Nucleotide Global Alignment

Description

• Query: TRCN0000488486
• Subject: XM_011515558.2
• Aligned Length: 1868
• Identities: 1482
• Gaps: 289

Alignment

Query    1  ATGGCCACCACGGTGACCTGCACCCGCTTCACCGACGAGTACCAGCTCTACGAGGATATTGGCAAGGGGGCTTT  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGGCCACCACGGTGACCTGCACCCGCTTCACCGACGAGTACCAGCTCTACGAGGATATTGGCAAGGGGGCTTT  74

Query   75  CTCTGTGGTCCGACGCTGTGTCAAGCTCTGCACCGGCCATGAGTATGCAGCCAAGATCATCAACACCAAGAAGC  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  CTCTGTGGTCCGACGCTGTGTCAAGCTCTGCACCGGCCATGAGTATGCAGCCAAGATCATCAACACCAAGAAGC  148

Query  149  TGTCAGCCAGAGATCACCAGAAGCTGGAGAGAGAGGCTCGGATCTGCCGCCTTCTGAAGCATTCCAACATCGTG  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  TGTCAGCCAGAGATCACCAGAAGCTGGAGAGAGAGGCTCGGATCTGCCGCCTTCTGAAGCATTCCAACATCGTG  222

Query  223  CGTCTCCACGACAGCATCTCCGAGGAGGGCTTCCACTACCTGGTCTTCGATCTGGTCACTGGTGGGGAGCTCTT  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  CGTCTCCACGACAGCATCTCCGAGGAGGGCTTCCACTACCTGGTCTTCGATCTGGTCACTGGTGGGGAGCTCTT  296

Query  297  TGAAGACATTGTGGCGAGAGAGTACTACAGCGAGGCTGATGCCAGTCACTGTATCCAGCAGATCCTGGAGGCCG  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  TGAAGACATTGTGGCGAGAGAGTACTACAGCGAGGCTGATGCCAGTCACTGTATCCAGCAGATCCTGGAGGCCG  370

Query  371  TTCTCCATTGTCACCAAATGGGGGTCGTCCACAGAGACCTCAAGCCGGAGAACCTGCTTCTGGCCAGCAAGTGC  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  TTCTCCATTGTCACCAAATGGGGGTCGTCCACAGAGACCTCAAGCCGGAGAACCTGCTTCTGGCCAGCAAGTGC  444

Query  445  AAAGGGGCTGCAGTGAAGCTGGCAGACTTCGGCCTAGCTATCGAGGTGCAGGGGGACCAGCAGGCATGGTTTGG  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  AAAGGGGCTGCAGTGAAGCTGGCAGACTTCGGCCTAGCTATCGAGGTGCAGGGGGACCAGCAGGCATGGTTTGG  518

Query  519  TTTCGCTGGCACACCAGGCTACCTGTCCCCTGAGGTCCTTCGCAAAGAGGCGTATGGCAAGCCTGTGGACATCT  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  TTTCGCTGGCACACCAGGCTACCTGTCCCCTGAGGTCCTTCGCAAAGAGGCGTATGGCAAGCCTGTGGACATCT  592

Query  593  GGGCATGTGGGGTGATCCTGTACATCCTGCTCGTGGGCTACCCACCCTTCTGGGACGAGGACCAGCACAAGCTG  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  GGGCATGTGGGGTGATCCTGTACATCCTGCTCGTGGGCTACCCACCCTTCTGGGACGAGGACCAGCACAAGCTG  666

Query  667  TACCAGCAGATCAAGGCTGGTGCCTATGACTTCCCGTCCCCTGAGTGGGACACCGTCACTCCTGAAGCCAAAAA  740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  TACCAGCAGATCAAGGCTGGTGCCTATGACTTCCCGTCCCCTGAGTGGGACACCGTCACTCCTGAAGCCAAAAA  740

Query  741  CCTCATCAACCAGATGCTGACCATCAACCCTGCCAAGCGCATCACAGCCCATGAGGCCCTGAAGCACCCGTGGG  814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  CCTCATCAACCAGATGCTGACCATCAACCCTGCCAAGCGCATCACAGCCCATGAGGCCCTGAAGCACCCGTGGG  814

Query  815  TCTGCCAACGCTCCACGGTAGCATCCATGATGCACAGACAGGAGACTGTGGAGTGTCTGAAAAAGTTCAATGCC  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TCTGCCAACGCTCCACGGTAGCATCCATGATGCACAGACAGGAGACTGTGGAGTGTCTGAAAAAGTTCAATGCC  888

Query  889  AGGAGAAAGCTCAAGGGAGCCATCCTCACCACCATGCTGGCCACACGGAATTTCTCAGTGGGCAGACAGACCAC  962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  AGGAGAAAGCTCAAGGGAGCCATCCTCACCACCATGCTGGCCACACGGAATTTCTCAGTGGGCAGACAGACCAC  962

