Nucleotide Global Alignment

Description

• Query: TRCN0000488486
• Subject: XM_006514469.2
• Aligned Length: 1958
• Identities: 1420
• Gaps: 409

Alignment

Query    1  ATGGCCACCACGGTGACCTGCACCCGCTTCACCGACGAGTACCAGCTCTACGAGGATATTGGCAAGGGGGCTTT  74
            ||||||||||||||||||||||||||.||||||||||||||||||||.||||||||||||||||||||||||||
Sbjct    1  ATGGCCACCACGGTGACCTGCACCCGTTTCACCGACGAGTACCAGCTATACGAGGATATTGGCAAGGGGGCTTT  74

Query   75  CTCTGTGGTCCGACGCTGTGTCAAGCTCTGCACCGGCCATGAGTATGCAGCCAAGATCATCAACACCAAGAAGC  148
            ||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||.||.||||||||||
Sbjct   75  CTCTGTGGTCCGACGCTGTGTCAAGCTCTGTACCGGCCATGAGTATGCAGCCAAGATCATTAATACCAAGAAGC  148

Query  149  TGTCAGCCAGAGATCACCAGAAGCTGGAGAGAGAGGCTCGGATCTGCCGCCTTCTGAAGCATTCCAACATCGTG  222
            ||||.|||||||||||||||||.|||||||||||.|||||||||||||||||.|||||||||||||||||.||.
Sbjct  149  TGTCGGCCAGAGATCACCAGAAACTGGAGAGAGAAGCTCGGATCTGCCGCCTGCTGAAGCATTCCAACATTGTA  222

Query  223  CGTCTCCACGACAGCATCTCCGAGGAGGGCTTCCACTACCTGGTCTTCGATCTGGTCACTGGTGGGGAGCTCTT  296
            ||.|||||.|||||||||||.||.||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  CGCCTCCATGACAGCATCTCTGAAGAGGGCTTCCACTACCTGGTCTTCGATCTGGTCACTGGTGGGGAGCTCTT  296

Query  297  TGAAGACATTGTGGCGAGAGAGTACTACAGCGAGGCTGATGCCAGTCACTGTATCCAGCAGATCCTGGAGGCCG  370
            |||||||||.|||||.||||||||||||||.||.|||||||||||||||||.|||||||||||||||||.||.|
Sbjct  297  TGAAGACATCGTGGCAAGAGAGTACTACAGTGAAGCTGATGCCAGTCACTGCATCCAGCAGATCCTGGAAGCTG  370

Query  371  TTCTCCATTGTCACCAAATGGGGGTCGTCCACAGAGACCTCAAGCCGGAGAACCTGCTTCTGGCCAGCAAGTGC  444
            ||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||.|||
Sbjct  371  TTCTCCATTGTCACCAAATGGGGGTCGTCCACAGAGACCTCAAGCCTGAGAACCTGCTTCTGGCCAGCAAATGC  444

Query  445  AAAGGGGCTGCAGTGAAGCTGGCAGACTTCGGCCTAGCTATCGAGGTGCAGGGGGACCAGCAGGCATGGTTTGG  518
            |||||.||.||||||||||||||||||||||||||.||.||||||||.|||||.||||||||||||||||||||
Sbjct  445  AAAGGCGCCGCAGTGAAGCTGGCAGACTTCGGCCTGGCCATCGAGGTTCAGGGAGACCAGCAGGCATGGTTTGG  518

Query  519  TTTCGCTGGCACACCAGGCTACCTGTCCCCTGAGGTCCTTCGCAAAGAGGCGTATGGCAAGCCTGTGGACATCT  592
            .||.||.||.||.||||||||||||||.||.|||||||||||.||.|||||.||.|||||.|||||||||||||
Sbjct  519  ATTTGCGGGAACGCCAGGCTACCTGTCTCCCGAGGTCCTTCGGAAGGAGGCCTACGGCAAACCTGTGGACATCT  592

