Nucleotide Global Alignment

Description

Query:
TRCN0000488438
Subject:
XR_001783189.1
Aligned Length:
3277
Identities:
1168
Gaps:
1967

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CCACCCCCCGAAATTGGCACTCAGCAGGTTGGGTAGAGACAGAGACCTGTCCGGTGTGGTCCAGGCTAAAGGGC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CTCACCCTGTACTTAGTTTAGGGCCAGCTTATGAGGGGAACAGGAAGAAGCACAGGCCTTAGTTCCCAGAGTGG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GAGAAAGGGGTGGCCCTGGGACAGAGGGAGAGCAAGGGATTGGCAGTGACTGTGGGCAGGGCCGGTCCGGACAA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AGGCGGAGTCAACTTGTACACGTGAAAAACTCTGGCTGGGGCCCGGCTTTTGCCTTCCTCCTCCTCTTACCCAC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CTTCCTGCACCCCTCCCTTCTCCCTTCTCCCGCAGCTCAGGTTACAGCTTCTTTGGGGGGAAAACCGCTCACCT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TTCCAGGGCCAGGAAGAGCCAGGGTCCCGAGTAGGGACCCCGGCGGGGCGCGGGGCAGGGCACCTAAGCCTGGC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  AGCGCGGCCGCGGAGGGCGGGAGCCGGCTCGCCACGACCGGGACACGCGCAGAGTCCGCCGCGGCGGCCAGAGA  518

Query    1  -------------------------------------------------------ATGAACAAGATGAAGAACT  19
                                                                   |||||||||||||||||||
Sbjct  519  GGGGCACCGCGCCGGGCAAGCTGAGCAAAGGACCCATCTTGGACCCCTGCTGATCATGAACAAGATGAAGAACT  592

Query   20  TTAAGCGCCGTTTCTCCCTGTCAGTGCCCCGCACTGAGACCATTGAAGAATCCTTGGCTGAATTCACGGAGCAA  93
            |.|||||..|..|.||||||||.|||||||||.|.|||||||||||.||.||.||||||||.|||||.|||||.
Sbjct  593  TCAAGCGAAGGCTTTCCCTGTCCGTGCCCCGCCCAGAGACCATTGAGGAGTCGTTGGCTGAGTTCACTGAGCAG  666

Query   94  TTCAACCAGCTCCACAACCGGCGGAATGAGAACTTGCAGCTCGGTCCTCTTGGCAGAGACCCCCCGCAGGAGTG  167
            ||||||||.|||||||..|.|..|||||||.|                  |||||.|                 
Sbjct  667  TTCAACCAACTCCACACTCAGACGAATGAGGA------------------TGGCACA-----------------  705

Query  168  CAGCACCTTCTCCCCAACAGACAGCGGGGAGGAGCCGGGGCAGCTCTCCCCTGGCGTGCAGTTCCAGCGGCGGC  241
                                        ||.|||||.|.||||||.||.||||||.||||||..||.|..||||
Sbjct  706  ----------------------------GATGAGCCTGAGCAGCTGTCTCCTGGCATGCAGTATCAACAACGGC  751

Query  242  AGAACCAGCGCCGCTTCTCCATGGAGGACGTCAGCAAGAGGCTCTCTCTGCCCATGGATATCCGCCTGCCCCAG  315
            |||||||||||||.|||||||||||||||.|||.||||||||||||||||||||||||.||||||||.||||||
Sbjct  752  AGAACCAGCGCCGATTCTCCATGGAGGACCTCAACAAGAGGCTCTCTCTGCCCATGGACATCCGCCTACCCCAG  825

Query  316  GAATTCCTACAGAAGCTACAGATGGAGAGCCCAGATCTGCCCAAGCCGCTCAGCCGCATGTCCCGCCGGGCCTC  389
            ||||||||.||||||||||||.||||||.|||||..|||||||||||.||||.|||||||||||||||.|||||
Sbjct  826  GAATTCCTGCAGAAGCTACAGCTGGAGAACCCAGGGCTGCCCAAGCCTCTCACCCGCATGTCCCGCCGTGCCTC  899

