Nucleotide Global Alignment

Description

• Query: TRCN0000487969
• Subject: XR_949402.3
• Aligned Length: 4503
• Identities: 2111
• Gaps: 2392

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGATGAACGATGAACCTCAGGCTGAGCGCCTCACGGTTTCCTCATGTCACCGGGGCTGGGGGTGCAGTTTGGCT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TCACACTGCTAGGTCTTTTCTTGTTTTTAAGGGGGCAGGGGCTGTCACCTCTGAGGAGTCAGCTGTGATTGATC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CTTCTCCACACCCAGCCAAGCACCCCCCAGACAGGGGAGCGCCCGCAGTAGGGCGGTAGGCAAGGGCAGTTCTA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GCCAACAGTCCCTAAATCATCCCAGCGGGGGCGCGGGAAATTCCACCGAGGTGAAAGCCTAGGGGGCCGGGTGA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  AGAAATCCCCATACCCGGGCCCAGAAACCGCTCCAGGTGGAAGTAACTTGTCTAAAGAGAACAGGGTGTAACGG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GGGTCATTTCAGGGCTGTTCTTTTAAATCGGTGAGCACGGTCTGTCTACTTTCCCTCAGTTGTCTAGAGACCAC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  ACGCCACCCCCGCCCCGGGGGAGTCGCCCGGTCGAGGGTCCCGGGACAGGCGCAGCACTCGCAGCATCCGGACC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TGGTCTGCCTCGCGCCGGGAGCGGCCTCTTTAAGAGCGGCCGCGGCCAACGTGCTCCGTGACGTCAGAGCAGGA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  AGTGTTTGAGGAAGTCGCGCCGCGCTGCCCGCGTTAAGATTCCCGCATTTTAATGTTTTCAGGGGGGTGTCATA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GCCCCGGGTTTGGCCGCCCCAGCCCCGCCTTCCCCGCCCCGGGGAGCCCGCCCCCTGCCCCGCGTCCCTGCCGA  740

Query    1  ---------------------ATGAGCTGGTCACCTTCCCTGACAACGCAGACATGTGGGGCCTGGGAAATGAA  53
                                 |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  CAGAGTTAGCACGACATCAGTATGAGCTGGTCACCTTCCCTGACAACGCAGACATGTGGGGCCTGGGAAATGAA  814

Query   54  AGAGCGCCTTGGGACAGGGGGATTTGGAAATGTCATCCGATGGCACAATCAGGAAACAGGTGAGCAGATTGCCA  127
            ||||||||||||||||||||||||||||||||||||||||||||||||||                        
Sbjct  815  AGAGCGCCTTGGGACAGGGGGATTTGGAAATGTCATCCGATGGCACAATC------------------------  864

Query  128  TCAAGCAGTGCCGGCAGGAGCTCAGCCCCCGGAACCGAGAGCGGTGGTGCCTGGAGATCCAGATCATGAGAAGG  201
                                                                                   |||
Sbjct  865  -----------------------------------------------------------------------AGG  867

Query  202  CTGACCCACCCCAATGTGGTGGCTGCCCGAGATGTCCCTGAGGGGATGCAGAACTTGGCGCCCAATGACCTGCC  275
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  868  CTGACCCACCCCAATGTGGTGGCTGCCCGAGATGTCCCTGAGGGGATGCAGAACTTGGCGCCCAATGACCTGCC  941

Query  276  CCTGCTGGCCATGGAGTACTGCCAAGGAGGAGATCTCCGGAAGTACCTGAACCAGTTTGAGAACTGCTGTGGTC  349
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  942  CCTGCTGGCCATGGAGTACTGCCAAGGAGGAGATCTCCGGAAGTACCTGAACCAGTTTGAGAACTGCTGTGGTC  1015

Query  350  TGCGGGAAGGTGCCATCCTCACCTTGCTGAGTGACATTGCCTCTGCGCTTAGATACCTTCATGAAAACAGAATC  423
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016  TGCGGGAAGGTGCCATCCTCACCTTGCTGAGTGACATTGCCTCTGCGCTTAGATACCTTCATGAAAACAGAATC  1089

Query  424  ATCCATCGGGATCTAAAGCCAGAAAACATCGTCCTGCAGCAAGGAGAACAGAGGTTAATACACAAAATTATTGA  497
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1090  ATCCATCGGGATCTAAAGCCAGAAAACATCGTCCTGCAGCAAGGAGAACAGAGGTTAATACACAAAATTATTGA  1163

Query  498  CCTAGGATATGCCAAGGAGCTGGATCAGGGCAGTCTTTGCACATCATTCGTGGGGACCCTGCAGTACCTGGCCC  571
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1164  CCTAGGATATGCCAAGGAGCTGGATCAGGGCAGTCTTTGCACATCATTCGTGGGGACCCTGCAGTACCTGGCCC  1237

