Nucleotide Global Alignment
Description
- Query:
- TRCN0000488229
- Subject:
- XR_001779956.1
- Aligned Length:
- 3997
- Identities:
- 640
- Gaps:
- 3267
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATACTTCCCAGTTTGGGTATGATGCTGACCTAAAGCTGATGGGTCTGTGTACACTGGAAGAGGTGGGGCTCATG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGTAATGCAGCATCAGAGGGAGGAATTGCTTATGTAACTTGGACAACAGATTTAGCAGCGCGAAAAGAGGCAGA 148
Query 1 --------ATGGGAGCAGTAAGCTGTCGGCAGGGGCAGCACACCCAGCAGGGGGAACACACCCGGGTGGCTGTC 66
||||||||||||||||||||||||||.| ||||||||||||||.|||..
Sbjct 149 GGCTGGAAATGGGAGCAGTAAGCTGTCGGCAGGGAC------------------AACACACCCGGGTGTCTGCT 204
Query 67 CCTCACAAGCAGGGTGGCAACATCCGGGGTCCCTGGGCCCGAGGCTGGAAGAGCCTCTGGACAGGTTTGGGAAC 140
|||||.||||||||||.||||||||.|||||.|||||.||.|||||||||||||||||||...|||.||||.||
Sbjct 205 CCTCAGAAGCAGGGTGACAACATCCAGGGTCACTGGGTCCAAGGCTGGAAGAGCCTCTGGTGTGGTATGGGGAC 278
Query 141 CATCAGGTCAGATCTGGAAGAACTCTGGGAACTACGGGGGCACCACTATCTGCACCAGGA----ATCCCTAAAG 210
|||||||||||.||||||||||||.||||.|||||.|.||||.||.|..||.||.||||| .||| ||
Sbjct 279 CATCAGGTCAGGTCTGGAAGAACTATGGGGACTACAGAGGCATCAGTGCCTACATCAGGAGCTGCTCC----AG 348
Query 211 CCAGCCCCAGTACTGGTAGAGAAGCCTCTGCCAGAGTGGCCAGTGCCTCAGTTCATCAACCTCTTTCTACCAGA 284
|||||||||.|.||..||||||||||||.|.|.|||||||||||||||||||||||||.|||||||||||||||
Sbjct 349 CCAGCCCCACTGCTACTAGAGAAGCCTCAGTCTGAGTGGCCAGTGCCTCAGTTCATCAGCCTCTTTCTACCAGA 422
Query 285 GTTTCCCATTAGGCCCATTAGGGGGCAGCAGCAGCTGAAGATTTTAGGCCTCGTGGCTAAAGGCTCCTTTGGAA 358
|||||||.|.|||||..||||||.|||||||.|||||||||||||||||||.|||||||||||.||.|||||||
Sbjct 423 GTTTCCCGTGAGGCCTGTTAGGGAGCAGCAGGAGCTGAAGATTTTAGGCCTTGTGGCTAAAGGTTCGTTTGGAA 496
Query 359 CTGTCCTCAAGGTGCTAGATTGCACCCAGAAAGCTGTATTTGCAGTGAAGGTGGTGCCCAAGGTAAAGGTCCTA 432
|||||||.||.|||||||||||..|||||||||||||||||||||||||||||||||||||.|||||.||.|||
Sbjct 497 CTGTCCTGAAAGTGCTAGATTGTGCCCAGAAAGCTGTATTTGCAGTGAAGGTGGTGCCCAAAGTAAAAGTTCTA 570
Query 433 CAGAGGGATACCGTGAGGCAGTGCAAAGAGGAGGTTAGCATCCAGCGACAGATCAACCATCCCTTTGTACACAG 506
|||.|||||||..||||||||||||||||.|||||||||||||||
Sbjct 571 CAGCGGGATACGCTGAGGCAGTGCAAAGAAGAGGTTAGCATCCAG----------------------------- 615
Query 507 CTTGGGGGACAGCTGGCAGGGAAAACGGCACCTTTTCATTATGTGTAGCTACTGCAGCACAGATCTGTACTCCC 580
