Construct: ORF TRCN0000488612

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF019300.1_s317c1
DNA Barcode:
GTGGATCTCCCCGGTCACGTTGGC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SORCS3 (22986)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000488612
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 22986 SORCS3 sortilin related VPS10 doma... NM_014978.3 99.9% 100% 1368C>T
2 human 22986 SORCS3 sortilin related VPS10 doma... XM_011539542.2 70.8% 70.8% 0_1ins1068;300C>T
3 mouse 66673 Sorcs3 sortilin-related VPS10 doma... NM_025696.3 88.2% 92.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
75
ORF end:
3741
ORF length:
3666
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61caggcttcgc caccatggag gcggcgcgca cggagcgccc cgcaggcagg ccgggggcgc
121cgcttgtccg gacggggctc ctactcttgt cgacgtgggt cctggccggc gccgagatca
181cttgggacgc gacaggcggt cccggacgcc cggcggcccc ggcttcgcgg ccaccggcgt
241tgtctccact ctcgccgcgg gcagtggcca gccagtggcc ggaggagctg gcgtcggcgc
301ggagagccgc cgtgctgggg cgccgggccg gaccagagct gctgccccag cagggcggcg
361gcagaggcgg tgagatgcag gtggaagccg gagggacatc accggcaggc gagcggcggg
421gccggggcat cccagctcct gccaagcttg gcggcgcgag gaggagtcgc cgggcgcagc
481ccccaatcac ccaggaacgc ggggacgcct gggccactgc tccggccgat ggttccagag
541gaagccgtcc ccttgctaag ggttcccggg aggaggtgaa ggcgccgcgg gctggggggt
601cggcggctga agacctccgg ctgcccagca cctccttcgc gctgaccggg gactcggccc
661acaaccaagc catggtgcac tggtcgggac acaacagcag cgtcatactt atcctgacga
721agctgtatga cttcaacctg ggcagcgtga ctgagagttc actatggagg tcgacagatt
781atggcaccac ctatgaaaag ctgaatgaca aagtgggttt gaagactgtc ctcagttacc
841tctatgtcaa tccaaccaac aaaaggaaga ttatgcttct cagtgatcct gagatggaga
901gcagcatatt gatcagctca gacgaagggg cgacctatca gaagtatcgg ctcaccttct
961atatccagag cctgctcttt catcccaagc aagaggactg ggtgctggcc tacagtttgg
1021atcaaaagct ctacagctcc atggactttg gaagacggtg gcaactcatg catgaacgca
1081tcacacccaa caggttttat tggtcggtgg ccggattgga taaggaggcg gacctggtgc
1141acatggaggt gcggaccacg gatggatatg ctcactacct cacctgcagg atccaggaat
1201gtgccgagac aactagaagt gggccttttg cccgctccat tgacatcagt tccctggttg
1261tccaggatga atatatcttc attcaggtaa caactagtgg aagagccagc tactacgtgt
1321cttatcgaag agaggccttt gctcagataa agctgcctaa gtactcgttg ccaaaggaca
1381tgcacatcat cagtacagac gagaaccaag tatttgctgc ggtccaagaa tggaaccaga
1441atgacacgta caacctctac atctcagaca cgcgtgggat ttacttcact ctggccatgg
1501agaacatcaa gagcagcaga ggtctaatgg ggaacatcat tattgaattg tatgaggtag
1561caggtatcaa agggatattt ctggcaaaca agaaggtgga cgaccaggtg aagacataca
1621tcacttacaa caaaggcagg gattggcgcc tgctgcaagc tccggatgtg gacctgagag
1681gaagcccagt gcactgcctg ctgcccttct gttccttaca tctgcacctg caactctctg