Query  390  CCTGTCAGACATTGGCTTTGGGAAACTGGAAACATACGTGAAACTGGACAAACTGGGAGAGGGCACCTATGCCA  463
            |||||||||.||.|||||||||||||||||||||||.||||||||||||||||||||.|||||.||||||||||
Sbjct  900  CCTGTCAGATATCGGCTTTGGGAAACTGGAAACATATGTGAAACTGGACAAACTGGGGGAGGGTACCTATGCCA  973

Query  464  CAGTCTTCAAAGGGCGCAGCAAACTGATGGAGAACCTTGTGGCCCTGAAAGAGATCCGGCTGGAGCACGAGGAG  537
            |.||||||||.||.||||||||.||||..||||||||.|||||||||||.|||||||||||||||||.|||||.
Sbjct  974  CCGTCTTCAAGGGACGCAGCAAGCTGACAGAGAACCTCGTGGCCCTGAAGGAGATCCGGCTGGAGCATGAGGAA  1047

Query  538  GGAGCGCCCTGCACTGCCATCCGAGAGGTGTCTCTGCTGAAGAACCTGAAGCACGCCAATATTGTGACCCTGCA  611
            ||.||||||||||||||.||.|||||||||||||||||||||.|||||||.|||||||||||||||||||||||
Sbjct 1048  GGGGCGCCCTGCACTGCTATTCGAGAGGTGTCTCTGCTGAAGGACCTGAAACACGCCAATATTGTGACCCTGCA  1121

Query  612  TGACCTCATCCACACAGATCGGTCCCTCACCCTGGTGTTTGAGTACCTGGACAGTGACCTGAAGCAGTATCTGG  685
            |||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||.||.|
Sbjct 1122  TGACCTCATTCACACAGATCGGTCCCTCACCCTGGTGTTTGAGTACCTGGACAGTGACCTGAAACAGTACCTAG  1195

Query  686  ACCACTGTGGGAACCTCATGAGCATGCACAACGTCAAGATTTTCATGTTCCAGCTGCTCCGGGGCCTCGCCTAC  759
            |||||||||||||||||||||.|||||||||.||||||||.|||||||||||||||||||||||.||.||||||
Sbjct 1196  ACCACTGTGGGAACCTCATGAACATGCACAATGTCAAGATATTCATGTTCCAGCTGCTCCGGGGTCTGGCCTAC  1269

Query  760  TGTCACCACCGCAAGATCCTGCACCGGGACCTGAAGCCCCAGAACCTGCTCATCAACGAGAGGGGGGAGCTGAA  833
            ||.||||||||||||||||||||||||||||||||||||||||||||.||||||||.||||||||.||||||||
Sbjct 1270  TGCCACCACCGCAAGATCCTGCACCGGGACCTGAAGCCCCAGAACCTACTCATCAATGAGAGGGGCGAGCTGAA  1343

Query  834  GCTGGCCGACTTTGGACTGGCCAGGGCCAAGTCAGTGCCCACAAAGACTTACTCCAATGAGGTGGTGACCCTGT  907
            |||||||||||||||.||||||.|||||||.||||||||.||||||||.||.||||||||||||||||||||.|
Sbjct 1344  GCTGGCCGACTTTGGCCTGGCCCGGGCCAAATCAGTGCCTACAAAGACCTATTCCAATGAGGTGGTGACCCTCT  1417

Query  908  GGTACAGGCCCCCCGATGTGCTGCTGGGATCCACAGAGTACTCCACCCCCATTGATATGTGGGGCGTGGGCTGC  981
            |||||||||||||.|||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||
Sbjct 1418  GGTACAGGCCCCCAGATGTGCTGCTGGGATCCACAGAGTACTCCACCCCCATTGACATGTGGGGCGTGGGCTGC  1491

