Nucleotide Global Alignment

Description

Query:
TRCN0000488612
Subject:
XM_011539542.2
Aligned Length:
3666
Identities:
2597
Gaps:
1068

Alignment

Query    1  ATGGAGGCGGCGCGCACGGAGCGCCCCGCAGGCAGGCCGGGGGCGCCGCTTGTCCGGACGGGGCTCCTACTCTT  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  GTCGACGTGGGTCCTGGCCGGCGCCGAGATCACTTGGGACGCGACAGGCGGTCCCGGACGCCCGGCGGCCCCGG  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  CTTCGCGGCCACCGGCGTTGTCTCCACTCTCGCCGCGGGCAGTGGCCAGCCAGTGGCCGGAGGAGCTGGCGTCG  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  GCGCGGAGAGCCGCCGTGCTGGGGCGCCGGGCCGGACCAGAGCTGCTGCCCCAGCAGGGCGGCGGCAGAGGCGG  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  TGAGATGCAGGTGGAAGCCGGAGGGACATCACCGGCAGGCGAGCGGCGGGGCCGGGGCATCCCAGCTCCTGCCA  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  AGCTTGGCGGCGCGAGGAGGAGTCGCCGGGCGCAGCCCCCAATCACCCAGGAACGCGGGGACGCCTGGGCCACT  444
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  445  GCTCCGGCCGATGGTTCCAGAGGAAGCCGTCCCCTTGCTAAGGGTTCCCGGGAGGAGGTGAAGGCGCCGCGGGC  518
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  519  TGGGGGGTCGGCGGCTGAAGACCTCCGGCTGCCCAGCACCTCCTTCGCGCTGACCGGGGACTCGGCCCACAACC  592
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  593  AAGCCATGGTGCACTGGTCGGGACACAACAGCAGCGTCATACTTATCCTGACGAAGCTGTATGACTTCAACCTG  666
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  667  GGCAGCGTGACTGAGAGTTCACTATGGAGGTCGACAGATTATGGCACCACCTATGAAAAGCTGAATGACAAAGT  740
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  741  GGGTTTGAAGACTGTCCTCAGTTACCTCTATGTCAATCCAACCAACAAAAGGAAGATTATGCTTCTCAGTGATC  814
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  815  CTGAGATGGAGAGCAGCATATTGATCAGCTCAGACGAAGGGGCGACCTATCAGAAGTATCGGCTCACCTTCTAT  888
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  889  ATCCAGAGCCTGCTCTTTCATCCCAAGCAAGAGGACTGGGTGCTGGCCTACAGTTTGGATCAAAAGCTCTACAG  962
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  963  CTCCATGGACTTTGGAAGACGGTGGCAACTCATGCATGAACGCATCACACCCAACAGGTTTTATTGGTCGGTGG  1036
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query 1037  CCGGATTGGATAAGGAGGCGGACCTGGTGCACATGGAGGTGCGGACCACGGATGGATATGCTCACTACCTCACC  1110
                                            ||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  --------------------------------ATGGAGGTGCGGACCACGGATGGATATGCTCACTACCTCACC  42

Query 1111  TGCAGGATCCAGGAATGTGCCGAGACAACTAGAAGTGGGCCTTTTGCCCGCTCCATTGACATCAGTTCCCTGGT  1184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   43  TGCAGGATCCAGGAATGTGCCGAGACAACTAGAAGTGGGCCTTTTGCCCGCTCCATTGACATCAGTTCCCTGGT  116

Query 1185  TGTCCAGGATGAATATATCTTCATTCAGGTAACAACTAGTGGAAGAGCCAGCTACTACGTGTCTTATCGAAGAG  1258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  117  TGTCCAGGATGAATATATCTTCATTCAGGTAACAACTAGTGGAAGAGCCAGCTACTACGTGTCTTATCGAAGAG  190

Query 1259  AGGCCTTTGCTCAGATAAAGCTGCCTAAGTACTCGTTGCCAAAGGACATGCACATCATCAGTACAGACGAGAAC  1332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  191  AGGCCTTTGCTCAGATAAAGCTGCCTAAGTACTCGTTGCCAAAGGACATGCACATCATCAGTACAGACGAGAAC  264

