC 513
|.||||||||.||||||||.|||||.||.||||||||.||.||||||||||||||.||.||||||||.||||||
Sbjct 1406 TTGTGGAGTACGCCTCCAAAGGCAATCTCCGGGAGTATCTACAGGCCCGGAGGCCTCCTGGGCTGGAGTACTGC 1479
Query 514 TACAACCCCAGCCACAACCCAGAGGAGCAGCTCTCCTCCAAGGACCTGGTGTCCTGCGCCTACCAGGTGGCCCG 587
||.|||||||||||||||||.|||||.|||||.||.|||||.||.|||||.|||||.|||||.||||||||.||
Sbjct 1480 TATAACCCCAGCCACAACCCCGAGGAACAGCTGTCTTCCAAAGATCTGGTATCCTGTGCCTATCAGGTGGCTCG 1553
Query 588 AGGCATGGAGTATCTGGCCTCCAAGAAGTGCATACACCGAGACCTGGCAGCCAGGAATGTCCTGGTGACAGAGG 661
.||||||||||||||.|||||.||||||||.|||||||||||||||||.||.|||||.|||||||||||.||||
Sbjct 1554 GGGCATGGAGTATCTTGCCTCTAAGAAGTGTATACACCGAGACCTGGCTGCTAGGAACGTCCTGGTGACCGAGG 1627
Query 662 ACAATGTGATGAAGATAGCAGACTTTGGCCTCGCACGGGACATTCACCACATCGACTACTATAAAAAGACAACC 735
|.||.||.||||||||.||||||||||||.|.||.||.||||||||.||.|||||||||||.||.||.||.|||
Sbjct 1628 ATAACGTAATGAAGATCGCAGACTTTGGCTTAGCTCGAGACATTCATCATATCGACTACTACAAGAAAACCACC 1701
Query 736 AACGGCCGACTGCCTGTGAAGTGGATGGCACCCGAGGCATTATTTGACCGGATCTACACCCACCAGAGTGATGT 809
||||||||.||||||||||||||||||||.||.|||||.||.|||||||||||||||||.||||||||.|||||
Sbjct 1702 AACGGCCGGCTGCCTGTGAAGTGGATGGCCCCTGAGGCGTTGTTTGACCGGATCTACACACACCAGAGCGATGT 1775
Query 810 GTGGTCTTTCGGGGTGCTCCTGTGGGAGATCTTCACTCTGGGCGGCTCCCCATACCCCGGTGTGCCTGTGGAGG 883
|||||||||.||.||||||.||||||||||||||||||||||.|||||||||||||||||||||||||||||||
Sbjct 1776 GTGGTCTTTTGGAGTGCTCTTGTGGGAGATCTTCACTCTGGGTGGCTCCCCATACCCCGGTGTGCCTGTGGAGG 1849
Query 884 AACTTTTCAAGCTGCTGAAGGAGGGTCACCGCATGGACAAGCCCAGTAACTGCACCAACGAGCTGTACATGATG 957
||||||||||||||||||||||||||||.||.||||||||||||||||||||.|||||.|||||||||||||||
Sbjct 1850 AACTTTTCAAGCTGCTGAAGGAGGGTCATCGAATGGACAAGCCCAGTAACTGTACCAATGAGCTGTACATGATG 1923
Query 958 ATGCGGGACTGCTGGCATGCAGTGCCCTCACAGAGACCCACCTTCAAGCAGCTGGTGGAAGACCTGGACCGCAT 1031
|||||||||||||||||||||||||||||.||||||||.||.|||||||||.||||||||||||||||||||||
Sbjct 1924 ATGCGGGACTGCTGGCATGCAGTGCCCTCTCAGAGACCTACGTTCAAGCAGTTGGTGGAAGACCTGGACCGCAT 1997
Query 1032 CGTGGCCTTGACCTCCAACCAGGAGTACCTGGACCTGTCCATGCCCCTGGACCAGTACTCCCCCAGCTTTCCCG 1105
.||||||||||||||||||||||||||.||||||||||||||.||.||||||||||||||.|||||||||||||
Sbjct 1998 TGTGGCCTTGACCTCCAACCAGGAGTATCTGGACCTGTCCATACCGCTGGACCAGTACTCACCCAGCTTTCCCG 2071
Query 1106 ACACCCGGAGCTCTACGTGCTCCTCAGGGGAGGATTCCGTCTTCTCTCATGAGCCGCTGCCCGAGGAGCCCTGC 1179
||||.||||||||.||.|||||||||||||||||.||.||||||||||||||||||.|.||.|||||||||||.
Sbjct 2072 ACACACGGAGCTCCACCTGCTCCTCAGGGGAGGACTCTGTCTTCTCTCATGAGCCGTTACCTGAGGAGCCCTGT 2145
Query 1180 CTGCCCCGACACCCAGCCCAGCTTGCCAATGGCGGACTCAAACGCCGC 1227
|||||.||||||||..|||||||||||||..|.|||||||||||.|||
Sbjct 2146 CTGCCTCGACACCCCACCCAGCTTGCCAACAGTGGACTCAAACGGCGC 2193
