Nucleotide Global Alignment

Description

• Query: TRCN0000488486
• Subject: XM_006518490.3
• Aligned Length: 1792
• Identities: 1255
• Gaps: 257

Alignment

Query    1  ATGGCCACCACGGTGACCTGCACCCGCTTCACCGACGAGTACCAGCTCTACGAGGATATTGGCAAGGGGGCTTT  74
            |||||||||||.|..|||||||||||||||||||||||.||||||||.|.||||||..|.||||||||.||.||
Sbjct    1  ATGGCCACCACCGCCACCTGCACCCGCTTCACCGACGACTACCAGCTTTTCGAGGAGCTCGGCAAGGGTGCCTT  74

Query   75  CTCTGTGGTCCGACGCTGTGTCAAG-----CTCTGCACCGGCCATGAGTATGCAGCCAAGATCATCAACACCAA  143
            |||.||||||||..|.|||||.|||     .|||.|     .||.||.|||||.||.||.||||||||.|||||
Sbjct   75  CTCAGTGGTCCGGAGGTGTGTAAAGAAAACATCTAC-----GCAGGAATATGCTGCAAAAATCATCAATACCAA  143

Query  144  GAAGCTGTCAGCCAGAGATCACCAGAAGCTGGAGAGAGAGGCTCGGATCTGCCGCCTTCTGAAGCATTCCAACA  217
            ||||.||||.|||.|||||||.|||||.||.||..|||||||.|||||.|||||.||||||||.|||.|.||||
Sbjct  144  GAAGTTGTCCGCCCGAGATCATCAGAAACTAGAACGAGAGGCCCGGATATGCCGACTTCTGAAACATCCAAACA  217

Query  218  TCGTGCGTCTCCACGACAGCATCTCCGAGGAGGGCTTCCACTACCTGGTCTTCGATCTGGTCACTGGTGGGGAG  291
            |.|||||||||||.|||||.||.||.||.||.||.||.||||||||.||.||.||.||.||.||.||.||||||
Sbjct  218  TTGTGCGTCTCCATGACAGTATTTCTGAAGAAGGGTTTCACTACCTCGTGTTTGACCTTGTTACCGGAGGGGAG  291

Query  292  CTCTTTGAAGACATTGTGGCGAGAGAGTACTACAGCGAGGCTGATGCCAGTCACTGTATCCAGCAGATCCTGGA  365
            .|.|||||||||||||||||.||||||||||||||.||.|||||||||||.||||||||.||.|||||||||||
Sbjct  292  TTGTTTGAAGACATTGTGGCCAGAGAGTACTACAGTGAAGCTGATGCCAGCCACTGTATACATCAGATCCTGGA  365

Query  366  GGCCGTTCTCCATTGTCACCA-AATGGGGGTCGTCCACAGAGACCTCAAGCCGGAGAACCTGCTTCTGGCCAGC  438
            |...|||..|||....||||| .|| |...||||||||.|.||.||.|||||.||||||.||||.|||||.||.
Sbjct  366  GAGTGTTAACCACATCCACCAGCAT-GACATCGTCCACCGGGATCTGAAGCCTGAGAACTTGCTGCTGGCGAGT  438

Query  439  AAGTGCAAAGGGGCTGCAGTGAAGCTGGCAGACTTCGGCCTAGCTATCGAGGTGCAGGGGGACCAGCAGGCATG  512
            ||.|||||.||.|||||.||.|||||.||.||.||.|||||.||.|||||.||.|||||.||.||||||||.||
Sbjct  439  AAATGCAAGGGTGCTGCGGTCAAGCTAGCTGATTTTGGCCTGGCCATCGAAGTACAGGGAGAGCAGCAGGCTTG  512