Query 1333  CAAGTATTTGCTGCGGTCCAAGAATGGAACCAGAATGACACGTACAACCTCTACATCTCAGACACGCGTGGGAT  1406
            |||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||
Sbjct  265  CAAGTATTTGCTGCGGTCCAAGAATGGAACCAGAACGACACGTACAACCTCTACATCTCAGACACGCGTGGGAT  338

Query 1407  TTACTTCACTCTGGCCATGGAGAACATCAAGAGCAGCAGAGGTCTAATGGGGAACATCATTATTGAATTGTATG  1480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  339  TTACTTCACTCTGGCCATGGAGAACATCAAGAGCAGCAGAGGTCTAATGGGGAACATCATTATTGAATTGTATG  412

Query 1481  AGGTAGCAGGTATCAAAGGGATATTTCTGGCAAACAAGAAGGTGGACGACCAGGTGAAGACATACATCACTTAC  1554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  413  AGGTAGCAGGTATCAAAGGGATATTTCTGGCAAACAAGAAGGTGGACGACCAGGTGAAGACATACATCACTTAC  486

Query 1555  AACAAAGGCAGGGATTGGCGCCTGCTGCAAGCTCCGGATGTGGACCTGAGAGGAAGCCCAGTGCACTGCCTGCT  1628
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  487  AACAAAGGCAGGGATTGGCGCCTGCTGCAAGCTCCGGATGTGGACCTGAGAGGAAGCCCAGTGCACTGCCTGCT  560

Query 1629  GCCCTTCTGTTCCTTACATCTGCACCTGCAACTCTCTGAAAATCCATATTCCTCAGGAAGAATCTCTAGCAAGG  1702
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  561  GCCCTTCTGTTCCTTACATCTGCACCTGCAACTCTCTGAAAATCCATATTCCTCAGGAAGAATCTCTAGCAAGG  634

Query 1703  AGACAGCCCCAGGACTTGTGGTGGCTACAGGCAACATTGGCCCGGAGCTCTCATATACTGATATTGGTGTGTTC  1776
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  635  AGACAGCCCCAGGACTTGTGGTGGCTACAGGCAACATTGGCCCGGAGCTCTCATATACTGATATTGGTGTGTTC  708

Query 1777  ATCTCCTCCGATGGGGGCAACACATGGAGACAGATCTTTGATGAAGAGTACAATGTCTGGTTCCTAGACTGGGG  1850
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  709  ATCTCCTCCGATGGGGGCAACACATGGAGACAGATCTTTGATGAAGAGTACAATGTCTGGTTCCTAGACTGGGG  782

Query 1851  TGGTGCCCTCGTGGCCATGAAACACACACCTCTGCCAGTCAGGCATTTGTGGGTGAGTTTTGATGAGGGCCACT  1924
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  783  TGGTGCCCTCGTGGCCATGAAACACACACCTCTGCCAGTCAGGCATTTGTGGGTGAGTTTTGATGAGGGCCACT  856

Query 1925  CTTGGGACAAGTATGGTTTCACTTCGGTTCCTCTCTTTGTTGACGGGGCTCTGGTGGAGGCAGGAATGGAGACC  1998
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  857  CTTGGGACAAGTATGGTTTCACTTCGGTTCCTCTCTTTGTTGACGGGGCTCTGGTGGAGGCAGGAATGGAGACC  930

Query 1999  CACATCATGACAGTTTTTGGCCACTTCAGCCTCCGCTCCGAATGGCAATTGGTGAAAGTGGACTACAAATCTAT  2072
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  931  CACATCATGACAGTTTTTGGCCACTTCAGCCTCCGCTCCGAATGGCAATTGGTGAAAGTGGACTACAAATCTAT  1004

