Nucleotide Global Alignment

Description

Query:
TRCN0000488070
Subject:
XM_017317838.1
Aligned Length:
2387
Identities:
2083
Gaps:
67

Alignment

Query    1  ATGGACTCCAAAGAATCATTAACT---CCTGGTAGAGAAGAAAACCCCAGCAGTGTGCTTGCTCAGGAGAGGGG  71
            |||||||||||||||||.|||.||   |||||||||||.|||..||||||||||.||||||..|.||.||||||
Sbjct    1  ATGGACTCCAAAGAATCCTTAGCTCCCCCTGGTAGAGACGAAGTCCCCAGCAGTTTGCTTGGCCGGGGGAGGGG  74

Query   72  AGATGTGATGGACTTCTATAAAACCCTAAGAGGAGGAGCTACTGTGAAGGTTTCTGCGTCTTCACCCTCACTGG  145
            |...|||||||||||.|||||||||||.||.||.||||||||.||.||||||||||||||||||||||||.|||
Sbjct   75  AAGCGTGATGGACTTGTATAAAACCCTGAGGGGTGGAGCTACAGTCAAGGTTTCTGCGTCTTCACCCTCAGTGG  148

Query  146  CTGTCGCTTCTCAATCAGACTCCAAGCAGC-GAAGACTTTTGGTTGATTTTCCAAAAGGCTCAGTAAGCAATGC  218
            |||..||||||||..||||.|||||||||| ||.|| ||.|..||||||||.||||||||||||.|||||||||
Sbjct  149  CTGCTGCTTCTCAGGCAGATTCCAAGCAGCAGAGGA-TTCTCCTTGATTTTTCAAAAGGCTCAGCAAGCAATGC  221

Query  219  GCA---------------------------------------------------GCAGCCAGATCTGTCCAAAG  241
            |||                                                   ||||||||||.|.|||||||
Sbjct  222  GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCAGCCAGATTTATCCAAAG  295

Query  242  CAGTTTCACTCTCAATGGGACTGTATATGGGAGAGACAGAAACAAAAGTGATGGGAAATGACCTGGGATTCCCA  315
            |.||||||||.||.|||||||||||||||||||||||.|||||||||||||||||.||||||.||||.|.||||
Sbjct  296  CCGTTTCACTGTCCATGGGACTGTATATGGGAGAGACCGAAACAAAAGTGATGGGGAATGACTTGGGCTACCCA  369

Query  316  CAGCAGGGCCAAATCAGCCTTTCCTCGGGGGAAACAGACTTAAAGCTTTTGGAAGAAAGCATTGCAAACCTCAA  389
            |||||||||||..|..||||.|||||.||||||||||||||...||||.|||||||||||||||||||||||||
Sbjct  370  CAGCAGGGCCAGCTTGGCCTCTCCTCTGGGGAAACAGACTTTCGGCTTCTGGAAGAAAGCATTGCAAACCTCAA  443

Query  390  TAGGTCGACCAGTGTTCCAGAGAACCCCAAGAGTTCAGCATCCACTGCTGTGTCTGCTGCCCCCACAGAGAAGG  463
            ||||||||||||...||||||||||||||||||||||.||.|..|.||||.||.||||.||||.||||||||||
Sbjct  444  TAGGTCGACCAGCCGTCCAGAGAACCCCAAGAGTTCAACACCTGCAGCTGGGTGTGCTACCCCGACAGAGAAGG  517

Query  464  AGTTTCCAAAAACTCACTCTGATGTATCTTCAGAACAGCAACATTTGAAGGGCCAGACTGGCACCAACGGTGGC  537
            |||||||..|.||||||||||||..||||||||||||||||.||...||..|||||.|||||||||||||||||
Sbjct  518  AGTTTCCCCAGACTCACTCTGATCCATCTTCAGAACAGCAAAATAGAAAAAGCCAGCCTGGCACCAACGGTGGC  591

