Nucleotide Global Alignment
Description
- Query:
- TRCN0000488694
- Subject:
- XR_930904.3
- Aligned Length:
- 5543
- Identities:
- 1102
- Gaps:
- 4439
Alignment
Query 1 --------------------------------ATGGCGTACTCCACAGTGCAGAGAGTCGCTCTGGCTTCTGGG 42
||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GGCGTCTGCACCTGCGACCACCGTGAGCAGTCATGGCGTACTCCACAGTGCAGAGAGTCGCTCTGGCTTCTGGG 74
Query 43 CTTGTCCTGGCTCTGTCGCTGCTGCTGCCCAAGGCCTTCCTGTCCCGCGGGAAGCGGCAGGAGCCGCCGCCGAC 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 CTTGTCCTGGCTCTGTCGCTGCTGCTGCCCAAGGCCTTCCTGTCCCGCGGGAAGCGGCAGGAGCCGCCGCCGAC 148
Query 117 ACCTG-------------------------------------------------AAGGAAAATTGGGCCGATTT 141
||||| ||||||||||||||||||||
Sbjct 149 ACCTGAAGAAAACTAAGAGTGAGAACTGACAAAAAGCCATTGGATTTGACGGTTAAGGAAAATTGGGCCGATTT 222
Query 142 CCACCTATGATGCATCATCACCAGGCACACTCAGATGGCCAGACTCCTGGGGCTCGTTTCCAGAGGTCTCACCT 215
||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CCACCTATGATGCATCATCACCAGGCACCCTCAGATGGCCAGACTCCTGGGGCTCGTTTCCAGAGGTCTCACCT 296
Query 216 TGCCGAGGCATTTGCAAAGGCCAAAGGATCAGGTGGAGGTGCTGGAGGAGGAGGTAGTGGAAGAGGTCTGATGG 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TGCCGAGGCATTTGCAAAGGCCAAAGGATCAGGTGGAGGTGCTGGAGGAGGAGGTAGTGGAAGAGGTCTGATGG 370
Query 290 GGCAGATTATTCCAATCTACGGTTTTGGGATTTTTTTATATATACTGTACATTCTATTTA-------------- 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GGCAGATTATTCCAATCTACGGTTTTGGGATTTTTTTATATATACTGTACATTCTATTTAAGGTAAGTAGAATC 444
Query 350 -------------------------------------------------------------------------- 349
Sbjct 445 ATCCTAATCATATTACATCAATGAAAATCTAATATGGCAATAAAAATCATTGTCTACATTAAAACTTCTTATAG 518
Query 350 -------------------------------------------------------------------------- 349
Sbjct 519 TTCATAAAATTATTTCAAATCCATCATCTCTTTAAATCCTGCCTCCTCTTCATGAGGTACTTAGGATAGCCATT 592
Query 350 -------------------------------------------------------------------------- 349
Sbjct 593 ATTTCAGTTTCACATAAGAAATGTTTACTCAATGTTTAAGTGTTTTGCCCCAAAATTCACAACTAACAAGGCAG 666
Query 350 -------------------------------------------------------------------------- 349
Sbjct 667 AACTAGGACTTGAACATGGATCTTTTGGTTCTTAATCCAGTGAGTGATACAATTCAATGCACTCCCCTGCCAAA 740
Query 350 -------------------------------------------------------------------------- 349
Sbjct 741 AAAAAAAAAAAAAAAAAAAAAATTAACATCTTTACAGGCCGAAAAGGAATAAAGATTTTCTAAGAAGAGCTTTT 814
Query 350 -------------------------------------------------------------------------- 349
Sbjct 815 ATTATTGGGATTGGCACAGTGATTTCCAAATAGCCATTGTAAGGCCAAATAATGACACCACTTTATCCTGCTTG 888
Query 350 -------------------------------------------------------------------------- 349
Sbjct 889 TTTCTCCACAGGAATTTGAGATGCTGTTTTTAATATTATCTCCAATAATTCTCCTGAGACAGAACTGTCCCTCC 962
Query 350 -------------------------------------------------------------------------- 349
Sbjct 963 TGAAATTAAGCCTGATATTTCCTAGCTCTGGGGAGACATGGGTGTAGGTTCTTTAAAGCAGACCCCCAGTTGAG 1036
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1037 TTCCACCTCCAGGCAGGCCTTTGCAGGCCCCTGGCCCCTGTACTGTGAATTAGAGGCAGAAGACTCACTTTGCC 1110