Query  572  CAGAGCTACTGGAGCAGCAGAAGTACACAGTGACCGTCGACTACTGGAGCTTCGGCACCCTGGCCTTTGAGTGC  645
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1238  CAGAGCTACTGGAGCAGCAGAAGTACACAGTGACCGTCGACTACTGGAGCTTCGGCACCCTGGCCTTTGAGTGC  1311

Query  646  ATCACGGGCTTCCGGCCCTTCCTCCCCAACTGGCAGCCCGTGCAGTGGCATTCAAAAGTGCGGCAGAAGAGTGA  719
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312  ATCACGGGCTTCCGGCCCTTCCTCCCCAACTGGCAGCCCGTGCAGTGGCATTCAAAAGTGCGGCAGAAGAGTGA  1385

Query  720  GGTGGACATTGTTGTTAGCGAAGACTTGAATGGAACGGTGAAGTTTTCAAGCTCTTTACCCTACCCCAATAATC  793
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1386  GGTGGACATTGTTGTTAGCGAAGACTTGAATGGAACGGTGAAGTTTTCAAGCTCTTTACCCTACCCCAATAATC  1459

Query  794  TTAACAGTGTCCTGGCTGAGCGACTGGAGAAGTGGCTGCAACTGATGCTGATGTGGCACCCCCGACAGAGGGGC  867
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1460  TTAACAGTGTCCTGGCTGAGCGACTGGAGAAGTGGCTGCAACTGATGCTGATGTGGCACCCCCGACAGAGGGGC  1533

Query  868  ACGGATCCCACGTATGGGCCCAATGGCTGCTTCAAGGCCCTGGATGACATCTTAAACTTAAAGCTGGTTCATAT  941
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1534  ACGGATCCCACGTATGGGCCCAATGGCTGCTTCAAGGCCCTGGATGACATCTTAAACTTAAAGCTGGTTCATAT  1607

Query  942  CTTGAACATGGTCACGGGCACCATCCACACCTACCCTGTGACAGAGGATGAGAGTCTGCAGAGCTTGAAGGCCA  1015
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1608  CTTGAACATGGTCACGGGCACCATCCACACCTACCCTGTGACAGAGGATGAGAGTCTGCAGAGCTTGAAGGCCA  1681

Query 1016  GAATCCAACAGGACACGGGCATCCCAGAGGAGGACCAGGAGCTGCTGCAGGAAGCGGGCCTGGCGTTGATCCCC  1089
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1682  GAATCCAACAGGACACGGGCATCCCAGAGGAGGACCAGGAGCTGCTGCAGGAAGCGGGCCTGGCGTTGATCCCC  1755

Query 1090  GATAAGCCTGCCACTCAGTGTATTTCAGACGGCAAGTTAAATGAGGGCCACACATTGGACATGGATCTTGTTTT  1163
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1756  GATAAGCCTGCCACTCAGTGTATTTCAGACGGCAAGTTAAATGAGGGCCACACATTGGACATGGATCTTGTTTT  1829

Query 1164  TCTCTTTGACAACAGTAAAATCACCTATGAGACTCAGATCTCCCCACGGCCCCAACCTGAAAGTGTCAGCTGTA  1237
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1830  TCTCTTTGACAACAGTAAAATCACCTATGAGACTCAGATCTCCCCACGGCCCCAACCTGAAAGTGTCAGCTGTA  1903

Query 1238  TCCTTCAAGAGCCCAAGAGGAATCTCGCCTTCTTCCAGCTGAGGAAGGTGTGGGGCCAGGTCTGGCACAGCATC  1311
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1904  TCCTTCAAGAGCCCAAGAGGAATCTCGCCTTCTTCCAGCTGAGGAAGGTGTGGGGCCAGGTCTGGCACAGCATC  1977

Query 1312  CAGACCCTGAAGGAAGATTGCAACCGGCTGCAGCAGGGACAGCGAGCCGCCATGATGAATCTCCTCCGAAACAA  1385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1978  CAGACCCTGAAGGAAGATTGCAACCGGCTGCAGCAGGGACAGCGAGCCGCCATGATGAATCTCCTCCGAAACAA  2051

Query 1386  CAGCTGCCTCTCCAAAATGAAGAATTCCATGGCTTCCATGTCTCAGCAGCTCAAGGCCAAGTTGGATTTCTTCA  1459
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2052  CAGCTGCCTCTCCAAAATGAAGAATTCCATGGCTTCCATGTCTCAGCAGCTCAAGGCCAAGTTGGATTTCTTCA  2125