Query  513  GTTTGGTTTCGCTGGCACACCAGGCTACCTGTCCCCTGAGGTCCTTCGCAAAGAGGCGTATGGCAAGCCTGTGG  586
            |||||||||.||.|||||.|||||.|||.||||||||||||||.|..|.|||||..|.|||||.||.|||||||
Sbjct  513  GTTTGGTTTTGCCGGCACCCCAGGTTACTTGTCCCCTGAGGTCTTGAGGAAAGATCCCTATGGAAAACCTGTGG  586

Query  587  ACATCTGGGCATGTGGGGTGATCCTGTACATCCTGCTCGTGGGCTACCCACCCTTCTGGGACGAGGACCAGCAC  660
            ||||||||||.||.|||||.||||||||.|||||.||.|||||||||||.|||||||||||.|||||.||||||
Sbjct  587  ACATCTGGGCCTGCGGGGTCATCCTGTATATCCTCCTGGTGGGCTACCCTCCCTTCTGGGATGAGGATCAGCAC  660

Query  661  AAGCTGTACCAGCAGATCAAGGCTGGTGCCTATGACTTCCCGTCCCCTGAGTGGGACACCGTCACTCCTGAAGC  734
            ||||||||.|||||||||||.|||||.|||||.||.|||||.||.||.||.||||||||.||||||||||||||
Sbjct  661  AAGCTGTATCAGCAGATCAAAGCTGGAGCCTACGATTTCCCATCACCAGAATGGGACACAGTCACTCCTGAAGC  734

Query  735  CAAAAACCTCATCAACCAGATGCTGACCATCAACCCTGCCAAGCGCATCACAGCCCATGAGGCCCTGAAGCACC  808
            .||.|||.|.||||||||||||||||||||.||||||||.|||||||||||.|||.|..||||.||.|||||||
Sbjct  735  TAAGAACTTGATCAACCAGATGCTGACCATAAACCCTGCAAAGCGCATCACGGCCGACCAGGCTCTCAAGCACC  808

Query  809  CGTGGGTCTGCCAACGCTCCACGGTAGCATCCATGATGCACAGACAGGAGACTGTGGAGTGTCT---GAAAAAG  879
            |.||||||||.|||||.||.|||||.||||||||||||||..|.||.|||||.||.||||| ||   |.|||  
Sbjct  809  CATGGGTCTGTCAACGGTCTACGGTGGCATCCATGATGCATCGCCAAGAGACGGTAGAGTG-CTTACGCAAA--  879

Query  880  TTCAATGCCAGGAGAAAGCTCAAGGGAGCCATCCTCACCACCATGCTGGCCACACGGAATTTCTCAGTGGGCAG  953
            |||||.|||.|||||||.||.|||||.|||||||||||.||||||||.|.|.|..||||.||.||||       
Sbjct  880  TTCAACGCCCGGAGAAAACTGAAGGGTGCCATCCTCACAACCATGCTTGTCTCCAGGAACTTTTCAG-------  946

Query  954  ACAGACCACCGCTCCGGCCACAATGTCCACCGCGGCCTCCGGCACCACCATGGGGCTGGTGGAACAAGCCAAGA  1027
                          |.||||.||           ||||                    .|.|||||||  ||| 
Sbjct  947  --------------CTGCCAAAA-----------GCCT--------------------ATTGAACAAG--AAG-  972

Query 1028  GTTTACTCA----------ACAAGAAAGCAGATGGAGTCAAGCCCCAGACG-------AAT----------AGC  1074
                  |||          .|||||||    |.|.||||.||..|||| ||       |||          |.|
Sbjct  973  ------TCAGATGGCGGTGTCAAGAAA----AGGAAGTCGAGTTCCAG-CGTGCACCTAATGCCACAGAGCAAC  1035

Query 1075  ACCAAAAACAGTGC-----AGCCGCCACCAGCCCCAAAGGGAC-GCTTCCTCCTG----CCGCCCTGGAGCCTC  1138
            |.|||||||||| |     |||     |||||||  |||.|.| ||..|||  ||    |.|||.||||.||.|
Sbjct 1036  AACAAAAACAGT-CTCGTAAGC-----CCAGCCC--AAGAGCCTGCGCCCT--TGCAGACGGCCATGGAACCAC  1099