Query 2073  CTTCAGCCGGCATTGCACCAAGGAGGACTATCAGACCTGGCACCTGCTCAATCAGGGAGAGCCTTGTGTCATGG  2146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1005  CTTCAGCCGGCATTGCACCAAGGAGGACTATCAGACCTGGCACCTGCTCAATCAGGGAGAGCCTTGTGTCATGG  1078

Query 2147  GAGAAAGGAAAATATTCAAGAAACGTAAGCCAGGAGCTCAGTGTGCCCTGGGCCGAGACCACTCAGGATCAGTG  2220
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079  GAGAAAGGAAAATATTCAAGAAACGTAAGCCAGGAGCTCAGTGTGCCCTGGGCCGAGACCACTCAGGATCAGTG  1152

Query 2221  GTCTCAGAACCCTGTGTCTGTGCCAATTGGGACTTCGAGTGTGACTATGGGTATGAGAGACATGGGGAGAGCCA  2294
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1153  GTCTCAGAACCCTGTGTCTGTGCCAATTGGGACTTCGAGTGTGACTATGGGTATGAGAGACATGGGGAGAGCCA  1226

Query 2295  GTGTGTCCCAGCTTTCTGGTACAATCCAGCATCCCCATCAAAGGACTGCAGCCTTGGTCAAAGCTACCTTAACA  2368
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1227  GTGTGTCCCAGCTTTCTGGTACAATCCAGCATCCCCATCAAAGGACTGCAGCCTTGGTCAAAGCTACCTTAACA  1300

Query 2369  GCACTGGGTATCGGCGGATTGTGTCCAACAACTGCACAGATGGGCTAAGGGAGAAGTACACCGCCAAGGCCCAG  2442
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1301  GCACTGGGTATCGGCGGATTGTGTCCAACAACTGCACAGATGGGCTAAGGGAGAAGTACACCGCCAAGGCCCAG  1374

Query 2443  ATGTGCCCTGGAAAAGCCCCTCGGGGCCTCCATGTGGTGACGACCGATGGGCGGCTGGTGGCAGAGCAGGGGCA  2516
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375  ATGTGCCCTGGAAAAGCCCCTCGGGGCCTCCATGTGGTGACGACCGATGGGCGGCTGGTGGCAGAGCAGGGGCA  1448

Query 2517  CAATGCAACTTTCATCATCCTCATGGAGGAGGGTGATCTACAAAGGACAAACATCCAGCTTGACTTTGGGGATG  2590
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1449  CAATGCAACTTTCATCATCCTCATGGAGGAGGGTGATCTACAAAGGACAAACATCCAGCTTGACTTTGGGGATG  1522

Query 2591  GGATTGCTGTGTCCTACGCAAACTTCAGCCCCATCGAGGACGGCATCAAGCACGTGTATAAGAGTGCGGGGATC  2664
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1523  GGATTGCTGTGTCCTACGCAAACTTCAGCCCCATCGAGGACGGCATCAAGCACGTGTATAAGAGTGCGGGGATC  1596

Query 2665  TTCCAGGTGACAGCCTATGCAGAGAACAACCTTGGCTCAGACACAGCTGTCCTCTTCCTGCATGTGGTTTGTCC  2738
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1597  TTCCAGGTGACAGCCTATGCAGAGAACAACCTTGGCTCAGACACAGCTGTCCTCTTCCTGCATGTGGTTTGTCC  1670

Query 2739  TGTGGAGCATGTTCATCTCCGAGTTCCATTTGTTGCCATAAGAAATAAGGAGGTCAACATCAGTGCAGTCGTGT  2812
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1671  TGTGGAGCATGTTCATCTCCGAGTTCCATTTGTTGCCATAAGAAATAAGGAGGTCAACATCAGTGCAGTCGTGT  1744

Query 2813  GGCCCAGTCAACTGGGGACCCTTACCTATTTCTGGTGGTTCGGCAATAGCACAAAGCCTCTCATCACTTTGGAC  2886
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1745  GGCCCAGTCAACTGGGGACCCTTACCTATTTCTGGTGGTTCGGCAATAGCACAAAGCCTCTCATCACTTTGGAC  1818