||||||||||||||||||..|||||.|||||||
Sbjct 616 -----------------------------------------TGTGTAGCTACTGCAGCATGGATCTCTACTCCC 648
Query 581 TTTGGTCGGCTGTTGGCTGCTTTCCTGAGGCTTCCATCCGTCTCTTTGCTGCCGAGTTGGTGCTGGTACTGTGT 654
|.|||||..|||||||.||.|||||.||||.|||.||||||||||||||.||.||..||||.||.|||||||||
Sbjct 649 TGTGGTCTACTGTTGGTTGGTTTCCAGAGGATTCTATCCGTCTCTTTGCAGCTGAACTGGTCCTTGTACTGTGT 722
Query 655 -------------------------------------------------------------------------- 654
Sbjct 723 AAGTGCAAATGTGGTAAAGGAAATAAAAAGGGGGAAATTAAGTTAGTGGGGAGGAGAAACAGAATTAATATTTA 796
Query 655 -------------------------------------------------------------------------- 654
Sbjct 797 ATTTTGGAAGTCAGGATAGAGGAGAGATAGGGGCTACAAAGAAACTGGCAGACACACCCATGCCCACTGTTCTC 870
Query 655 -------TATCTCCATGACTTGGGCATCATGCATCGAGATGTGA------------------------------ 691
||||||||.||||||||.|||||.||.||.|||||.|
Sbjct 871 CACAGGCTATCTCCACGACTTGGGTATCATCCACCGTGATGTAAAGGTAGAGTTAAGTCTTTTCTCTTAAGTTG 944
Query 692 -------------------------------------------------------------------------- 691
Sbjct 945 AGCAAGGATCTCAAGAAGTTTCCACAGATCTGAGAAGGCAGTAGGAAGCAGAGACGGTTATTTGGGTTCCTATG 1018
Query 692 -------------------------------------------------------------------------- 691
Sbjct 1019 GATGCGAAGGATTTGGGTGTGGGTCCTCCAAGTATAGGCTTGAGTGCTGAGTAGACTACCTTCTCCAGCTAGCA 1092
Query 692 -------------------------------------------------------------------------- 691
Sbjct 1093 GCTCTACGGGAAAGAATGCCAGGTGTGGTCATACATGTCTATTCCCCAGCACTGTTGGGAGGCAGGAGGAGTGC 1166
Query 692 -------------------------------------------------------------------------- 691
Sbjct 1167 CATATGTGAGGCTGGTATATAAAATTCCCAGCTGGCCTGAGCTACACAGTAACACCCTATGTCAAAAATAACAA 1240
Query 692 ---------------------------------------------------------------AGATGGAGAAT 702
|||||||||||
Sbjct 1241 CAATGAAAAACCAAATCAGAGCCAAAGGAAAAAGTAAGATAATGTCCTCTTGCCCATGATTTCAGATGGAGAAT 1314
Query 703 ATTCTTCTAGATGAACG--------------------------------------------------------- 719
||.||.||.||||||||
Sbjct 1315 ATCCTGCTGGATGAACGAGGTATGTCTTTTCCTTCTTTAGCCCCAGGACAAGTGGTACCTCTTAAAAAACAAAA 1388
Query 720 ------------------------------------------------------------AGGCCATCTGAAAC 733
|||||||||||||.