Query  538  AATGTGAAATTGTATACCACAGACCAAAGCACCTTTGACATTTTGCAGGATTTGGAGTTTTCTTCTGGGTCCCC  611
            |.|||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||.|.||||||||
Sbjct  592  AGTGTGAAATTGTATACCACAGACCAAAGCACCTTTGACATCTTGCAGGATTTGGAGTTTTCTGCCGGGTCCCC  665

Query  612  AGGTAAAGAGACGAATGAGAGTCCTTGGAGATCAGACCTGTTGATAGATGAAAACTGTTTGCTTTCTCCTCTGG  685
            ||||||||||||.||.||||||||||||||.||||||||||||||||||||||||   ||||||||||||.|||
Sbjct  666  AGGTAAAGAGACAAACGAGAGTCCTTGGAGGTCAGACCTGTTGATAGATGAAAAC---TTGCTTTCTCCTTTGG  736

Query  686  CGGGAGAAGACGATTCATTCCTTTTGGAAGGAAACTCGAATGAGGACTGCAAGCCTCTCATTTTACCGGACACT  759
            ||||||||||.|||.||||||||.|||||||..||..|||||||||.|||||||||||.|||||||||||||||
Sbjct  737  CGGGAGAAGATGATCCATTCCTTCTGGAAGGGGACGTGAATGAGGATTGCAAGCCTCTTATTTTACCGGACACT  810

Query  760  AAACCCAAAATTAAGGATAATGGAGATCTGGTTTTGTCAAGCCCCAGTAATGTAACACTGCCCCAAGTGAAAAC  833
            |||||.||||||.||||||.|||||||....|.||.|||||||||||.|.|||..|||||||||||||||||||
Sbjct  811  AAACCTAAAATTCAGGATACTGGAGATACAATCTTATCAAGCCCCAGCAGTGTGGCACTGCCCCAAGTGAAAAC  884

Query  834  AGAAAAAGAAGATTTCATCGAACTCTGCACCCCTGGGGTAATTAAGCAAGAGAAACTGGGCACAGTTTACTGTC  907
            |||.|||||.||||||||.||.||.||||||||||||||||||||||||||||||||||||.|.|||||.||.|
Sbjct  885  AGAGAAAGATGATTTCATTGAGCTTTGCACCCCTGGGGTAATTAAGCAAGAGAAACTGGGCCCGGTTTATTGCC  958

Query  908  AGGCAAGCTTTCCTGGAGCAAATATAATTGGTAATAAAATGTCTGCCATTTCTGTTCATGGTGTGAGTACCTCT  981
            |||||||||||.||||..|||||||||||||.|||||||||||||||||||||||||||||.||||||||||||
Sbjct  959  AGGCAAGCTTTTCTGGGACAAATATAATTGGGAATAAAATGTCTGCCATTTCTGTTCATGGCGTGAGTACCTCT  1032

Query  982  GGAGGACAGATGTACCACTATGACATGAATACAGCATCCCTTTCTCAACAGCAGGATCAGAAGCCTATTCTTAA  1055
            |||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||.||.||||
Sbjct 1033  GGAGGACAGATGTACCACTATGACATGAATACAGCATCCCTTTCTCAGCAGCAGGATCAGAAGCCTGTTTTTAA  1106

Query 1056  TGTCATTCCACCAATTCCCGTTGGTTCCGAAAATTGGAATAGGTGCCAAGGATCTGGAGATGACAACTTGACTT  1129
            ||||||||||||||||||.||||||||.|||||.|||||||||||||||||.||||||||.||||||.||||||
Sbjct 1107  TGTCATTCCACCAATTCCTGTTGGTTCTGAAAACTGGAATAGGTGCCAAGGGTCTGGAGAGGACAACCTGACTT  1180