Query  982  ATCCACTACGAGATGGCCACAGGGAGGCCCCTCTTCCCGGGCTCCACAGTCAAGGAGGAGCTGCACCTCATCTT  1055
            ||||.|||.|||||||||||.||.|.||||||||||||||||||.||.||||||||||||.|||||||||||||
Sbjct 1492  ATCCTCTATGAGATGGCCACCGGCAAGCCCCTCTTCCCGGGCTCTACTGTCAAGGAGGAGTTGCACCTCATCTT  1565

Query 1056  TCGCCTCCTCGGGACCCCCACAGAAGAGACGTGGCCCGGCGTGACCGCCTTCTCTGAGTTCCGCACCTACAGCT  1129
            .||.|||||.|||||.||.|||||||||.|||||||.||.|||||..||.||||||||||.||..||||||.||
Sbjct 1566  CCGTCTCCTAGGGACACCTACAGAAGAGTCGTGGCCGGGTGTGACGTCCATCTCTGAGTTTCGAGCCTACAACT  1639

Query 1130  TCCCCTGCTACCTCCCGCAGCCGCTCATCAACCACGCGCCCAGGTTGGATACGGATGGCATCCACCTCCTGAGC  1203
            |||||.|.|||||.||.|||||.||..|||.||||||.||||                                
Sbjct 1640  TCCCCCGATACCTACCACAGCCACTGCTCAGCCACGCCCCCA--------------------------------  1681

Query 1204  AGCCTGCTCCTGTATGAATCCAAGAGTCGCATGTCAGCAGAGGCTGCCCTGAGTCACTCCTACTTCCGGTCTCT  1277
                       |||||||||||||||||||||||||||||||||.|||||.|.||||.|||||||||.||||||
Sbjct 1682  -----------GTATGAATCCAAGAGTCGCATGTCAGCAGAGGCAGCCCTCAATCACCCCTACTTCCAGTCTCT  1744

Query 1278  GGGAGAGCGTGTGCACCAGCTTGAAGACACTGCCTCCATCTTCTCCCTGAAGGAGATCCAGCTCCAGAAGGACC  1351
            .|||||.||.||.||.|||||..|.|||||||||||||||||||||||||||||||||||||||||.|||||||
Sbjct 1745  CGGAGACCGAGTTCATCAGCTCCATGACACTGCCTCCATCTTCTCCCTGAAGGAGATCCAGCTCCAAAAGGACC  1818

Query 1352  CAGGCTACCGAGGCTTGGCCTTCCAGCAGCCAGGACGAGGGAAGAACAGGCGGCAGAGCATCTTC---------  1416
            |||||||.||.|||.|||||||||||||.|||||.||||||||||.|.|||||||||||||||||         
Sbjct 1819  CAGGCTATCGTGGCCTGGCCTTCCAGCACCCAGGGCGAGGGAAGAGCCGGCGGCAGAGCATCTTCTGAACCATG  1892

Query 1417  --------------------------------------------------------------------------  1416
                                                                                      
Sbjct 1893  CCCACCCTGCTGCACCTTGAGGGATGAGAGGCCACACGGAACATGAACTCAGGAAGTATATGGGGCCTGTGTGG  1966

Query 1417  --------------------------------------------------------------------------  1416
                                                                                      
Sbjct 1967  CCATCAGAGGGCTGAACAATGAATGCCTGTGGCCAGCCTGGAGGGCCACTCGGCAGCCCTGTTGGTAGCATTTG  2040

Query 1417  --------------------------------------------------------------------------  1416
                                                                                      
Sbjct 2041  CTTCCTTCCCTTGCTTGCCACACAGCTCTGTGGTGGCCTCTACCCGGATACCATTCCCCTTGTCACCCACTGTG  2114

Query 1417  --------------------------------------------------------------------------  1416
                                                                                      
