Nucleotide Global Alignment
Description
- Query:
- TRCN0000488694
- Subject:
- XR_001747959.2
- Aligned Length:
- 5546
- Identities:
- 1102
- Gaps:
- 4442
Alignment
Query 1 --------------------------------ATGGCGTACTCCACAGTGCAGAGAGTCGCTCTGGCTTCTGGG 42
||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GGCGTCTGCACCTGCGACCACCGTGAGCAGTCATGGCGTACTCCACAGTGCAGAGAGTCGCTCTGGCTTCTGGG 74
Query 43 CTTGTCCTGGCTCTGTCGCTGCTGCTGCCCAAGGCCTTCCTGTCCCGCGGGAAGCGGCAGGAGCCGCCGCCGAC 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 CTTGTCCTGGCTCTGTCGCTGCTGCTGCCCAAGGCCTTCCTGTCCCGCGGGAAGCGGCAGGAGCCGCCGCCGAC 148
Query 117 ACCTG-------------------------------------------------AAGGAAAATTGGGCCGATTT 141
||||| ||||||||||||||||||||
Sbjct 149 ACCTGAAGAAAACTAAGAGTGAGAACTGACAAAAAGCCATTGGATTTGACGGTTAAGGAAAATTGGGCCGATTT 222
Query 142 CCACCTATGATGCATCATCACCAGGCACACTCAGATGGCCAGACTCCTGGGGCTCGTTTCCAGAGGTCTCACCT 215
||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CCACCTATGATGCATCATCACCAGGCACCCTCAGATGGCCAGACTCCTGGGGCTCGTTTCCAGAGGTCTCACCT 296
Query 216 TGCCGAGGCATTTGCAAAGGCCAAAGGATCAGGTGGAGGTGCTGGAGGAGGAGGTAGTGGAAGAGGTCTGATGG 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TGCCGAGGCATTTGCAAAGGCCAAAGGATCAGGTGGAGGTGCTGGAGGAGGAGGTAGTGGAAGAGGTCTGATGG 370
Query 290 GGCAGATTATTCCAATCTACGGTTTTGGGATTTTTTTATATATACTGTACATTCTATTTA-------------- 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GGCAGATTATTCCAATCTACGGTTTTGGGATTTTTTTATATATACTGTACATTCTATTTAAGGTAAGTAGAATC 444
Query 350 -------------------------------------------------------------------------- 349
Sbjct 445 ATCCTAATCATATTACATCAATGAAAATCTAATATGGCAATAAAAATCATTGTCTACATTAAAACTTCTTATAG 518
Query 350 -------------------------------------------------------------------------- 349
Sbjct 519 TTCATAAAATTATTTCAAATCCATCATCTCTTTAAATCCTGCCTCCTCTTCATGAGGTACTTAGGATAGCCATT 592
Query 350 -------------------------------------------------------------------------- 349
Sbjct 593 ATTTCAGTTTCACATAAGAAATGTTTACTCAATGTTTAAGTGTTTTGCCCCAAAATTCACAACTAACAAGGCAG 666
Query 350 -------------------------------------------------------------------------- 349
Sbjct 667 AACTAGGACTTGAACATGGATCTTTTGGTTCTTAATCCAGTGAGTGATACAATTCAATGCACTCCCCTGCCAAA 740
Query 350 -------------------------------------------------------------------------- 349
Sbjct 741 AAAAAAAAAAAAAAAAAAAAAATTAACATCTTTACAGGCCGAAAAGGAATAAAGATTTTCTAAGAAGAGCTTTT 814
Query 350 -------------------------------------------------------------------------- 349
Sbjct 815 ATTATTGGGATTGGCACAGTGATTTCCAAATAGCCATTGTAAGGCCAAATAATGACACCACTTTATCCTGCTTG 888
Query 350 -------------------------------------------------------------------------- 349
Sbjct 889 TTTCTCCACAGGAATTTGAGATGCTGTTTTTAATATTATCTCCAATAATTCTCCTGAGACAGAACTGTCCCTCC 962
Query 350 -------------------------------------------------------------------------- 349
Sbjct 963 TGAAATTAAGCCTGATATTTCCTAGCTCTGGGGAGACATGGGTGTAGGTTCTTTAAAGCAGACCCCCAGTTGAG 1036
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1037 TTCCACCTCCAGGCAGGCCTTTGCAGGCCCCTGGCCCCTGTACTGTGAATTAGAGGCAGAAGACTCACTTTGCC 1110