Query 1130  CTCTGGGGACTCTGAACTTCCCTGGTCGAACAGTTTTTTCTAATGGCTATTCAAGCCCCAGCATGAGACCAGAT  1203
            |..|||||.||.||||||||.|.||.||..||||.|||||||||||.|||||||||||..|.||||||||||||
Sbjct 1181  CCTTGGGGGCTATGAACTTCGCAGGCCGCTCAGTGTTTTCTAATGGATATTCAAGCCCTGGAATGAGACCAGAT  1254

Query 1204  GTAAGCTCTCCTCCATCCAGCTCCTCAACAGCAACAACAGGACCACCTCCCAAACTCTGCCTGGTGTGCTCTGA  1277
            ||.||.||||||||.|||||||||||.||||   ||||.||||||||||||||||||||||||||||||||.||
Sbjct 1255  GTGAGTTCTCCTCCGTCCAGCTCCTCCACAG---CAACGGGACCACCTCCCAAACTCTGCCTGGTGTGCTCCGA  1325

Query 1278  TGAAGCTTCAGGATGTCATTATGGAGTCTTAACTTGTGGAAGCTGTAAAGTTTTCTTCAAAAGAGCAGTGGAAG  1351
            |||||||||.|||||.||||||||.||..|.||.|||||||||||||||||.|||||.||||||||||||||||
Sbjct 1326  TGAAGCTTCGGGATGCCATTATGGGGTGCTGACGTGTGGAAGCTGTAAAGTCTTCTTTAAAAGAGCAGTGGAAG  1399

Query 1352  GACAGCACAATTACCTATGTGCTGGAAGGAATGATTGCATCATCGATAAAATTCGAAGAAAAAACTGCCCAGCA  1425
            ||||||||||||||||.|||||||||||.||||||||||||||.|||||||||||||||||||||||.||||||
Sbjct 1400  GACAGCACAATTACCTTTGTGCTGGAAGAAATGATTGCATCATTGATAAAATTCGAAGAAAAAACTGTCCAGCA  1473

Query 1426  TGCCGCTATCGAAAATGTCTTCAGGCTGGAATGAACCTGGAAGCTCGAAAAACAAAGAAAAAAATAAAAGGAAT  1499
            |||||||||||||||||||||||.|||||||||||||||||||||||||||||.|||||||||||.||||||||
Sbjct 1474  TGCCGCTATCGAAAATGTCTTCAAGCTGGAATGAACCTGGAAGCTCGAAAAACGAAGAAAAAAATTAAAGGAAT  1547

Query 1500  TCAGCAGGCCACTACAGGAGTCTCACAAGAAACCTCTGAAAATCCTGGTAACAAAACAATAGTTCCTGCAACGT  1573
            ||||||.||||||.||||||||||||||||.||.||||||||   .|.|||||||||||||||||||||..||.
Sbjct 1548  TCAGCAAGCCACTGCAGGAGTCTCACAAGACACTTCTGAAAA---CGCTAACAAAACAATAGTTCCTGCCGCGC  1618

Query 1574  TACCACAACTCACCCCTACCCTGGTGTCACTGTTGGAGGTTATTGAACCTGAAGTGTTATATGCAGGATATGAT  1647
            |.|||||.||.|||||||||||||||||||||.|||||||.||.||.|||||.||||||||||||||||||||.
Sbjct 1619  TGCCACAGCTTACCCCTACCCTGGTGTCACTGCTGGAGGTGATCGAGCCTGAGGTGTTATATGCAGGATATGAC  1692

Query 1648  AGCTCTGTTCCAGACTCAACTTGGAGGATCATGACTACGCTCAACATGTTAGGAGGGCGGCAAGTGATTGCAGC  1721
            ||||||||||||||||||.|.|||||.||.|||||.|||||||||||||||||.|||||.|||||||||||.||
Sbjct 1693  AGCTCTGTTCCAGACTCAGCATGGAGAATTATGACCACGCTCAACATGTTAGGTGGGCGCCAAGTGATTGCCGC  1766

