Construct: ORF TRCN0000488070

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF021493.1_s317c1
DNA Barcode:
CTCCATCCTAACTGATTCTATTAG
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Has stop codon in insert

Originally Annotated References:

Gene:
NR3C1 (2908)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000488070
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 2908 NR3C1 nuclear receptor subfamily ... NM_000176.3 99.9% 99.8% 1051T>C;2298T>C
2 human 2908 NR3C1 nuclear receptor subfamily ... NM_001018074.1 99.9% 99.8% 1051T>C;2298T>C
3 human 2908 NR3C1 nuclear receptor subfamily ... NM_001018075.1 99.9% 99.8% 1051T>C;2298T>C
4 human 2908 NR3C1 nuclear receptor subfamily ... NM_001018076.2 99.9% 99.8% 1051T>C;2298T>C
5 human 2908 NR3C1 nuclear receptor subfamily ... NM_001018077.1 99.9% 99.8% 1051T>C;2298T>C
6 human 2908 NR3C1 nuclear receptor subfamily ... NM_001364180.2 99.9% 99.8% 1051T>C;2298T>C
7 human 2908 NR3C1 nuclear receptor subfamily ... NM_001364181.2 99.9% 99.8% 1051T>C;2298T>C
8 human 2908 NR3C1 nuclear receptor subfamily ... NM_001364182.1 99.9% 99.8% 1051T>C;2298T>C
9 human 2908 NR3C1 nuclear receptor subfamily ... NM_001024094.2 99.7% 99.7% 1051T>C;1352_1354delGTA;2301T>C
10 human 2908 NR3C1 nuclear receptor subfamily ... NM_001364183.2 99.7% 99.7% 1051T>C;1352_1354delGTA;2301T>C
11 human 2908 NR3C1 nuclear receptor subfamily ... NM_001364184.2 99.7% 99.7% 1051T>C;1352_1354delGTA;2301T>C
12 human 2908 NR3C1 nuclear receptor subfamily ... NM_001364185.1 99.7% 99.7% 1051T>C;1352_1354delGTA;2301T>C
13 human 2908 NR3C1 nuclear receptor subfamily ... XM_005268422.3 99.7% 99.7% 1051T>C;1352_1354delGTA;2301T>C
14 human 2908 NR3C1 nuclear receptor subfamily ... XM_005268423.3 99.7% 99.7% 1051T>C;1352_1354delGTA;2301T>C
15 human 2908 NR3C1 nuclear receptor subfamily ... NM_001204258.2 96.5% 96.5% 0_1ins78;973T>C;2220T>C
16 human 2908 NR3C1 nuclear receptor subfamily ... NM_001020825.2 94.8% 92.6% (many diffs)
17 human 2908 NR3C1 nuclear receptor subfamily ... NM_001204259.2 88.9% 88.9% 0_1ins255;796T>C;2043T>C
18 human 2908 NR3C1 nuclear receptor subfamily ... NM_001204260.2 88.4% 88.4% 0_1ins267;784T>C;2031T>C
19 human 2908 NR3C1 nuclear receptor subfamily ... NM_001204261.2 87.4% 87.3% 0_1ins291;760T>C;2007T>C
20 human 2908 NR3C1 nuclear receptor subfamily ... NM_001204265.2 86.8% 86.6% (many diffs)
21 human 2908 NR3C1 nuclear receptor subfamily ... NM_001204262.2 59.3% 59.3% 0_1ins945;106T>C;1353T>C
22 human 2908 NR3C1 nuclear receptor subfamily ... NM_001204263.2 57.4% 57.4% 0_1ins990;61T>C;1308T>C
23 human 2908 NR3C1 nuclear receptor subfamily ... NM_001204264.2 56.7% 56.7% 0_1ins1005;46T>C;1293T>C
24 human 2908 NR3C1 nuclear receptor subfamily ... XM_011537637.3 48.8% 48.9% 0_1ins1191;1107T>C
25 human 2908 NR3C1 nuclear receptor subfamily ... NR_157096.2 19.3% (many diffs)
26 mouse 14815 Nr3c1 nuclear receptor subfamily ... NM_008173.3 87.2% 88.1% (many diffs)
27 mouse 14815 Nr3c1 nuclear receptor subfamily ... XM_006525666.3 87.2% 88.1% (many diffs)
28 mouse 14815 Nr3c1 nuclear receptor subfamily ... XM_017317835.1 87.2% 88.1% (many diffs)
29 mouse 14815 Nr3c1 nuclear receptor subfamily ... XM_017317836.1 87.2% 88.1% (many diffs)
30 mouse 14815 Nr3c1 nuclear receptor subfamily ... XM_017317837.1 87.2% 88.1% (many diffs)
31 mouse 14815 Nr3c1 nuclear receptor subfamily ... XM_017317838.1 87.2% 88.1% (many diffs)
32 mouse 14815 Nr3c1 nuclear receptor subfamily ... XM_006525658.1 87.1% 88% (many diffs)
33 mouse 14815 Nr3c1 nuclear receptor subfamily ... XM_006525659.3 87.1% 88% (many diffs)