Query 2887  AGCAGCATTTCCTTCACATTCCTTGCAGAAGGAACCGACACCATCACAGTCCAGGTGGCTGCTGGGAATGCCCT  2960
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1819  AGCAGCATTTCCTTCACATTCCTTGCAGAAGGAACCGACACCATCACAGTCCAGGTGGCTGCTGGGAATGCCCT  1892

Query 2961  CATCCAGGACACAAAAGAGATTGCAGTTCATGAATATTTCCAGTCCCAGCTTTTATCATTCTCTCCTAATCTGG  3034
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1893  CATCCAGGACACAAAAGAGATTGCAGTTCATGAATATTTCCAGTCCCAGCTTTTATCATTCTCTCCTAATCTGG  1966

Query 3035  ATTACCACAATCCTGACATTCCTGAGTGGAGAAAAGATATTGGCAATGTCATCAAGCGAGCTCTGGTTAAAGTA  3108
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1967  ATTACCACAATCCTGACATTCCTGAGTGGAGAAAAGATATTGGCAATGTCATCAAGCGAGCTCTGGTTAAAGTA  2040

Query 3109  ACCAGTGTCCCAGAGGACCAGATCCTCATTGCCGTGTTTCCTGGTCTCCCCACTTCAGCAGAGCTTTTCATTCT  3182
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2041  ACCAGTGTCCCAGAGGACCAGATCCTCATTGCCGTGTTTCCTGGTCTCCCCACTTCAGCAGAGCTTTTCATTCT  2114

Query 3183  TCCACCCAAGAACCTGACAGAGAGGAGGAAAGGCAATGAAGGGGACCTGGAACAAATTGTAGAAACACTGTTTA  3256
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2115  TCCACCCAAGAACCTGACAGAGAGGAGGAAAGGCAATGAAGGGGACCTGGAACAAATTGTAGAAACACTGTTTA  2188

Query 3257  ATGCTCTCAACCAAAATTTGGTCCAGTTTGAGCTGAAGCCGGGGGTACAAGTCATTGTGTATGTCACACAGCTG  3330
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2189  ATGCTCTCAACCAAAATTTGGTCCAGTTTGAGCTGAAGCCGGGGGTACAAGTCATTGTGTATGTCACACAGCTG  2262

Query 3331  ACGTTAGCTCCATTGGTGGACTCCAGTGCTGGGCACAGCAGCTCAGCCATGCTTATGCTATTATCAGTGGTATT  3404
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2263  ACGTTAGCTCCATTGGTGGACTCCAGTGCTGGGCACAGCAGCTCAGCCATGCTTATGCTATTATCAGTGGTATT  2336

Query 3405  TGTTGGCCTGGCTGTGTTTTTGATCTACAAGTTTAAAAGGAAAATCCCTTGGATTAACATCTATGCTCAAGTCC  3478
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2337  TGTTGGCCTGGCTGTGTTTTTGATCTACAAGTTTAAAAGGAAAATCCCTTGGATTAACATCTATGCTCAAGTCC  2410

Query 3479  AACACGACAAGGAGCAGGAGATGATTGGGTCAGTGAGCCAAAGTGAAAACGCCCCCAAAATCACACTCAGTGAC  3552
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2411  AACACGACAAGGAGCAGGAGATGATTGGGTCAGTGAGCCAAAGTGAAAACGCCCCCAAAATCACACTCAGTGAC  2484

Query 3553  TTTACGGAGCCTGAGGAGCTGCTGGACAAAGAGCTGGACACGCGGGTCATAGGAGGCATTGCCACTATTGCAAA  3626
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2485  TTTACGGAGCCTGAGGAGCTGCTGGACAAAGAGCTGGACACGCGGGTCATAGGAGGCATTGCCACTATTGCAAA  2558

Query 3627  CAGCGAAAGCACAAAGGAGATCCCCAACTGCACTAGTGTT  3666
            ||||||||||||||||||||||||||||||||||||||||
Sbjct 2559  CAGCGAAAGCACAAAGGAGATCCCCAACTGCACTAGTGTT  2598

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