Construct: ORF TRCN0000488438

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF020224.1_s317c1
DNA Barcode:
TGGGCAGAAAGGATGCTTCTAAAC
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Has stop codon in insert

Originally Annotated References:

Gene:
CDK18 (5129)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000488438
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5129 CDK18 cyclin dependent kinase 18 NM_002596.4 99.5% 99.3% 1_6delATGATC;497C>T
2 human 5129 CDK18 cyclin dependent kinase 18 NM_212502.3 99.5% 99.3% 1_6delATGATC;497C>T
3 human 5129 CDK18 cyclin dependent kinase 18 NM_212503.3 93.5% 93.4% 1_6delATGATC;274_363del;587C>T
4 human 5129 CDK18 cyclin dependent kinase 18 XM_011509602.3 87% 86.9% 1_210del;701C>T
5 human 5129 CDK18 cyclin dependent kinase 18 XM_017001423.2 82.4% 82.3% 1_210del;478_567del;791C>T
6 human 5129 CDK18 cyclin dependent kinase 18 XR_002956776.1 38.6% (many diffs)
7 human 5129 CDK18 cyclin dependent kinase 18 XR_426781.4 38.1% (many diffs)
8 human 5129 CDK18 cyclin dependent kinase 18 XR_426784.3 37.9% (many diffs)
9 human 5129 CDK18 cyclin dependent kinase 18 XR_426782.4 37.6% (many diffs)
10 human 5129 CDK18 cyclin dependent kinase 18 XR_001737213.1 36.8% (many diffs)
11 human 5129 CDK18 cyclin dependent kinase 18 XR_426780.4 36.7% (many diffs)
12 human 5129 CDK18 cyclin dependent kinase 18 XR_426779.3 35.9% (many diffs)
13 human 5129 CDK18 cyclin dependent kinase 18 XR_921822.3 35.8% (many diffs)
14 human 5129 CDK18 cyclin dependent kinase 18 XR_001737212.2 35% (many diffs)
15 mouse 18557 Cdk18 cyclin-dependent kinase 18 NM_008795.2 85.2% 87% (many diffs)
16 mouse 18557 Cdk18 cyclin-dependent kinase 18 XM_011247940.2 71.5% 73.7% (many diffs)
17 mouse 18557 Cdk18 cyclin-dependent kinase 18 XR_001783189.1 35.6% (many diffs)
18 mouse 18557 Cdk18 cyclin-dependent kinase 18 XR_387152.3 33.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
72
ORF end:
1488
ORF length:
1416
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61caggcttcac catgaacaag atgaagaact ttaagcgccg tttctccctg tcagtgcccc
121gcactgagac cattgaagaa tccttggctg aattcacgga gcaattcaac cagctccaca
181accggcggaa tgagaacttg cagctcggtc ctcttggcag agaccccccg caggagtgca
241gcaccttctc cccaacagac agcggggagg agccggggca gctctcccct ggcgtgcagt
301tccagcggcg gcagaaccag cgccgcttct ccatggagga cgtcagcaag aggctctctc
361tgcccatgga tatccgcctg ccccaggaat tcctacagaa gctacagatg gagagcccag
421atctgcccaa gccgctcagc cgcatgtccc gccgggcctc cctgtcagac attggctttg
481ggaaactgga aacatacgtg aaactggaca aactgggaga gggcacctat gccacagtct
541tcaaagggcg cagcaaactg atggagaacc ttgtggccct gaaagagatc cggctggagc
601acgaggaggg agcgccctgc actgccatcc gagaggtgtc tctgctgaag aacctgaagc
661acgccaatat tgtgaccctg catgacctca tccacacaga tcggtccctc accctggtgt
721ttgagtacct ggacagtgac ctgaagcagt atctggacca ctgtgggaac ctcatgagca
781tgcacaacgt caagattttc atgttccagc tgctccgggg cctcgcctac tgtcaccacc
841gcaagatcct gcaccgggac ctgaagcccc agaacctgct catcaacgag aggggggagc
901tgaagctggc cgactttgga ctggccaggg ccaagtcagt gcccacaaag acttactcca
961atgaggtggt gaccctgtgg tacaggcccc ccgatgtgct gctgggatcc acagagtact
1021ccacccccat tgatatgtgg ggcgtgggct gcatccacta cgagatggcc acagggaggc
1081ccctcttccc gggctccaca gtcaaggagg agctgcacct catctttcgc ctcctcggga
1141cccccacaga agagacgtgg cccggcgtga ccgccTTCTC TGAGTTCCGC ACCTACAGCT
1201TCCCCTGCTA CCTCCCGCAG CCGCTCATCA ACCACGCGCC CAGGTTGGAT ACGGATGGCA
1261TCCACCTCCT GAGCAGCCTG CTCCTGTATG AATCCAAGAG TCGCATGTCA GCAGAGGCTG
1321CCCTGAGTCA CTCCTACTTC CGGTCTCTGG GAGAGCGTGT GCACCAGCTT GAAGACACTG
1381CCTCCATCTT CTCCCTGAAG GAGATCCAGC TCCAGAAGGA CCCAGGCTAC CGAGGCTTGG
1441CCTTCCAGCA GCCAGGACGA GGGAAGAACA GGCGGCAGAG CATCTTCTGA GACCCAGCTT
1501TCTTGTACAA AGTGGTTGAT ATCGGTAAGC CTATCCCTAA CCCTCTCCTC GGTCTCGATT
1561CTACGTAGTA ATGAACTAGT CCGTAACTTG AAAGTATTTC GATTTCTTGG CTTTATATAT
1621CTTGTGGAAA GGACGATGGG CAGAAAGGAT GCTTCTAAAC ACGCGTTAAG TCgacaatca
1681acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)

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