34 mouse 14815 Nr3c1 nuclear receptor subfamily ... XM_006525660.2 87.1% 88% (many diffs)
35 mouse 14815 Nr3c1 nuclear receptor subfamily ... XM_006525661.2 87.1% 88% (many diffs)
36 mouse 14815 Nr3c1 nuclear receptor subfamily ... XM_006525662.1 87.1% 88% (many diffs)
37 mouse 14815 Nr3c1 nuclear receptor subfamily ... XM_006525663.3 87.1% 88% (many diffs)
38 mouse 14815 Nr3c1 nuclear receptor subfamily ... XM_006525664.1 87.1% 88% (many diffs)
39 mouse 14815 Nr3c1 nuclear receptor subfamily ... XM_006525665.3 87.1% 88% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2400
ORF length:
2331
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61caggcaccat ggactccaaa gaatcattaa ctcctggtag agaagaaaac cccagcagtg
121tgcttgctca ggagagggga gatgtgatgg acttctataa aaccctaaga ggaggagcta
181ctgtgaaggt ttctgcgtct tcaccctcac tggctgtcgc ttctcaatca gactccaagc
241agcgaagact tttggttgat tttccaaaag gctcagtaag caatgcgcag cagccagatc
301tgtccaaagc agtttcactc tcaatgggac tgtatatggg agagacagaa acaaaagtga
361tgggaaatga cctgggattc ccacagcagg gccaaatcag cctttcctcg ggggaaacag
421acttaaagct tttggaagaa agcattgcaa acctcaatag gtcgaccagt gttccagaga
481accccaagag ttcagcatcc actgctgtgt ctgctgcccc cacagagaag gagtttccaa
541aaactcactc tgatgtatct tcagaacagc aacatttgaa gggccagact ggcaccaacg
601gtggcaatgt gaaattgtat accacagacc aaagcacctt tgacattttg caggatttgg
661agttttcttc tgggtcccca ggtaaagaga cgaatgagag tccttggaga tcagacctgt
721tgatagatga aaactgtttg ctttctcctc tggcgggaga agacgattca ttccttttgg
781aaggaaactc gaatgaggac tgcaagcctc tcattttacc ggacactaaa cccaaaatta
841aggataatgg agatctggtt ttgtcaagcc ccagtaatgt aacactgccc caagtgaaaa
901cagaaaaaga agatttcatc gaactctgca cccctggggt aattaagcaa gagaaactgg
961gcacagttta ctgtcaggca agctttcctg gagcaaatat aattggtaat aaaatgtctg
1021ccatttctgt tcatggtgtg agtacctctg gaggacagat gtaccactat gacatgaata
1081cagcatccct ttctcaacag caggatcaga agcctattct taatgtcatt ccaccaattc
1141ccgttggttc cgaaaattgg aataggtgcc aaggatctgg agatgacaac ttgacttctc
1201tggggactct gaacttccct ggtcgaacag ttttttctaa tggctattca agccccagca
1261tgagaccaga tgtaagctct cctccatcca gctcctcaac agcaacaaca ggaccacctc
1321ccaaactctg cctggtgtgc tctgatgaag cttcaggatg tcattatgga gtcttaactt
1381gtggaagctg taaagttttc ttcaaaagag cagtggaagg acagcacaat tacctatgtg
1441ctggaaggaa tgattgcatc atcgataaaa ttcgaagaaa aaactgccca gcatgccgct
1501atcgaaaatg tcttcaggct ggaatgaacc tggaagctcg aaaaacaaag aaaaaaataa
1561aaggaattca gcaggccact acaggagtct cacaagaaac ctctgaaaat cctggtaaca
1621aaacaatagt tcctgcaacg ttaccacaac tcacccctac cctggtgtca ctgttggagg
1681ttattgaacc tgaagtgtta tatgcaggat atgatagctc tgttccagac tcaacttgga
1741ggatcatgac tacgctcaac atgttaggag ggcggcaagt gattgcagca gtgaaatggg
1801caaaggcaat accaggtttc aggaacttac acctggatga ccaaatgacc ctactgcagt
1861actcctggat gtttcttatg gcatttgctc tggggtggag atcatataga caatcaagtg
1921caaacctgct gtgttttgct cctgatctga ttattaatga gcagagaatg actctaccct
1981gcatgtacga ccaatgtaaa cacatgctgt atgtttcctc tgagttacac aggcttcagg
2041tatcttatga agagtatctc tgtatgaaaa CCTTACTGCT TCTCTCTTCA GTTCCTAAGG
2101ACGGTCTGAA GAGCCAAGAG CTATTTGATG AAATTAGAAT GACCTACATC AAAGAGCTAG
2161GAAAAGCCAT TGTCAAGAGG GAAGGAAACT CCAGCCAGAA CTGGCAGCGG TTTTATCAAC
2221TGACAAAACT CTTGGATTCT ATGCATGAAG TGGTTGAAAA TCTCCTTAAC TATTGCTTCC
2281AAACATTTTT GGATAAGACC ATGAGTATTG AATTCCCCGA GATGTTAGCT GAAATCATCA
2341CCAATCAGAT ACCAAAATAT TCAAACGGAA ATATCAAAAA ACTTCTGTTT CATCAAAAGT
2401GAGACCCAGC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA GCCTATCCCT AACCCTCTCC
2461TCGGTCTCGA TTCTACGTAG TAATGAACTA GTCCGTAACT TGAAAGTATT TCGATTTCTT
2521GGCTTTATAT ATCTTGTGGA AAGGACGACT CCATCCTAAC TGATTCTATT AGACGCGTTA
2581AGTCgacaat caacctctgg attacaaaat ttgtgaaaga tt

Download FASTA (ORF) (Full)