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1111 CTCCTGTCTAGAGTAAGCTTAAATAAGATGAGTTCTTTCTCGCCCAGGAATTCTGCAGGCAGTCTGAGTTGAGT 1184
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1185 CTGTAAGAATGCCCATAGGGTGCCACACATCCCTTTTAGATGAGCATGAGCAAGGAAGATGACCTGTAGGGAGA 1258
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1259 TTTTTTTTCCCTTGTGTTAGAAATGCTTGTTCTCTGGTGCCATAAAGAAGCAGCACTTGGACGTACATTTAATT 1332
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1333 TCCTCAGCAAGGCCATTTTTACTTTCTGCAGAAAGGGTACACTCACCAGCGGTTTTGCCGTGAGAGTACACCGA 1406
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1407 ACAAAGGAGACAGGGTCATTTATAACCTGACGCATCCACCTTACTGCTGTGTCCGGTTTCCATTGGCTGGAACG 1480
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1481 GGACCTCACATTCTGTATTTGTGCTGATTGGCTAGCGACTTAGAACTTTTTAAAAGAGGCAAAGGCAGAGGAGA 1554
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1555 ACAAAGGAAGGAGGAACTAACTTGTGGAATGCTGAGAAAGGTAAAAACACCTTCATATAAGGAAGAGGAACAGG 1628
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1629 CTATGACCTCATGCTTGCTTTGACAAGTATAAGCATGCCAGGGCAAATATTTAGGCTAAACTGTGGGAGCTAAG 1702
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1703 AACAGTTGATTTCTTTATTATGGCTAGCAGATATCTAAGCATGTTAGCACAGGTTCTTGAATAAATTTTGCTTC 1776
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1777 TAAGAGAAGTTACTATTCCTAATTATATGGGGAGTAAAGTCTCTTTGAAGAGGAATCTCTACTTTACTTTTTAC 1850
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1851 ACTTGTGCTTTGATAATTTTTTACTTGGAAACCTCATCTTTTGGCGTTTTTTTTTTTGAGCTATTTCTCTAGTG 1924
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1925 TTGCTATTTGATTTAATTTCTGACCTTCATTTTTGTTTCCCAACCTTTTTTTTTTGTTTGATATGAGGGGTTCC 1998
Query 350 ---------------------------------------------------AGCTCTCAAAGGGGAAAACAACT 372
|||||||||||||||||||||||
Sbjct 1999 GTGACTGAGGTTCTGAGCTGCTGTTGATGTGCTATACCTCCTTCAATTCTCAGCTCTCAAAGGGGAAAACAACT 2072
Query 373 GCAGAGGATGGGAAATGCTATACTGCCATGCCTGGAAACACCCACAGGAAAATTACCAGTTTTGAGCTTGCTCA 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 GCAGAGGATGGGAAATGCTATACTGCCATGCCTGGAAACACCCACAGGAAAATTACCAGTTTTGAGCTTGCTCA 2146
Query 447 ACTGCAAGAAAAACTGAAGGAGACAGAAGCAGCCATGGAAAAATTATTCAACAGAGTGGGACCTAATGGTGAG- 519
||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||
Sbjct 2147 ACTGCAAGAAAAACTGAAGGAGACAGAAGCAGCCATGGAAAAATTAATCAACAGAGTGGGACCTAATGGTGAGA 2220
Query 520 -------------------------------------------------------------------------- 519
Sbjct 2221 GATCAGAATGCCCTGCGTACAGTCTGGAAAAGTAACATGTGCCGCCTGAAGAGACAAGAGTTTGTGATAAGCAG 2294
Query 520 -AGAGCACAGACTGTGACTTCTGACCAAGAGAAACGGTTGCTACATCAGCTCCGAGAAATCACCAGGGTCATGA 592
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295 CAGAGCACAGACTGTGACTTCTGACCAAGAGAAACGGTTGCTACATCAGCTCCGAGAAATCACCAGGGTCATGA 2368
Query 593 AAGAAGGAAAATTCATTGACAGATTTTCTCCAGAGAAAGAAGCTGAGGAGGCCCCTTACATGGAGGACTGGGAA 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369 AAGAAGGAAAATTCATTGACAGATTTTCTCCAGAGAAAGAAGCTGAGGAGGCCCCTTACATGGAGGACTGGGAA 2442
Query 667 GGTTACCCTGAAGAGACTTACCCAATTTATGACCTTTCAGACTGTATCAAGCGTAGGCAAGAAACAATCTTGGT 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443 GGTTACCCTGAAGAGACTTACCCAATTTATGACCTTTCAGACTGTATCAAGCGTAGGCAAGAAACAATCTTGGT 2516