Sbjct 1389 CCAAAGTGAAACAAAAAACAAACAAACAAACATGGGTTGAACATAGTTTCCTTACTTCGTAGGCCATCTGAAAG 1462
Query 734 TGACAGACTTTGGTCTGTCCCGCCACGTGCCCCAGGGAGCTCAAGCCTACACTATCTGTGGCACTCTTCAGTAC 807
|||||||||||||||||||.||||||.|..||||||||||.|.|||||||||||||||.|||||||||||.|||
Sbjct 1463 TGACAGACTTTGGTCTGTCTCGCCACCTATCCCAGGGAGCACGAGCCTACACTATCTGCGGCACTCTTCAATAC 1536
Query 808 ATGGGTGAGAGAG--------GT--------------------------------------------------- 822
||||||||||||| ||
Sbjct 1537 ATGGGTGAGAGAGAAGCTAAAGTTGGTAGGGAAGGTGACTTAAGGATGTGAGTGACAGCCCGGTGTGGTGGCGC 1610
Query 823 -------------------------------------------------------------------------- 822
Sbjct 1611 ACGCCTTTAATCCCAGCACTAGGGAGGCAGAAGCAGGCAGATTTCTGAGTTCCAGGCCAGCCTGGTCTACAAAG 1684
Query 823 -------------------------------------------------------------------------- 822
Sbjct 1685 TGAGTTTCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAAACAAAAACAAAAAATAAATAAATGA 1758
Query 823 -------------------------------------------------------------------------- 822
Sbjct 1759 ATGAAAAGATGTGAGTGACAAGTACCTTTCGTGCCACAGCCCCAGAGGTCCTGAGTGGTGGGCCTTACAACCAC 1832
Query 823 -------------------------------------------------------------------------- 822
Sbjct 1833 ACTGCTGACTGGTGGTCCCTGGGTGTGTTGCTTTTCTCTCTGGCAACTGGTAAGGTGAGAGAATGGTTAGTGGT 1906
Query 823 -------------------------------------------------------------------------- 822
Sbjct 1907 GTTGAACAGGGAAGAGAGTTTTGCTTTGTGGTGGAAAAAGACCTTAGAAAGCCTTGCCTTCCCACCCTTTAACT 1980
Query 823 -------------------------------------------------------------------------- 822
Sbjct 1981 CAGTTTCCAGTGGCTGCAGAGAGAGATCATGTGGCTATGTTGGCAAGTGTGGCCCACTGTGAATCTGAGATCCC 2054
Query 823 -------------------------------------------------------------------------- 822
Sbjct 2055 AGCGTCTATTAATCAGGAGCTCTCACTCCTGCTCCATGAGCTCTTATGCCAGAACCCTCTGCATCGTCTACGAT 2128
Query 823 -------------------------------------------------------------------------- 822
Sbjct 2129 ACCTGCATCACTTCCAGGTCCACCCGTTCTTTCGGGGTGTAGCCTTTGACCCTGAGCTCCTACAGAAGCAGCCA 2202
Query 823 -------------------------------------------------------------------------- 822
Sbjct 2203 GTGAACTTTGTCATGGAGAAACAAGATACCTGGCCTAGTCCACTGGAGTCCATGTCCTTCGAGGACTTTGACTA 2276
Query 823 -------------------------------------------------------------------------- 822
Sbjct 2277 TGATCTGGAGTCCTTGGTCCACTCCATCTCTATTGATTCCTATTGATTCTCTAGTGTGGATAGGCACTCAGCCA 2350
Query 823 -------------------------------------------------------------------------- 822
Sbjct 2351 GAAACCACTCAGTACCACCATTATAATGATCCAGTTTTTACTTTGTTGTTCTATTGTAGGTACTGGGCTAGAGT 2424
Query 823 -------------------------------------------------------------------------- 822
Sbjct 2425 TTAATCTTTGGCATTCTGCAGCTGATAGCCAAAACTGCCCCTACGCTTTCCTATCATACAACCCCTCTCAGTTC 2498
Query 823 -------------------------------------------------------------------------- 822
Sbjct 2499 GGGTCAAGGCAATGGCCTTCACTTCTCCAGTACTTTCACTTGAGCTGCCAAACAAAGGCTTCTTGAACTTGACC 2572
Query 823 -------------------------------------------------------------------------- 822
Sbjct 2573 TTATTCATGTTTTTCTACCATACTTTTTTGGGCAATAATGAAACTCTGGGGACTTCCAAGGTGCTATTTAGATG 2646