Query 1139  AAACCACCGTCATCCATAACCCAGTG-----GACGGGATTAAGGAGTCTTCTGACAG-TGCCAATACCACCATA  1206
            ||||||||||..|.|||||     ||     ||.|||||.||||..||..|.||.|| || .||.|||||.|.|
Sbjct 1100  AAACCACCGTGGTACATAA-----TGCTACAGATGGGATCAAGGGCTCCACAGAGAGCTG-TAACACCACTACA  1167

Query 1207  GAGGATGAAGA-------------------CG-----------------------CTAAAG---------CCCG  1229
            ||.||.|||||                   ||                       ||.|||         ||||
Sbjct 1168  GAAGACGAAGATCTCAAAGCTGCCCCACTCCGCACTGGGAATGGCAGCTTGGTGCCTGAAGGACGGAGCCCCCG  1241

Query 1230  G---------------------------------------------------------------AAGCAGGAGA  1240
            |                                                               ||.||.||.|
Sbjct 1242  GGACAGAACAGCCCCCTCTGCAGGCATGCAGCCCCAGCCTTCTCTCTGCTCCTCAGCCATGAGAAAACAAGAAA  1315

Query 1241  TCATTAAGACCACGGAGCAGCTCATCGAGGCCGTCAACAACGGTGACTTTGAGGCCTACGCGAAAATCTGTGAC  1314
            |||||||||.|||.||.||.||.|||||.|||.|||||||.||.|||||||||||||||.||||.||.||||||
Sbjct 1316  TCATTAAGATCACAGAACAACTGATCGAAGCCATCAACAATGGGGACTTTGAGGCCTACACGAAGATTTGTGAC  1389

Query 1315  CCAGGGCTGACCTCGTTTGAGCCTGAAGCACTGGGCAACCTGGTTGAAGGGATGGACTTCCACAGATTCTACTT  1388
            ||.||.||.||.||.||||||||.|||||.||.||.|||||.||.|||||.|||||.|||||.|..||.|||||
Sbjct 1390  CCGGGCCTCACATCCTTTGAGCCAGAAGCCCTTGGTAACCTCGTGGAAGGAATGGATTTCCATAAGTTTTACTT  1463

Query 1389  CGAGAACCTGCTGGCCAAGAACAGCAAGCCGATCCACACGACCATCCTGAACCCACACGTGCACGTCATTGGAG  1462
            .|||||.||.|||.||||||||||||||||.||||||||.||||||||.|||||.|||||.|||||.|||||.|
Sbjct 1464  TGAGAATCTCCTGTCCAAGAACAGCAAGCCTATCCACACCACCATCCTAAACCCTCACGTCCACGTGATTGGGG  1537

Query 1463  AGGATGCCGCCTGCATCGCTTACATCCGGCTCACGCAGTACATTGACGGGCAGGGCCGGCCCCGCACCAGCCAG  1536
            ||||.||.||.||||||||.||.|||||||||||.||||||||.|||||||||||.|||||.||||||||.|||
Sbjct 1538  AGGACGCAGCTTGCATCGCCTATATCCGGCTCACTCAGTACATCGACGGGCAGGGTCGGCCTCGCACCAGTCAG  1611

Query 1537  TCTGAGGAGACCCGCGTGTGGCACCGCCGCGACGGCAAGTGGCAGAACGTGCACTTCCACTGCTCGGGCGCGCC  1610
            ||.|||||||||||.||||||||||||||.||.||||||||||..||.||.||||..||||||||.||.||.||
Sbjct 1612  TCAGAGGAGACCCGGGTGTGGCACCGCCGGGATGGCAAGTGGCTCAATGTCCACTATCACTGCTCAGGGGCCCC  1685

Query 1611  TGTGGCCCCGCTGCAG  1626
            ||..||.|||||.|||
Sbjct 1686  TGCCGCACCGCTACAG  1701