Query 741 GGATTACCCTGACCCAAAAGAACTTTTCTGCTGAAGAAATAGCTGAAAGAATGGGAATGATAGAAGAGGAAGAA 814
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517 GGATTACCCTGACCCAAAAGAAC-TTTCTGCTGAAGAAATAGCTGAAAGAATGGGAATGATAGAAGAGGAAGAA 2589
Query 815 TCAGATCATTTGGGTTGGGAAAGTCTGCCCACTGACCCCAGAGCCCAGGAAGATAATTCTGTTACCTCGTGTGA 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2590 TCAGATCATTTGGGTTGGGAAAGTCTGCCCACTGACCCCAGAGCCCAGGAAGATAATTCTGTTACCTCGTGTGA 2663
Query 889 TCCAAAGCCAGAAACATGTTCCTGCTGTTTTCATGAAGACGAGGATCCTGCTGTCTTGGCAGAGAATGCTGGAT 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2664 TCCAAAGCCAGAAACATGTTCCTGCTGTTTTCATGAAGACGAGGATCCTGCTGTCTTGGCAGAGAATGCTGGAT 2737
Query 963 TCAGTGCAGATAGCTACCCTGAGCAAGAGGAAACCACCAAAGAAGAGTGGTCCCAAGACTTTAAAGATGAAGGG 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2738 TCAGTGCAGATAGCTACCCTGAGCAAGAGGAAACCACCAAAGAAGAGTGGTCCCAAGACTTTAAAGATGAAGGG 2811
Query 1037 TTGGGCATCAGCACCGATAAAGCATATACAGGCAGCATGCTGAGGAAGCGTAACCCCCAGGGTTTAGAG----- 1105
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2812 TTGGGCATCAGCACCGATAAAGCATATACAGGCAGCATGCTGAGGAAGCGTAACCCCCAGGGTTTAGAGTGAAA 2885
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 2886 ACAGCCAGTCTGAAGTATCCATTACTCAAGTCCCAAGATGGGACCACTCAGGGGCAAAGGTCTGACTCTTCCTG 2959
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 2960 GTAGGTGTAACAGATAGTTCACCTGTGAACGAACATCAGCTTACAGATGATGAGGACTTAAGGTTGCAAGAATG 3033
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 3034 AAGATTTCAGACTCCAAGATCCCTTATTCTTTGGGCCTTGAGCAGAATATCCTGTATGCGCTATTTCCCACCAG 3107
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 3108 AGGCAGAGGCCACAGGAGATAGGCCATGGTTCAGGTAGGAAATGCTCTTGGTCACATCAGAACTCTAGATCTGG 3181
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 3182 GGGAATAAACAAACCCGAATTATTACCACACTCTCAAAGTTCTCTTCAATCTGGACTATTTGTATTCCAAAGAA 3255
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 3256 AAATTTAGTGCTTTAGCTATTCAGCAATATTGAGAAAAAACATGAACACATTTATGACTTTGCCTTGACCATTG 3329
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 3330 ACTTTTCTAAAATGTGCTTCCTTTTCCTTTATTTCCCTTTTTTTATACAAAGAAAATAGCCCAAATTTCTCCTC 3403
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 3404 TTAGGTCATTCCTTAACCTCTCAGAGAACCAGTTTCCCCATGAATTGGGAATAATGCTCTATTTACAGGGCTGT 3477
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 3478 TTGGATTAAATAAGATGCTGTTTATAAAGTGTCTGTGCCAGGGCAAAGCATGTGGTAGGTGCTTGGTGACAGCA 3551
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 3552 TGATCCCTGTCACCACTCTGTCAAGTCCAGTGTTGCTGAGATGTCACACCTGACACCCTCTAAGGCTACCCTGA 3625
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 3626 TTGCCAGGAGTGGCCCAGGGCCCTTCTGCAGTCTCCGGGTGCCTTTAGTTATAACCTCTTGTCTGGGTCAGACC 3699
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 3700 ATTAGCTTTCATGTCTGCTTCTAGCTACAACTGTAGCCTCCCTTCCTTTTGCCTTCAAATCTGCCACAGCTGCC 3773
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 3774 CGGCAACAAAAAAAGATTCCTAAGCATCTCGAGGTCCTGTTTAAATGGGTTAGGGTCCAAGCAAGCCCTGAGAC 3847
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 3848 ATCAAGTGGTTGGGTCTTTTATACCTTTTTCATCTCTACAGCCCTGTTCTCTTCCTAAGGCCAGGCCCACAGGG 3921