Query  593  GGGCATGTGGGGTGATCCTGTACATCCTGCTCGTGGGCTACCCACCCTTCTGGGACGAGGACCAGCACAAGCTG  666
            ||||||||||||||||||||||.||||||||.||||||||||||||.||||||||.||||||||.|||||||||
Sbjct  593  GGGCATGTGGGGTGATCCTGTATATCCTGCTGGTGGGCTACCCACCTTTCTGGGATGAGGACCAACACAAGCTG  666

Query  667  TACCAGCAGATCAAGGCTGGTGCCTATGACTTCCCGTCCCCTGAGTGGGACACCGTCACTCCTGAAGCCAAAAA  740
            ||||||||||||||||||||.||.|||||.|||||.||||||||||||||||||||.|||||||||||||||||
Sbjct  667  TACCAGCAGATCAAGGCTGGGGCGTATGATTTCCCATCCCCTGAGTGGGACACCGTTACTCCTGAAGCCAAAAA  740

Query  741  CCTCATCAACCAGATGCTGACCATCAACCCTGCCAAGCGCATCACAGCCCATGAGGCCCTGAAGCACCCGTGGG  814
            |||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||.||||
Sbjct  741  CCTCATCAACCAGATGCTGACCATCAACCCTGCCAAGCGCATCACGGCCCATGAGGCCCTGAAGCACCCATGGG  814

Query  815  TCTGCCAACGCTCCACGGTAGCATCCATGATGCACAGACAGGAGACTGTGGAGTGTCTGAAAAAGTTCAATGCC  888
            ||||||||||.|||||.||.||.||.||||||||||||||||||||||||||.||||||||.|||||||||||.
Sbjct  815  TCTGCCAACGTTCCACCGTGGCCTCTATGATGCACAGACAGGAGACTGTGGAATGTCTGAAGAAGTTCAATGCA  888

Query  889  AGGAGAAAGCTCAAGGGAGCCATCCTCACCACCATGCTGGCCACACGGAATTTCTCAGTGGGCAGACAGACCAC  962
            |||||.||||||||||||||||||||||||||.|||||||||||||||||||||||||                
Sbjct  889  AGGAGGAAGCTCAAGGGAGCCATCCTCACCACTATGCTGGCCACACGGAATTTCTCAG----------------  946

Query  963  CGCTCCGGCCACAATGTCCACCGCGGCCTCCGGCACCACCATGGGGCTGGTGGAACAAGCCAAGAGTTTACTCA  1036
                                                                    .|||||||||||||||||
Sbjct  947  --------------------------------------------------------CAGCCAAGAGTTTACTCA  964

Query 1037  ACAAGAAAGCAGATGGAGTCAAGCCCCAGACGAATAGCACCAAAAACAGTGCAGCCGCCACCAGCCCCAAAGGG  1110
            |||||||||||||||||||||||||||||||.||.||||||||||||||..|.|||..|||||||||||||||.
Sbjct  965  ACAAGAAAGCAGATGGAGTCAAGCCCCAGACAAACAGCACCAAAAACAGCTCGGCCATCACCAGCCCCAAAGGA  1038

Query 1111  ACGCTTCCTCCTGCCGCCCTGGA---------------------------------------------------  1133
            .|.||.||||||||.||||||||                                                   
Sbjct 1039  TCTCTCCCTCCTGCTGCCCTGGAATCTTCCGACAGCACCAACACAACCATAGAGGATGAAGATGCCAAAGCCCC  1112

Query 1134  ----------------------------------GCCTCA----------------------------------  1139
                                              ||||||                                  
Sbjct 1113  CAGGGTCCCTGATGTCCTGAGCTTGGTGAGGAGGGCCTCAGGAGCCCCCGAAGCCGAGGGCCCCCTCTCCTGCC  1186

Query 1140  ----------------------------AACCACCGT----------------CATCCATAACCCAGTG-GACG  1168
                                        |||| ||||                |||||..|||.||||| ||.|
Sbjct 1187  AATCTCCAGTTCCCATTAGCCCCCTTCCAACC-CCGTCCCCCAGGATCTCTGACATCCTGAACTCAGTGAGAAG  1259