Sbjct 2115  GGATGGGGCGTGAGGTCACTTCCCGAGGGGAAGTGAGGTCACGGAGGTCCTTGGGACCCTTTCCCAATGGAAGT  2188

Query 1417  --------------------------------------------------------------------------  1416
                                                                                      
Sbjct 2189  GCAGGAGAATGTGGGGGCCCTGGCCCTGCCGACTCATCGGCTTGACAAACCCCCTTCTTATTCCTTGGACCCTG  2262

Query 1417  --------------------------------------------------------------------------  1416
                                                                                      
Sbjct 2263  ACTTCATCTTCTTCCCCTCTGAGAACGAGGAATATGGCACCTGACCTGGGACCCTGGAATTGTTCCCATGGGTG  2336

Query 1417  --------------------------------------------------------------------------  1416
                                                                                      
Sbjct 2337  TGCTGACCCCACCCAAAGGCAGACATTCCTGGAACATCAGAAAAAAGTAGTACCTCCTCTTGTCACCTCCCCCA  2410

Query 1417  --------------------------------------------------------------------------  1416
                                                                                      
Sbjct 2411  CCATGCTATTGTCCCCTCCTTGCCAGAAGCCCTGTACCCTCTGGCTTGACCCAAGGCTAAAAAGCACCAGCATG  2484

Query 1417  --------------------------------------------------------------------------  1416
                                                                                      
Sbjct 2485  CTGCCCATGTCCAGCTGCATCCGGAAGTGTTCTGGTACTCCAAGATGTACTCCTACAGCCTCAGCCAGCCCCTG  2558

Query 1417  --------------------------------------------------------------------------  1416
                                                                                      
Sbjct 2559  CCCGTCCCCCCAGTCTGGAAAGGGTTGCCTTAAACTGGCAGGTGGTAGAGTGCACTCTGTCCTTGGAACTCTGA  2632

Query 1417  --------------------------------------------------------------------------  1416
                                                                                      
Sbjct 2633  CCTAGCACCTATGTCCTTCTTCCCTAAGCCACTCCTATGAGTGTTATCATTCCTGAGGGCTGATAAGACAACCC  2706

Query 1417  --------------------------------------------------------------------------  1416
                                                                                      
Sbjct 2707  TGTCTCAGGGTCCTGAGGCTGGCACCCAGATAGGCAAGGTCACCTTGACACTGGTACCATGGTAACCTTGGCTC  2780

Query 1417  --------------------------------------------------------------------------  1416
                                                                                      
Sbjct 2781  TTTAGGGCTGGTGCAGCCTCCTCTCCACACCCCACCACTTTCCCAGCCCTGTCTACCTGACCCTGGCACTGGCC  2854

Query 1417  --------------------------------------------------------------------------  1416
                                                                                      
Sbjct 2855  TCCACAGAAAGGGTGGGAAGGGAGTCCGCACTGCAGCCTAAGCTGGAGAGAGGTGAGATTGCAGCAGGTTTGAT  2928

Query 1417  --------------------------------------------------------------------------  1416
                                                                                      
Sbjct 2929  CCTGAGAGCCTCATCCTACATCCCTAGAGAAGGCACCCTTCCTCTGTACTCCTCTCATGGTGTAGGGTCTCTCC  3002

Query 1417  --------------------------------------------------------------------------  1416
                                                                                      
Sbjct 3003  AACATTTGGCTGAACTTGAAGGGCAAAGACCAAGGGGAGGTCAAGCCCCAATGCCTGTCCTAACCCCTGGGAGC  3076

Query 1417  --------------------------------------------------------------------------  1416
                                                                                      
Sbjct 3077  CTGGGTTCTCCCTAACCCCCTTTCCCACTGACTGTGAATGTCGTGACTCAGAGCAAAGACAGAGAATATATTTA  3150

Query 1417  ---------------------  1416
                                 
Sbjct 3151  ATTCATGTTGTACAAAAAGCA  3171

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.