1741aaaatccata ttcctcagga agaatctcta gcaaggagac agccccagga cttgtggtgg
1801ctacaggcaa cattggcccg gagctctcat atactgatat tggtgtgttc atctcctccg
1861atgggggcaa cacatggaga cagatctttg atgaagagta caatgtctgg ttcctagact
1921ggggtggtgc cctcgtggcc atgaaacaca cacctctgcc agtcaggcat ttgtgggtga
1981gttttgatga gggccactct tgggacaagt atggtttcac ttcggttcct ctctttgttg
2041acggggctct ggtggaggca ggaatggaga cccacatcat gacagttttt ggccacttca
2101gcctccgctc cgaatggcaa ttggtgaaag tggactacaa atctatcttc agccggcatt
2161gcaccaagga ggactatcag acctggcacc tgctcaatca gggagagcct tgtgtcatgg
2221gagaaaggaa aatattcaag aaacgtaagc caggagctca gtgtgccctg ggccgagacc
2281actcaggatc agtggtctca gaaccctgtg tctgtgccaa ttgggacttc gagtgtgact
2341atgggtatga gagacatggg gagagccagt gtgtcccagc tttctggtac aatccagcat
2401ccccatcaaa ggactgcagc cttggtcaaa gctaccttaa cagcactggg tatcggcgga
2461ttgtgtccaa caactgcaca gatgggctaa gggagaagta caccgccaag gcccagatgt
2521gccctggaaa agcccctcgg ggcctccatg tggtgacgac cgatgggcgg ctggtggcag
2581agcaggggca caatgcaact ttcatcatcc tcatggagga gggtgatcta caaaggacaa
2641acatccagct tgactttggg gatgggattg ctgtgtccta cgcaaacttc agccccatcg
2701aggacggcat caagcacgtg tataagagtg cggggatctt ccaggtgaca gcctatgcag
2761agaacaacct tggctcagac acagctgtcc tcttcctgca tgtggtttgt cctgtggagc
2821atgttcatct ccgagttcca tttgttgcca taagaaataa ggaggtcaac atcagtgcag
2881tcgtgtggcc cagtcaactg gggaccctta cctatttctg gtggttcggc aatagcacaa
2941agcctctcat cactttggac agcagcattt ccttcacatt ccttgcagaa ggaaccgaca
3001ccatcacagt ccaggtggct gctgggaatg ccctcatcca ggacacaaaa gagattgcag
3061ttcatgaata tttccagtcc cagcttttat cattctctcc taatctggat taccacaatc
3121ctgacattcc tgagtggaga aaagatattg gcaatgtcat caagcgagct ctggttaaag
3181taaccagtgt cccagaggac cagatcctca ttgccgtgtt tcctggtctc cccacttcag
3241cagagctttt cattcttcca cccaagaacc tgacagagag gaggaaaggc aatgaagggg
3301acctggaaca aattgtagaa acactgttta atgctctcaa ccaaaatttg gtccagtttg
3361agctgaagcc gggggtacaa gtcattgtgt atgtcacaca gctgacgtta gctccattgg
3421tggactccag tgctgggcac agcagcTCAG CCATGCTTAT GCTATTATCA GTGGTATTTG
3481TTGGCCTGGC TGTGTTTTTG ATCTACAAGT TTAAAAGGAA AATCCCTTGG ATTAACATCT
3541ATGCTCAAGT CCAACACGAC AAGGAGCAGG AGATGATTGG GTCAGTGAGC CAAAGTGAAA
3601ACGCCCCCAA AATCACACTC AGTGACTTTA CGGAGCCTGA GGAGCTGCTG GACAAAGAGC
3661TGGACACGCG GGTCATAGGA GGCATTGCCA CTATTGCAAA CAGCGAAAGC ACAAAGGAGA
3721TCCCCAACTG CACTAGTGTT GACCCAGCTT TCTTGTACAA AGTGGTTGAT ATCGGTAAGC
3781CTATCCCTAA CCCTCTCCTC GGTCTCGATT CTACGTAGTA ATGAACTAGT CCGTAACTTG
3841AAAGTATTTC GATTTCTTGG CTTTATATAT CTTGTGGAAA GGACGAGTGG ATCTCCCCGG
3901TCACGTTGGC ACGCGTTAAG TCgacaatca acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)

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