Query 823 -------------------------------------------------------------------------- 822
Sbjct 2647 TTTTAACAAGTTAATCAGATGCCAGGTGGTGCCAGGTGGCACTTGTCCCTGCATTGAGGACACAGAGGCAGGTA 2720
Query 823 -------------------------------------------------------------------------- 822
Sbjct 2721 GATCTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTTCCAGGATACTCAGGAATACACAAAGAAACCCTGTCTC 2794
Query 823 -------------------------------------------------------------------------- 822
Sbjct 2795 AGGAAAAAAAAATTACAAGGATTATTAAATTGATTGTTTCTTCCATACAACCCAAGATTTAGAGTTGGTTTTGT 2868
Query 823 -------------------------------------------------------------------------- 822
Sbjct 2869 TTTTTTTCCGCTTTTGAACTGGACCAGCAGAGGATCAGGGGATCAGAAAATGAAGAAGGAAAGTATAGGATCAG 2942
Query 823 -------------------------------------------------------------------------- 822
Sbjct 2943 GTCTTGCCCAAGCTATATCTTATGCCACACCAAGCAGGCTTATTTTATTAAGTACAGCATCGCATATACAGGAA 3016
Query 823 -------------------------------------------------------------------------- 822
Sbjct 3017 AAAGGGGAAAAAGGGATAGAATCATCAAAAAACTGACTTAGAGTGGACTGAAGTCAGCAGGAAGCTAATCAGGC 3090
Query 823 -------------------------------------------------------------------------- 822
Sbjct 3091 AATGTTGAATGAAGGGAAACAAATGCATCACAGAGGAGCACATCGCAGCCTTGGGGCTAATAGCCTTGTAGGGG 3164
Query 823 -------------------------------------------------------------------------- 822
Sbjct 3165 GAAAGAGTTCATTTCTCATATATAAAGCAGCAGCTCCCCCAGGGTCCTGACCCCAGACCGTTATTGGCTTTGCT 3238
Query 823 -------------------------------------------------------------------------- 822
Sbjct 3239 AAGCATAGTCCTTAGTTTAGACAAGGAACTTCATTCCTCCACACATCAGGCCTCAGGGAAAACCTTAGGTTAGA 3312
Query 823 -------------------------------------------------------------------------- 822
Sbjct 3313 TCAGCCTGGCTCCCCATCCCAACACCTTTAGTTTTAAGATCCAGGGATGTTGTGTTGTTACTGTTTAATTTTGT 3386
Query 823 -------------------------------------------------------------------------- 822
Sbjct 3387 GATCCTAGGGACCACACCGAGGGCCTTTATATACTAGGTATCTACTTAGTCACATTCCCAGTGAACGTTCATCC 3460
Query 823 -------------------------------------------------------------------------- 822
Sbjct 3461 AGGTTCCTTCTCCCCGAGACATCTCTTTAAATGCCAAAGCTGGAATATTAAACTTACCCAGGCAGACCTTGCTT 3534
Query 823 -------------------------------------------------------------------------- 822
Sbjct 3535 GTGATCTTCCTGCTTTGATCTTCCAAATGGCTGAGATTATAGGCCTGTACCACAAGGCCTATGCTAAGATTGGG 3608
Query 823 -------------------------------------------------------------------------- 822
Sbjct 3609 TTTTGATGAACAAATGAAAGGATTGAGGGCCATGGCATTAAATTTAGCATTTAGAGTTATAGATGTATCTCGAG 3682
Query 823 -------------------------------------------------------------------------- 822
Sbjct 3683 AATATTCTCCTCTTGTAAGGAAAATCATCCAGGCCTTTTATGTAACTTCTGGTCTTTTTTCATTTTCCTCAATT 3756
Query 823 -------------------------------------------------------------------------- 822
Sbjct 3757 CTCAAAAGTTCCATTTTTGTTGTGATCTTTTTTAGGGTTTTTAAAATGTTTATGTGTATGAGTAATTTTACCTG 3830
Query 823 -------------------------------------------------------------------------- 822
Sbjct 3831 CAAGTATGTACTCTCCAGCCCCTTTGTTCTGACATTTAAGGAAAAGTGTGCTTTAATCTAGATTATTATTTTCC 3904
Query 823 - 822
Sbjct 3905 A 3905