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1111 CTCCTGTCTAGAGTAAGCTTAAATAAGATGAGTTCTTTCTCGCCCAGGAATTCTGCAGGCAGTCTGAGTTGAGT 1184
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1185 CTGTAAGAATGCCCATAGGGTGCCACACATCCCTTTTAGATGAGCATGAGCAAGGAAGATGACCTGTAGGGAGA 1258
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1259 TTTTTTTTCCCTTGTGTTAGAAATGCTTGTTCTCTGGTGCCATAAAGAAGCAGCACTTGGACGTACATTTAATT 1332
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1333 TCCTCAGCAAGGCCATTTTTACTTTCTGCAGAAAGGGTACACTCACCAGCGGTTTTGCCGTGAGAGTACACCGA 1406
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1407 ACAAAGGAGACAGGGTCATTTATAACCTGACGCATCCACCTTACTGCTGTGTCCGGTTTCCATTGGCTGGAACG 1480
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1481 GGACCTCACATTCTGTATTTGTGCTGATTGGCTAGCGACTTAGAACTTTTTAAAAGAGGCAAAGGCAGAGGAGA 1554
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1555 ACAAAGGAAGGAGGAACTAACTTGTGGAATGCTGAGAAAGGTAAAAACACCTTCATATAAGGAAGAGGAACAGG 1628
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1629 CTATGACCTCATGCTTGCTTTGACAAGTATAAGCATGCCAGGGCAAATATTTAGGCTAAACTGTGGGAGCTAAG 1702
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1703 AACAGTTGATTTCTTTATTATGGCTAGCAGATATCTAAGCATGTTAGCACAGGTTCTTGAATAAATTTTGCTTC 1776
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1777 TAAGAGAAGTTACTATTCCTAATTATATGGGGAGTAAAGTCTCTTTGAAGAGGAATCTCTACTTTACTTTTTAC 1850
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1851 ACTTGTGCTTTGATAATTTTTTACTTGGAAACCTCATCTTTTGGCGTTTTTTTTTTTGAGCTATTTCTCTAGTG 1924
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1925 TTGCTATTTGATTTAATTTCTGACCTTCATTTTTGTTTCCCAACCTTTTTTTTTTGTTTGATATGAGGGGTTCC 1998
Query 350 ---------------------------------------------------AGCTCTCAAAGGGGAAAACAACT 372
|||||||||||||||||||||||
Sbjct 1999 GTGACTGAGGTTCTGAGCTGCTGTTGATGTGCTATACCTCCTTCAATTCTCAGCTCTCAAAGGGGAAAACAACT 2072
Query 373 GCAGAGGATGGGAAATGCTATACTGCCATGCCTGGAAACACCCACAGGAAAATTACCAGTTTTGAGCTTGCTCA 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 GCAGAGGATGGGAAATGCTATACTGCCATGCCTGGAAACACCCACAGGAAAATTACCAGTTTTGAGCTTGCTCA 2146
Query 447 ACTGCAAGAAAAACTGAAGGAGACAGAAGCAGCCATGGAAAAATTATTCAACAGAGTGGGACCTAATGGTGAG- 519
||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||
Sbjct 2147 ACTGCAAGAAAAACTGAAGGAGACAGAAGCAGCCATGGAAAAATTAATCAACAGAGTGGGACCTAATGGTGAGA 2220
Query 520 ------------------------------------------------------------------------AG 521
||
Sbjct 2221 GATCAGAATGCCCTGCGTACAGTCTGGAAAAGTAACATGTGCCGCCTGAAGAGACAAGAGTTTGTGATAAGCAG 2294
Query 522 AGCACAGACTGTGACTTCTGACCAAGAGAAACGGTTGCTACATCAGCTCCGAGAAATCACCAGGGTCATGAAAG 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295 AGCACAGACTGTGACTTCTGACCAAGAGAAACGGTTGCTACATCAGCTCCGAGAAATCACCAGGGTCATGAAAG 2368
Query 596 AAGGAAAATTCATTGACAGATTTTCTCCAGAGAAAGAAGCTGAGGAGGCCCCTTACATGGAGGACTGGGAAGGT 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369 AAGGAAAATTCATTGACAGATTTTCTCCAGAGAAAGAAGCTGAGGAGGCCCCTTACATGGAGGACTGGGAAGGT 2442
