Nucleotide Global Alignment

Description

Query:
TRCN0000487852
Subject:
NM_001252579.1
Aligned Length:
2736
Identities:
2243
Gaps:
184

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGCAAATCCTGAGGGAAGAGGGGAAGGAATCCCATCCTCACGACACCACCTCGGCCTCTGCATCCAGGAAGA  74

Query    1  -------------------------ATGGGCCCCCCGAGCCTCGTGCTGTGCTTGCTGTCCGCAACTGTGTTCT  49
                                     ||||..|||||..||||....||.||..||||||||.|..||.|..|||
Sbjct   75  AGCAAAGGACCAGCAAGCCACGCCAATGGCACCCCCTGGCCTGCCACTATGGCTGCTGTCCACCGCTCTCCTCT  148

Query   50  CCCTGCTGGGTGGAAGCTCGGCCTTCCTGTCGCACCACCGCCTGAAAGGCAGGTTTCAGAGGGACCGCAGGAAC  123
            |||||||||.|||.||||||||||||||.||.||.|.|||||||||.||..|.||.||||||||||||||||||
Sbjct  149  CCCTGCTGGCTGGCAGCTCGGCCTTCCTCTCCCATCCCCGCCTGAAGGGACGCTTCCAGAGGGACCGCAGGAAC  222

Query  124  ATCCGCCCCAACATCATCCTGGTGCTGACGGACGACCAGGATGTGGAGCTGGGTTCCATGCAGGTGATGAACAA  197
            |||||.||||||||||||.|||||||.|||||.||||||||||||||||||||.||||||||.|||||||||||
Sbjct  223  ATCCGGCCCAACATCATCTTGGTGCTTACGGATGACCAGGATGTGGAGCTGGGCTCCATGCAAGTGATGAACAA  296

Query  198  GACCCGGCGCATCATGGAGCAGGGCGGGACGCACTTCATCAACGCCTTCGTGACCACACCCATGTGCTGCCCCT  271
            |||..||||.||||||||||||||||||.|||||||||||||.|||||||||||.|||||.||||||||.||.|
Sbjct  297  GACAAGGCGTATCATGGAGCAGGGCGGGGCGCACTTCATCAATGCCTTCGTGACTACACCAATGTGCTGTCCGT  370

Query  272  CACGCTCCTCCATCCTCACCGGCAAGTACGTCCACAACCACAACACCTACACCAACAATGAGAACTGCTCCTCG  345
            |.|||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||.||.||||||
Sbjct  371  CTCGCTCCTCCATTCTCACCGGCAAGTACGTCCACAACCACAACACCTACACCAACAATGAGAATTGTTCCTCG  444

Query  346  CCCTCCTGGCAGGCACAGCACGAGAGCCGCACCTTTGCCGTGTACCTCAATAGCACTGGCTACCGGACAGCTTT  419
            ||||||||||||||.||||||||||||||||||||.||||||||.|||||.|||||.|||||||||||||||||
Sbjct  445  CCCTCCTGGCAGGCCCAGCACGAGAGCCGCACCTTCGCCGTGTATCTCAACAGCACAGGCTACCGGACAGCTTT  518

Query  420  CTTCGGGAAGTATCTTAATGAATACAACGGCTCCTACGTGCCACCCGGCTGGAAGGAGTGGGTCGGACTCCTTA  493
            ||||||.||.||.||.|||||.|||||||||||.||||||||.|||||||||||||||||||||||.||.||||
Sbjct  519  CTTCGGAAAATACCTCAATGAGTACAACGGCTCATACGTGCCGCCCGGCTGGAAGGAGTGGGTCGGCCTACTTA  592

Query  494  AAAACTCCCGCTTTTATAACTACACGCTGTGTCGGAACGGGGTGAAAGAGAAGCACGGCTCCGACTACTCCAAG  567
            |.|||||||||||||||||||||||.||.||.|||||.||||||||.|||||.||.|||||.||||||||||.|
Sbjct  593  AGAACTCCCGCTTTTATAACTACACACTCTGCCGGAATGGGGTGAAGGAGAAACATGGCTCAGACTACTCCACG  666

Query  568  GATTACCTCACAGACCTCATCACCAATGACAGCGTGAGCTTCTTCCGCACGTCCAAGAAGATGTACCCGCACAG  641
            |||||||||||.||.|||||||||||||||||.||||||||||||||.||.|||||||||||||||||.|||||
Sbjct  667  GATTACCTCACGGATCTCATCACCAATGACAGTGTGAGCTTCTTCCGAACATCCAAGAAGATGTACCCACACAG  740