Query  963  CGCTCCGGCCACAATGTCCACCGCGGCCTCCGGCACCACCATGGGGCTGGTGGAACAAGCCAAGAGTTTACTCA  1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  CGCTCCGGCCACAATGTCCACCGCGGCCTCCGGCACCACCATGGGGCTGGTGGAACAAGCCAAGAGTTTACTCA  1036

Query 1037  ACAAGAAAGCAGATGGAGTCAAGCCCCAGACGAATAGCACCAAAAACAGTGCAGCCGCCACCAGCCCCAAAGGG  1110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  ACAAGAAAGCAGATGGAGTCAAGCCCCAGACGAATAGCACCAAAAACAGTGCAGCCGCCACCAGCCCCAAAGGG  1110

Query 1111  ACGCTTCCTCCTGCCGCCCTGGAGCCTCAAACCACCGTCATCCATAACCCAGTGGACGGGATTAAGGAGTCTTC  1184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  ACGCTTCCTCCTGCCGCCCTGGAGCCTCAAACCACCGTCATCCATAACCCAGTGGACGGGATTAAGGAGTCTTC  1184

Query 1185  TGACAGTGCCAATACCACCATAGAGGATGAAGACGCTAAAGCCCGGAAGCAG---------------GAGATCA  1243
            ||||||||||||||||||||||||||||||||||||||||||||    .|||               |||.|||
Sbjct 1185  TGACAGTGCCAATACCACCATAGAGGATGAAGACGCTAAAGCCC----CCAGGGTCCCCGACATCCTGAGCTCA  1254

Query 1244  TT----AAGACCACGG-------AGCAGCTCATCGAGG---CCGT--------CAACAACGG-TGACTTTGAGG  1294
            .|    |.|..|.|||       ||.|||    |||||   ||.|        ||.|..||| |..|||| ||.
Sbjct 1255  GTGAGGAGGGGCTCGGGAGCCCCAGAAGC----CGAGGGGCCCCTGCCCTGCCCATCTCCGGCTCCCTTT-AGC  1323

Query 1295  CC-------------TACGCGAAAATCTGTGAC--CCAGGGCTGACCTCGTTTGAG----------------CC  1337
            ||             |.|.|.|..||||.||||  |     ||||.||| |.||||                ||
Sbjct 1324  CCCCTGCCAGCCCCATCCCCCAGGATCTCTGACATC-----CTGAACTC-TGTGAGAAGGGGTTCAGGAACCCC  1391

Query 1338  TGAAGCACTGGGCAACCTGGTTGAAGGG--------ATGGACTTCCACAGATTCTACTTCGAGAACC----TGC  1399
            .|||||...||||..|||....|..|||        .| |.||..|.|.|..|||.||   ||..||    |.|
Sbjct 1392  AGAAGCCGAGGGCCCCCTCTCAGCGGGGCCCCCGCCCT-GCCTGTCTCCGGCTCTCCT---AGGCCCCCTGTCC  1461

Query 1400  TGGCCAAGAACAGCAAGCCGATCCACACGA------CCATCCTGAAC----------------------CCACA  1445
            |  ||            |||..||.||.||      .||||||||||                      ||.||
Sbjct 1462  T--CC------------CCGTCCCCCAGGATCTCTGACATCCTGAACTCTGTGAGGAGGGGCTCAGGGACCCCA  1521

Query 1446  -----CGTG-----CACGTCATTGGAGAGGATGCCG-CCTGC------------ATCGCTTACATCCGGCTCAC  1496
                 ||.|     |.||.||.|||   ||...||| |||||            |||.||..|..||.||.|||
Sbjct 1522  GAAGCCGAGGGCCCCTCGCCAGTGG---GGCCCCCGCCCTGCCCATCTCCGACTATCCCTGGCCCCCTGCCCAC  1592

Query 1497  GCAGTACATTGACGG--------GCAGGGC--CGGC--CCCGCACCAG----------CCAGTC---------T  1539
            .|    |||.||.||        .||||||  |.||  |||.||||.|          ||||.|         |
Sbjct 1593  CC----CATGGATGGATGACATCCCAGGGCTGCTGCCACCCCCACCTGTGGGGAGACACCAGACTGGGGGTGGT  1662

Query 1540  GAGGAGACCCGCGT------GTGGCACC---GCCGCG---ACGGCAAGTGGCAGAAC-GT-----GCACTTCCA  1595
            |.|||||..|.|.|      |.|||..|   |||.||   .|||||  ||||||..| ||     |||..||..
Sbjct 1663  GTGGAGATACTCTTAGAGAAGAGGCTGCTGGGCCACGGGCTCGGCA--TGGCAGGGCAGTGGCTAGCAGCTCAT  1734

Query 1596  CTGCT----CGGGCGCGCCTGTGGCCCCGCTGCAG---------------------------------------  1626
            |||.|    .|||   ||.||..||||  .|||||                                       
Sbjct 1735  CTGATTTTAAGGG---GCTTGCTGCCC--TTGCAGAAGTGGAGGGGTGTGCCCAAAGGAGCCTGCCTGGAAGGT  1803

Query 1627  ------------------  1626
                              
Sbjct 1804  CACCCCATCAGGTTGGCA  1821