Query 670 TACCCTGAAGAGACTTACCCAATTTATGACCTTTCAGACTGTATCAAGCGTAGGCAAGAAACAATCTTGGTGGA 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443 TACCCTGAAGAGACTTACCCAATTTATGACCTTTCAGACTGTATCAAGCGTAGGCAAGAAACAATCTTGGTGGA 2516
Query 744 TTACCCTGACCCAAAAGAACTTTTCTGCTGAAGAAATAGCTGAAAGAATGGGAATGATAGAAGAGGAAGAATCA 817
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517 TTACCCTGACCCAAAAGAAC-TTTCTGCTGAAGAAATAGCTGAAAGAATGGGAATGATAGAAGAGGAAGAATCA 2589
Query 818 GATCATTTGGGTTGGGAAAGTCTGCCCACTGACCCCAGAGCCCAGGAAGATAATTCTGTTACCTCGTGTGATCC 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2590 GATCATTTGGGTTGGGAAAGTCTGCCCACTGACCCCAGAGCCCAGGAAGATAATTCTGTTACCTCGTGTGATCC 2663
Query 892 AAAGCCAGAAACATGTTCCTGCTGTTTTCATGAAGACGAGGATCCTGCTGTCTTGGCAGAGAATGCTGGATTCA 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2664 AAAGCCAGAAACATGTTCCTGCTGTTTTCATGAAGACGAGGATCCTGCTGTCTTGGCAGAGAATGCTGGATTCA 2737
Query 966 GTGCAGATAGCTACCCTGAGCAAGAGGAAACCACCAAAGAAGAGTGGTCCCAAGACTTTAAAGATGAAGGGTTG 1039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2738 GTGCAGATAGCTACCCTGAGCAAGAGGAAACCACCAAAGAAGAGTGGTCCCAAGACTTTAAAGATGAAGGGTTG 2811
Query 1040 GGCATCAGCACCGATAAAGCATATACAGGCAGCATGCTGAGGAAGCGTAACCCCCAGGGTTTAGAG-------- 1105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2812 GGCATCAGCACCGATAAAGCATATACAGGCAGCATGCTGAGGAAGCGTAACCCCCAGGGTTTAGAGTGAAAACA 2885
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 2886 GCCAGTCTGAAGTATCCATTACTCAAGTCCCAAGATGGGACCACTCAGGGGCAAAGGTCTGACTCTTCCTGGTA 2959
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 2960 GGTGTAACAGATAGTTCACCTGTGAACGAACATCAGCTTACAGATGATGAGGACTTAAGGTTGCAAGAATGAAG 3033
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 3034 ATTTCAGACTCCAAGATCCCTTATTCTTTGGGCCTTGAGCAGAATATCCTGTATGCGCTATTTCCCACCAGAGG 3107
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 3108 CAGAGGCCACAGGAGATAGGCCATGGTTCAGGTAGGAAATGCTCTTGGTCACATCAGAACTCTAGATCTGGGGG 3181
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 3182 AATAAACAAACCCGAATTATTACCACACTCTCAAAGTTCTCTTCAATCTGGACTATTTGTATTCCAAAGAAAAA 3255
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 3256 TTTAGTGCTTTAGCTATTCAGCAATATTGAGAAAAAACATGAACACATTTATGACTTTGCCTTGACCATTGACT 3329
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 3330 TTTCTAAAATGTGCTTCCTTTTCCTTTATTTCCCTTTTTTTATACAAAGAAAATAGCCCAAATTTCTCCTCTTA 3403
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 3404 GGTCATTCCTTAACCTCTCAGAGAACCAGTTTCCCCATGAATTGGGAATAATGCTCTATTTACAGGGCTGTTTG 3477
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 3478 GATTAAATAAGATGCTGTTTATAAAGTGTCTGTGCCAGGGCAAAGCATGTGGTAGGTGCTTGGTGACAGCATGA 3551
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 3552 TCCCTGTCACCACTCTGTCAAGTCCAGTGTTGCTGAGATGTCACACCTGACACCCTCTAAGGCTACCCTGATTG 3625
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 3626 CCAGGAGTGGCCCAGGGCCCTTCTGCAGTCTCCGGGTGCCTTTAGTTATAACCTCTTGTCTGGGTCAGACCATT 3699
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 3700 AGCTTTCATGTCTGCTTCTAGCTACAACTGTAGCCTCCCTTCCTTTTGCCTTCAAATCTGCCACAGCTGCCCGG 3773