Query  642  GCCAGTCCTCATGGTCATCAGCCATGCAGCCCCCCACGGCCCTGAGGATTCAGCCCCACAATATTCACGCCTCT  715
            |||.||.|||||||||||||||||.||.||.|||||.|||||.|||||.|||||.||.||.||.|||||.||||
Sbjct  741  GCCCGTGCTCATGGTCATCAGCCACGCGGCTCCCCATGGCCCCGAGGACTCAGCACCCCAGTACTCACGGCTCT  814

Query  716  TCCCAAACGCATCTCAGCACATCACGCCGAGCTACAACTACGCGCCCAACCCGGACAAACACTGGATCATGCGC  789
            ||||.||.||.||.|||||||||||.|||||.||||||||.||.||||||||.|||||.||.||||||||||||
Sbjct  815  TCCCCAATGCGTCCCAGCACATCACACCGAGTTACAACTATGCACCCAACCCAGACAAGCATTGGATCATGCGC  888

Query  790  TACACGGGGCCCATGAAGCCCATCCACATGGAATTCACCAACATGCTCCAGCGGAAGCGCTTGCAGACCCTCAT  863
            ||||||||.||||||||||||||.|||||||||||||||||||||||.||.||.||.|||.|.|||||||||||
Sbjct  889  TACACGGGACCCATGAAGCCCATTCACATGGAATTCACCAACATGCTACAACGAAAACGCCTACAGACCCTCAT  962

Query  864  GTCGGTGGACGACTCCATGGAGACGATTTACAACATGCTGGTTGAGACGGGCGAGCTGGACAACACGTACATCG  937
            |||.|||||.|||||||||||||||||.||..||||||||||.||||||||.|||||||||||||||||||||.
Sbjct  963  GTCTGTGGATGACTCCATGGAGACGATCTATGACATGCTGGTGGAGACGGGGGAGCTGGACAACACGTACATCC  1036

Query  938  TATACACCGCCGACCACGGTTACCACATCGGCCAGTTTGGCCTGGTGAAAGGGAAATCCATGCCATATGAGTTT  1011
            |.|||||||||||||||||.||||||||.|||||||||||.||||||||.||.||.||.|||||.|||||.||.
Sbjct 1037  TGTACACCGCCGACCACGGCTACCACATTGGCCAGTTTGGGCTGGTGAAGGGCAAGTCTATGCCGTATGAATTC  1110

Query 1012  GACATCAGGGTCCCGTTCTACGTGAGGGGCCCCAACGTGGAAGCCGGCTGTCTGAATCCCCACATCGTCCTCAA  1085
            ||||||||.|||||||||||||||||||||||||||||||||||.||||.||||||.||||||||.||||||||
Sbjct 1111  GACATCAGAGTCCCGTTCTACGTGAGGGGCCCCAACGTGGAAGCTGGCTCTCTGAACCCCCACATTGTCCTCAA  1184

Query 1086  CATTGACCTGGCCCCCACCATCCTGGACATTGCAGGCCTGGACATACCTGCGGATATGGACGGGAAATCCATCC  1159
            |||||||||||||||||||||.|||||.||.||.||.||||||||.|||||.||.|||||||||||.||.||.|
Sbjct 1185  CATTGACCTGGCCCCCACCATACTGGATATCGCTGGACTGGACATCCCTGCAGACATGGACGGGAAGTCTATTC  1258

Query 1160  TCAAGCTGCTGGACACGGAGCGGCCGGTGAATCGGTTTCACTTGAAAAAGAAGATGAGGGTCTGGCGGGACTCC  1233
            ||||.||.||||||.|.||||||||.|||||.|||||.|||||||||||||||.|||||||||||||.||||||
Sbjct 1259  TCAAACTACTGGACTCAGAGCGGCCAGTGAACCGGTTCCACTTGAAAAAGAAGCTGAGGGTCTGGCGAGACTCC  1332

Query 1234  TTCTTGGTGGAGAGAGGCAAGCTGCTACACAAGAGAGACAATGACAAGGTGGACGCCCAGGAGGAGAACTTTCT  1307
            |||.||||||||||||||||.|||||.||||||||.||...||||||.|||.|.|||||||||||||||||.||
Sbjct 1333  TTCCTGGTGGAGAGAGGCAAACTGCTCCACAAGAGGGAGGGTGACAAAGTGAATGCCCAGGAGGAGAACTTCCT  1406