Query 1722  AGTGAAATGGGCAAAGGCAATACCAGGTTTCAGGAACTTACACCTGGATGACCAAATGACCCTACTGCAGTACT  1795
            ||||||||||||||||||.||||||||.|||||.|||||||||||||||||||||||||||||.||.|||||||
Sbjct 1767  AGTGAAATGGGCAAAGGCGATACCAGGATTCAGAAACTTACACCTGGATGACCAAATGACCCTTCTACAGTACT  1840

Query 1796  CCTGGATGTTTCTTATGGCATTTGCTCTGGGGTGGAGATCATATAGACAATCAAGTGCAAACCTGCTGTGTTTT  1869
            |.|||||||||||.|||||||||||.|||||.|||||||||||.||||||.||||||.|||||||||.||.|||
Sbjct 1841  CATGGATGTTTCTCATGGCATTTGCCCTGGGTTGGAGATCATACAGACAAGCAAGTGGAAACCTGCTATGCTTT  1914

Query 1870  GCTCCTGATCTGATTATTAATGAGCAGAGAATGACTCTACCCTGCATGTACGACCAATGTAAACACATGCTGTA  1943
            ||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||.
Sbjct 1915  GCTCCTGATCTGATTATTAATGAGCAGAGAATGACTCTACCCTGCATGTATGACCAATGTAAACACATGCTGTT  1988

Query 1944  TGTTTCCTCTGAGTTACACAGGCTTCAGGTATCTTATGAAGAGTATCTCTGTATGAAAACCTTACTGCTTCTCT  2017
            |.|.|||.||||.|||||.||..|.||||||||.||||||||||||||||||||||||||||||||||||||||
Sbjct 1989  TATCTCCACTGAATTACAAAGATTGCAGGTATCCTATGAAGAGTATCTCTGTATGAAAACCTTACTGCTTCTCT  2062

Query 2018  CTTCAGTTCCTAAGGACGGTCTGAAGAGCCAAGAGCTATTTGATGAAATTAGAATGACCTACATCAAAGAGCTA  2091
            |.||||||||||||||.||||||||||||||||||.||||||||||.|||.|||||||.||.||||||||||||
Sbjct 2063  CCTCAGTTCCTAAGGAAGGTCTGAAGAGCCAAGAGTTATTTGATGAGATTCGAATGACTTATATCAAAGAGCTA  2136

Query 2092  GGAAAAGCCATTGTCAAGAGGGAAGGAAACTCCAGCCAGAACTGGCAGCGGTTTTATCAACTGACAAAACTCTT  2165
            |||||||||||||||||.|||||||||||||||||.|||||.|||||||||||||||||||||||||||||.||
Sbjct 2137  GGAAAAGCCATTGTCAAAAGGGAAGGAAACTCCAGTCAGAATTGGCAGCGGTTTTATCAACTGACAAAACTTTT  2210

Query 2166  GGATTCTATGCATGAAGTGGTTGAAAATCTCCTTAACTATTGCTTCCAAACATTTTTGGATAAGACCATGAGTA  2239
            |||.||.||||||||.|||||||||||||||||||.|||.||||||||||||||||||||||||.|||||||||
Sbjct 2211  GGACTCCATGCATGATGTGGTTGAAAATCTCCTTAGCTACTGCTTCCAAACATTTTTGGATAAGTCCATGAGTA  2284

Query 2240  TTGAATTCCCCGAGATGTTAGCTGAAATCATCACCAATCAGATACCAAAATATTCAAACGGAAATATCAAAAAA  2313
            ||||||||||.|||||||||||||||||||||||.|||||||||||||||||.|||||.||||||||||||||.
Sbjct 2285  TTGAATTCCCAGAGATGTTAGCTGAAATCATCACTAATCAGATACCAAAATACTCAAATGGAAATATCAAAAAG  2358

Query 2314  CTTCTGTTTCATCA-AAAG  2331
            |||||||||||||| ||| 
Sbjct 2359  CTTCTGTTTCATCAGAAA-  2376

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.