Query 1460  AAACCAGCATCCAGATTGACCTGGAGAAGTACAGCGAGCAAACCGAGTTTGGGATCACATCAGATAAACTGCTG  1533
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 
Sbjct 2126  AAACCAGCATCCAGATTGACCTGGAGAAGTACAGCGAGCAAACCGAGTTTGGGATCA-----------------  2182

Query 1534  CTGGCCTGGAGGGAAATGGAGCAGGCTGTGGAGCTCTGTGGGCGGGAGAACGAAGTGAAACTCCTGGTAGAACG  1607
                                                         |||||||||||||||||||||||||||||
Sbjct 2183  ---------------------------------------------GAGAACGAAGTGAAACTCCTGGTAGAACG  2211

Query 1608  GATGATGGCTCTGCAGACCGACATTGTGGACTTACAGAGGAGCCCCATGGGCCGGAAGCAGGGGGGAACGCTGG  1681
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2212  GATGATGGCTCTGCAGACCGACATTGTGGACTTACAGAGGAGCCCCATGGGCCGGAAGCAGGGGGGAACGCTGG  2285

Query 1682  ACGACCTAGAGGAGCAAGCAAGGGAGCTGTACAGGAGACTAAGGGAAAAACCTCGAGACCAGCGAACTGAGGGT  1755
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2286  ACGACCTAGAGGAGCAAGCAAGGGAGCTGTACAGGAGACTAAGGGAAAAACCTCGAGACCAGCGAACTGAGGGT  2359

Query 1756  GACAGTCAGGAAATGGTACGGCTGCTGCTTCAGGCAATTCAGAGCTTCGAGAAGAAAGTGCGAGTGATCTATAC  1829
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2360  GACAGTCAGGAAATGGTACGGCTGCTGCTTCAGGCAATTCAGAGCTTCGAGAAGAAAGTGCGAGTGATCTATAC  2433

Query 1830  GCAGCTCAGTAAAACTGTGGTTTGCAAGCAGAAGGCGCTGGAACTGTTGCCCAAGGTGGAAGAGGTGGTGAGCT  1903
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2434  GCAGCTCAGTAAAACTGTGGTTTGCAAGCAGAAGGCGCTGGAACTGTTGCCCAAGGTGGAAGAGGTGGTGAGCT  2507

Query 1904  TAATGAATGAGGATGAGAAGACTGTTGTCCGGCTGCAGGAGAAGCGGCAGAAGGAGCTCTGGAATCTCCTGAAG  1977
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2508  TAATGAATGAGGATGAGAAGACTGTTGTCCGGCTGCAGGAGAAGCGGCAGAAGGAGCTCTGGAATCTCCTGAAG  2581

Query 1978  ATTGCTTGTAGCAAGGTCCGTGGTCCTGTCAGTGGAAGCCCGGATAGCATGAATGCCTCTCGACTTAGCCAGCC  2051
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2582  ATTGCTTGTAGCAAGGTCCGTGGTCCTGTCAGTGGAAGCCCGGATAGCATGAATGCCTCTCGACTTAGCCAGCC  2655

Query 2052  TGGGCAGCTGATGTCTCAGCCCTCCACGGCCTCCAACAGCTTACCTGAGCCAGCCAAGAAGAGTGAAGAACTGG  2125
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2656  TGGGCAGCTGATGTCTCAGCCCTCCACGGCCTCCAACAGCTTACCTGAGCCAGCCAAGAAGAGTGAAGAACTGG  2729

Query 2126  TGGCTGAAGCACATAACCTCTGCACCCTGCTAGAAAATGCCATACAGGACACTGTGAGGGAACAAGACCAGAGT  2199
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2730  TGGCTGAAGCACATAACCTCTGCACCCTGCTAGAAAATGCCATACAGGACACTGTGAGGGAACAAGACCAGAGT  2803

Query 2200  TTCACGGCCCTAGACTGGAGCTGGTTACAGACGGAAGAAGAAGAGCACAGCTGCCTGGAGCAGGCCTCA-----  2268
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
Sbjct 2804  TTCACGGCCCTAGACTGGAGCTGGTTACAGACGGAAGAAGAAGAGCACAGCTGCCTGGAGCAGGCCTCATGATG  2877

Query 2269  --------------------------------------------------------------------------  2268
                                                                                      
Sbjct 2878  TGGGGGGACTCGACCCCCTGACATGGGGCAGCCCATAGCAGGCCTTGTGCAGTGGGGGGACTCGACCCCCTGAC  2951

Query 2269  --------------------------------------------------------------------------  2268
                                                                                      
Sbjct 2952  ATGGGGCTGCCTGGAGCAGGCCGCGTGACGTGGGGCTGCCTGGCCGCGGCTCTCACATGGTGGTTCCTGCTGCA  3025

Query 2269  --------------------------------------------------------------------------  2268
                                                                                      