Query 1308  GCCCAAGTACCAGCGTGTGAAGGACCTGTGTCAGCGTGCTGAGTACCAGACGGCGTGTGAGCAGCTGGGACAGA  1381
            |||||||||||||||.||||||||||||||||||||.||||||||||||||.||.||.||.||||||||.||||
Sbjct 1407  GCCCAAGTACCAGCGCGTGAAGGACCTGTGTCAGCGAGCTGAGTACCAGACAGCATGCGAACAGCTGGGGCAGA  1480

Query 1382  AGTGGCAGTGTGTGGAGGACGCCACGGGGAAGCTGAAGCTGCATAAGTGCAAGGGCCCCATGCGGCT-------  1448
            ||||||||||||||||||||||..|.||||.||||||||||||.||.||.||.||||||||||||.|       
Sbjct 1481  AGTGGCAGTGTGTGGAGGACGCTTCTGGGACGCTGAAGCTGCACAAATGTAAAGGCCCCATGCGGTTTGGTGGC  1554

Query 1449  --GGGCGGCAGCAGAGCCCTCTCCAACCTCGTGCCCAAGTACTACGGGCAGGGCAGCGAGGCCTGCACCTGTGA  1520
              .||.|||||||||||||||||||||||.|||||||||||..||||.|||.|||||||||||||||.||||||
Sbjct 1555  GGCGGTGGCAGCAGAGCCCTCTCCAACCTGGTGCCCAAGTATGACGGCCAGAGCAGCGAGGCCTGCAGCTGTGA  1628

Query 1521  CA---------GCGGGGACTACAAGCTCAGCCTGGCCGGACGCCGGAAAAAACTCTTCAAGAAGAAGTACAAGG  1585
            ||         |.|||||||||||.||..|||||||.||||||||   .||.|||||.|||||.|||||.|||.
Sbjct 1629  CAGTGGCGGTGGAGGGGACTACAAACTGGGCCTGGCTGGACGCCG---TAAGCTCTTTAAGAAAAAGTATAAGA  1699

Query 1586  CCAGCTATGTCCGCAGTCGCTCCATCCGCTCAGTGGCCATCGAGGTGGACGGCAGGGTGTACCACGTAGGCCTG  1659
            |||||||||.|||.|..|||||||||||.||.||||||||||||||||||||...|.|.||||||||||||.||
Sbjct 1700  CCAGCTATGCCCGGAACCGCTCCATCCGTTCCGTGGCCATCGAGGTGGACGGTGAGATATACCACGTAGGCTTG  1773

Query 1660  GGTGATGCCGCC-CAGCCCCGAAACCTCACCAAGCGGCACTGGCCAGGGGCCCCTGAGGACCAAGATGACAAGG  1732
            |.|..|| .||| ||||||||.|||||.|.|||||.|||||||||||||||||||||.||||||||||||||||
Sbjct 1774  GATACTG-TGCCTCAGCCCCGCAACCTTAGCAAGCCGCACTGGCCAGGGGCCCCTGAAGACCAAGATGACAAGG  1846

Query 1733  ATGGTGGGGACTTCAGTGGCACTGGAGGCCTTCCCGACTACTCAGCCGCCAACCCCATTAAAGTGACACATCGG  1806
            |||||||....||||||||.|||||.||||||||.||.||.||.|||.||||.|||||.||||||||.||||||
Sbjct 1847  ATGGTGGCAGTTTCAGTGGTACTGGTGGCCTTCCAGATTATTCTGCCCCCAATCCCATCAAAGTGACCCATCGG  1920

Query 1807  TGCTACATCCTAGAGAACGACACAGTCCAGTGTGACCTGGACCTGTACAAGTCCCTGCAGGCCTGGAAAGACCA  1880
            |||||||||||.|||||.||||||||||||||.|||.|||||||||||||||||||||||||.|||||||||||
Sbjct 1921  TGCTACATCCTTGAGAATGACACAGTCCAGTGCGACTTGGACCTGTACAAGTCCCTGCAGGCTTGGAAAGACCA  1994

Query 1881  CAAGCTGCACATCGACCACGAGATTGAAACCCTGCAGAACAAAATTAAGAACCTGAGGGAAGTCCGAGGTCACC  1954
            ||||||||||||||||||.|||||.|||||||||||||||||||||||||||||..|.||||||.|.|||||||
Sbjct 1995  CAAGCTGCACATCGACCATGAGATCGAAACCCTGCAGAACAAAATTAAGAACCTTCGAGAAGTCAGGGGTCACC  2068