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 3922 GATACTGAGGAACCACCAGCCCCTTCAGGCGGCACAGCAGACCCTGAAGAGAACTGCTCTAACTTAAGTACCTT 3995
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 3996 CTGACTTCACCATTTTTCCAGCCTCTGGGTGTGGTTCTGATGAACCTTAAACTTGAAAGGCACAGGCCAGAGGA 4069
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 4070 AGGACAGTGTTGACCCACATGTCATTGGTGAGGTTATGATCTCTTTGCTATTATCACCTACTTACCCACCTGAG 4143
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 4144 GCTCCTAGGAAACAATGAATGAAAGGTATAGAAAAAAATTAGGAAGTAAACAGGGCTTTTTTCCCCTTTATGAA 4217
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 4218 AAAAGTACACAGAAGTGTTGAAACGATTCAAGTTTAATTTGTTGATATATGTGTGTACTTAGACAAACACTAAA 4291
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 4292 TTCTACAACATACATAATGTCAACATGGGAAAATACCAAGTTTGTCATTGCACATACCAATAAATAAATACATT 4365
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 4366 TGCTCCAGAATACCAAAGTTTATTCAAAAAGTCAATAAAAGCACAGTTTTGCAAATTTGTCTAAAACGCCAGAT 4439
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 4440 AATCTTGAACAAAAATAAAATGTCTGACCACTCCAAAATAGGAAAAGACAATCTTGTGCAAATAGACATACACA 4513
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 4514 GTCTAGGCATTGTGAAAACTGGCTGTGTTCCCAGCAAGAGATACTGCACCCTCCTGACCGAGCAGTCAGGCTTC 4587
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 4588 CCTTTCCTAGCCATCCTAAGTTGCGTTCTAGGAAACTCTGGATCTCAGCCTCATCTCCAGCTTTGCCTGGACCT 4661
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 4662 TGCTAGGGGGAGGGAGGGACAGGAGCACAGAGGAGGAGAGGAGAGGGATGTGATGTCTTTCTTAGGAAAGAAAA 4735
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 4736 AAAGGCACAGTGATGAGCTATAAAGGTAGTGATGAGAGCTATAAAGGTAGTGATGAAAGCAAGGAATAATTTTC 4809
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 4810 ATTCACCCCAAATCCTACGGCAAGCTTTGACAATGTAACATCTTTATCTTGTGGTTAGGAAAATGGACCTAGAG 4883
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 4884 AGATTATGTGGTTTGCTCAAAATCACATAGCTACTAAGTGCAGTAGTGCTTTCTATAAGACCAACTTGCCTTTC 4957
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 4958 CACTTGGTTGGAAAATTTAAAAACCAAACCTGTCGTAATCTATCTGTTCTGCCCCTCCCGCCTGTATCATGAGA 5031
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 5032 TGACTGAAAATTCCAGGTGGCCATAAACTCAAACAAGAGCCTAGCCCTTGGCTTATTACCGGTGGCTACTACAA 5105
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 5106 ACCTACAGACCAGAGCCCAGGGTAGTATAGAGTCCCAACTCTGGGCCCTGACTGCAGGTCATTCAGGTCCCAGT 5179
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 5180 CACAGTGAAAGCAGACTCATTCAGCTATCTGGAGAAGTGTAATCTGAGGGCCACTTGGCATCCTGAGTTAACAC 5253
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 5254 AGGGATGCCGCAGCTGGGGTAAGGAATTAGAGAAGGGAAGGCCAGTGTTACTGCAGTAAGAGAAAACCAGGAAG 5327
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 5328 TCCATCTAGGAGATGAAATTTGTGCTTGCATAACAGAGCCATGGAAATGGCTATCCCAGCATCTCCCCTCACTG 5401
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 5402 CAGACTCCATTGTAAGCAAAGCATGGACCTTTTTCTTTGAAACCAACCCTGTCACTTGTTAAATTTAGAATTAC 5475
Query 1106 ---------------------------------------------------------------------- 1105
Sbjct 5476 CTCTAAATGCTAAGTTTATTTAAGAGGTAAATGTCCTGCTATTTTCAGAATGGAGAAAAAAAAAAAAAAA 5545