Sbjct 3026  CTGATGGCCCAGGGGTCTCTGGTATCCAGATGGAGCTCTCGCTTCCTCAGCAGCTGTGACTTTCACCCAGGACC  3099

Query 2269  --------------------------------------------------------------------------  2268
                                                                                      
Sbjct 3100  CAGGACGCAGCCCTCCGTGGGCACTGCCGGCGCCTTGTCTGCACACTGGAGGTCCTCCATTACAGAGGCCCAGC  3173

Query 2269  --------------------------------------------------------------------------  2268
                                                                                      
Sbjct 3174  GCACATCGCTGGCCCCACAAACGTTCAGGGGTACAGCCATGGCAGCTCCTTCCTCTGCCGTGAGAAAAGTGCTT  3247

Query 2269  --------------------------------------------------------------------------  2268
                                                                                      
Sbjct 3248  GGAGTACGGTTTGCCACACACGTGACTGGACAGTGTCCAATTCAAATCTTTCAGGGCAGAGTCCGAGCAGCGCT  3321

Query 2269  --------------------------------------------------------------------------  2268
                                                                                      
Sbjct 3322  TGGTGACAGCCTGTCCTCTCCTGCTCTCCAAAGGCCCTGCTCCCTGTCCTCTCTCACTTTACAGCTTGTGTTTC  3395

Query 2269  --------------------------------------------------------------------------  2268
                                                                                      
Sbjct 3396  TTCTGGATTCAGCTTCTCCTAAACAGACAGTTTAATTATAGTTGCGGCCTGGCCCCATCCTCACTTCCTCTTTT  3469

Query 2269  --------------------------------------------------------------------------  2268
                                                                                      
Sbjct 3470  TATTTCACTGCTGCTAAAATTGTGTTTTTACCTACTACTTTGGTGGTTGTCCTCTTTTCGGCAAAGTTGGAGCG  3543

Query 2269  --------------------------------------------------------------------------  2268
                                                                                      
Sbjct 3544  AGTGCCAAGCTCTCCATCTGTGGTCCTTTCTGCCAAGAGCGACTCATAGTAACCAGGATGGGAGAGCAGCTGCC  3617

Query 2269  --------------------------------------------------------------------------  2268
                                                                                      
Sbjct 3618  TTATTCTGAATCCCAAAAATTACTTGGGGGTGATTGTCACAGAGGAGGGACAGAAAGGGTATCTGCTGACCACC  3691

Query 2269  --------------------------------------------------------------------------  2268
                                                                                      
Sbjct 3692  AGCCTGCCTACCCATGCCCATGTCTCCATTCCTGCTCAAGCGTGTGTGCTGGGCCGGGGAGTCCCTGTCTCTCA  3765

Query 2269  --------------------------------------------------------------------------  2268
                                                                                      
Sbjct 3766  CAGCATCTAGCAGTATTATTAAATGGATTCATTTTAAAAATAGCTCCTATATTTTGTAACATGTCTCAAACACT  3839

Query 2269  --------------------------------------------------------------------------  2268
                                                                                      
Sbjct 3840  CATACTGGGTTCCACAATCCACTGTTAGAATACCTATGGTTAGGGCTTCTGAACTAAAATAATGGAAAATTTTA  3913

Query 2269  --------------------------------------------------------------------------  2268
                                                                                      
Sbjct 3914  ACAATTTGTATAGTGCCTGGATCATTACTAGTGCCATAACCCTGCTTCTTCAACATTTCACAGAACTTCTCTTT  3987

Query 2269  --------------------------------------------------------------------------  2268
                                                                                      
Sbjct 3988  TATATAAAGGCAAGAGCACAAAATGAGTTCAGATGATCACAAACAGGTGAGTTTTGTTGGAGAAGAAAGTTGGA  4061

Query 2269  --------------------------------------------------------------------------  2268
                                                                                      
Sbjct 4062  GTAGGAGACTTTCACAAGTGGTTTCCATGGAGATAGAATGAAGCATTCTGTGGTCAAGTAAGTTTAGGGAGCTA  4135

Query 2269  --------------------------------------------------------------------------  2268
                                                                                      
Sbjct 4136  TTCATGTTTCACTTGCTTTGTGGAGATTCACACTATGCACTGGGAAAGTATCTGAAAAGTCTTATAATAAAGAA  4209

Query 2269  --------------------------------------------------------------------------  2268
                                                                                      
Sbjct 4210  ACAGGCTTAACTTTGTGTAAGAACACTGTTTATCAATGTCATTTGGCTATAGAAACATTTTCTCCTGCTGATTG  4283

Query 2269  ---------------------------------------------------------------  2268
                                                                           
Sbjct 4284  TGTGTGTGAAACATGTATTAACATTCCAATGAACTAGCATTTAATAAAGCACAATTTTGGAAA  4346