Query 1955  TGAAGAAAAAGCGGCCAGAAGAATGTGACTGTCACAAAATCAGCTACCACACCCAGCACAAAGGCCGCCTCAAG  2028
            |||||||.|||||.||.||||||||||||||.||.|.||||||.|||||||.|||.|||||||||||.||||||
Sbjct 2069  TGAAGAAGAAGCGACCGGAAGAATGTGACTGCCATAGAATCAGTTACCACAGCCAACACAAAGGCCGTCTCAAG  2142

Query 2029  CACAGAGGCTCCAGTCTGCATCCTTTCAGGAAGGGCCTGCAAGAGAAGGACAAGGTGTGGCTGTTGCGGGAGCA  2102
            ||||.|||||||||.|||||.||||||||||||||.|||||.|||||||||||||||||||||.||||||||||
Sbjct 2143  CACAAAGGCTCCAGCCTGCACCCTTTCAGGAAGGGTCTGCAGGAGAAGGACAAGGTGTGGCTGCTGCGGGAGCA  2216

Query 2103  GAAGCGCAAGAAGAAACTCCGCAAGCTGCTCAAGCGCCTGCAGAACAACGACACGTGCAGCATGCCAGGCCTCA  2176
            |||.||||||||||||||.||||||||||||||.||.||||||||||||||.||||||||||||||.|||||||
Sbjct 2217  GAAACGCAAGAAGAAACTGCGCAAGCTGCTCAAACGGCTGCAGAACAACGATACGTGCAGCATGCCCGGCCTCA  2290

Query 2177  CGTGCTTCACCCACGACAACCAGCACTGGCAGACGGCGCCTTTCTGGACACTGGGGCCTTTCTGTGCCTGCACC  2250
            |||||||.||||||||||||||.|||||||||||||||||..|||||||.||||||||.|||||.|||||||||
Sbjct 2291  CGTGCTTTACCCACGACAACCACCACTGGCAGACGGCGCCACTCTGGACGCTGGGGCCGTTCTGCGCCTGCACC  2364

Query 2251  AGCGCCAACAATAACACGTACTGGTGCATGAGGACCATCAATGAGACTCACAATTTCCTCTTCTGTGAATTTGC  2324
            |||||||||||.|||||||||||||||.||||||||||.||||||||.|||||.|||||||||||.||||||||
Sbjct 2365  AGCGCCAACAACAACACGTACTGGTGCTTGAGGACCATAAATGAGACCCACAACTTCCTCTTCTGCGAATTTGC  2438

Query 2325  AACTGGCTTCCTAGAGTACTTTGATCTCAACACAGACCCCTACCAGCTGATGAATGCAGTGAACACACTGGACA  2398
            |||.||||||.||||.||||||||.||||..|||||||||||||||||||||||.||.||||||||||||||||
Sbjct 2439  AACCGGCTTCATAGAATACTTTGACCTCAGTACAGACCCCTACCAGCTGATGAACGCGGTGAACACACTGGACA  2512

Query 2399  GGGATGTCCTCAACCAGCTACACGTACAGCTCATGGAGCTGAGGAGCTGCAAGGGTTACAAGCAGTGTAACCCC  2472
            ||||.|||||.|||||.||.|||||.||||||||||||||.||||||||.||.||.|||||||||||.||||||
Sbjct 2513  GGGACGTCCTTAACCAACTGCACGTGCAGCTCATGGAGCTAAGGAGCTGTAAAGGCTACAAGCAGTGCAACCCC  2586

Query 2473  CGGACTCGAAACATGGACCTGGGACTTAAAGATGGAGGAAGCTATGAGCAATACAG------------------  2528
            |||||.||.||||||||||||||.||||.|||.||||||||||||||.||||||||                  
Sbjct 2587  CGGACCCGCAACATGGACCTGGGGCTTAGAGACGGAGGAAGCTATGAACAATACAGGCAGTTTCAGCGTCGAAA  2660

Query 2529  ------------------------------------GGGACAACTGTGGGAAGGCTGGGAAGGTTAAAAGCT  2564
                                                ||||||.||.||||||||.||||||||.        
Sbjct 2661  ATGGCCAGAAATGAAGAGACCTTCTTCCAAATCACTGGGACAGCTATGGGAAGGTTGGGAAGGC--------  2724

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