Query 1169  GGATTAAGGA----------------GTCTTCTGACAGTG----CCAATACCAC-------------------C  1203
            ||..|..|||                |.|..||..|||||    ||    ||||                   |
Sbjct 1260  GGGCTGTGGAACCCCAGAAGCCGAGGGACCCCTATCAGTGGGGCCC----CCACCCTGCTTGTCTCCGGGTCTC  1329

Query 1204  ATAG-----------------------AGGA----TGA------------------------------------  1214
            .|||                       ||||    |||                                    
Sbjct 1330  CTAGGCCCCCTGCCCACCCCGTCCCCCAGGATCTCTGACATCCTCAACTCAGTGAGGCGGGGCTCAGGGACCCC  1403

Query 1215  AGACGCTAA-----------------------------------------------------------------  1223
            |||.|||.|                                                                 
Sbjct 1404  AGAAGCTGAGGGCCTCCCACCAGTGGGCCCCCCACCCTGCCCATCTCCGACTCTCCCTGGCCCCTTGCCCACCC  1477

Query 1224  -AGCCCGGAAGCAGGAGATCATTAAGACCACGGAGCAGCTCATCGAGGCCGTCAACAACGGTGACTTTGAGGCC  1296
             |.|||||||||||||.|||||.||||||||.|||||||||||.||||||||||||||.||.||||||||||||
Sbjct 1478  CATCCCGGAAGCAGGAAATCATCAAGACCACAGAGCAGCTCATTGAGGCCGTCAACAATGGGGACTTTGAGGCC  1551

Query 1297  TACGCGAAAATCTGTGACCCAGGGCTGACCTCGTTTGAGCCTGAAGCACTGGGCAACCTGGTTGAAGGGATGGA  1370
            ||.||||||||||||||||||||.||||||||.||||||||||||||.||||||||||||||.|||||||||||
Sbjct 1552  TATGCGAAAATCTGTGACCCAGGCCTGACCTCATTTGAGCCTGAAGCTCTGGGCAACCTGGTCGAAGGGATGGA  1625

Query 1371  CTTCCACAGATTCTACTTCGAGAACCTGCTGGCCAAGAACAGCAAGCCGATCCACACGACCATCCTGAACCCAC  1444
            .|||||||||||||||||.||||||||||||||||||||||||||||||||||||||.||||||||||||||.|
Sbjct 1626  TTTCCACAGATTCTACTTTGAGAACCTGCTGGCCAAGAACAGCAAGCCGATCCACACCACCATCCTGAACCCGC  1699

Query 1445  ACGTGCACGTCATTGGAGAGGATGCCGCCTGCATCGCTTACATCCGGCTCACGCAGTACATTGACGGGCAGGGC  1518
            ||||||||||||||||.||||||||.||.||||||||.||||||||.|||||.||||||||.||.||.||||||
Sbjct 1700  ACGTGCACGTCATTGGCGAGGATGCGGCATGCATCGCCTACATCCGCCTCACACAGTACATCGATGGCCAGGGC  1773

Query 1519  CGGCCCCGCACCAGCCAGTCTGAGGAGACCCGCGTGTGGCACCGCCGCGACGGCAAGTGGCAGAACGTGCACTT  1592
            .|.|||||.|||||||||||.||.||||||||.||||||||||||||||||||||||||||||||.||.||.||
Sbjct 1774  AGACCCCGTACCAGCCAGTCCGAAGAGACCCGTGTGTGGCACCGCCGCGACGGCAAGTGGCAGAATGTACATTT  1847

Query 1593  CCACTGCTCGGGCGCGCCTGTGGCCCCGCTGCAG  1626
            |||||||||||||||.||.|||||||||||||||
Sbjct 1848  CCACTGCTCGGGCGCTCCAGTGGCCCCGCTGCAG  1881