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 3774 CAACAAAAAAAGATTCCTAAGCATCTCGAGGTCCTGTTTAAATGGGTTAGGGTCCAAGCAAGCCCTGAGACATC 3847
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 3848 AAGTGGTTGGGTCTTTTATACCTTTTTCATCTCTACAGCCCTGTTCTCTTCCTAAGGCCAGGCCCACAGGGGAT 3921
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 3922 ACTGAGGAACCACCAGCCCCTTCAGGCGGCACAGCAGACCCTGAAGAGAACTGCTCTAACTTAAGTACCTTCTG 3995
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 3996 ACTTCACCATTTTTCCAGCCTCTGGGTGTGGTTCTGATGAACCTTAAACTTGAAAGGCACAGGCCAGAGGAAGG 4069
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 4070 ACAGTGTTGACCCACATGTCATTGGTGAGGTTATGATCTCTTTGCTATTATCACCTACTTACCCACCTGAGGCT 4143
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 4144 CCTAGGAAACAATGAATGAAAGGTATAGAAAAAAATTAGGAAGTAAACAGGGCTTTTTTCCCCTTTATGAAAAA 4217
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 4218 AGTACACAGAAGTGTTGAAACGATTCAAGTTTAATTTGTTGATATATGTGTGTACTTAGACAAACACTAAATTC 4291
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 4292 TACAACATACATAATGTCAACATGGGAAAATACCAAGTTTGTCATTGCACATACCAATAAATAAATACATTTGC 4365
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 4366 TCCAGAATACCAAAGTTTATTCAAAAAGTCAATAAAAGCACAGTTTTGCAAATTTGTCTAAAACGCCAGATAAT 4439
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 4440 CTTGAACAAAAATAAAATGTCTGACCACTCCAAAATAGGAAAAGACAATCTTGTGCAAATAGACATACACAGTC 4513
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 4514 TAGGCATTGTGAAAACTGGCTGTGTTCCCAGCAAGAGATACTGCACCCTCCTGACCGAGCAGTCAGGCTTCCCT 4587
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 4588 TTCCTAGCCATCCTAAGTTGCGTTCTAGGAAACTCTGGATCTCAGCCTCATCTCCAGCTTTGCCTGGACCTTGC 4661
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 4662 TAGGGGGAGGGAGGGACAGGAGCACAGAGGAGGAGAGGAGAGGGATGTGATGTCTTTCTTAGGAAAGAAAAAAA 4735
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 4736 GGCACAGTGATGAGCTATAAAGGTAGTGATGAGAGCTATAAAGGTAGTGATGAAAGCAAGGAATAATTTTCATT 4809
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 4810 CACCCCAAATCCTACGGCAAGCTTTGACAATGTAACATCTTTATCTTGTGGTTAGGAAAATGGACCTAGAGAGA 4883
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 4884 TTATGTGGTTTGCTCAAAATCACATAGCTACTAAGTGCAGTAGTGCTTTCTATAAGACCAACTTGCCTTTCCAC 4957
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 4958 TTGGTTGGAAAATTTAAAAACCAAACCTGTCGTAATCTATCTGTTCTGCCCCTCCCGCCTGTATCATGAGATGA 5031
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 5032 CTGAAAATTCCAGGTGGCCATAAACTCAAACAAGAGCCTAGCCCTTGGCTTATTACCGGTGGCTACTACAAACC 5105
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 5106 TACAGACCAGAGCCCAGGGTAGTATAGAGTCCCAACTCTGGGCCCTGACTGCAGGTCATTCAGGTCCCAGTCAC 5179
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 5180 AGTGAAAGCAGACTCATTCAGCTATCTGGAGAAGTGTAATCTGAGGGCCACTTGGCATCCTGAGTTAACACAGG 5253
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 5254 GATGCCGCAGCTGGGGTAAGGAATTAGAGAAGGGAAGGCCAGTGTTACTGCAGTAAGAGAAAACCAGGAAGTCC 5327
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 5328 ATCTAGGAGATGAAATTTGTGCTTGCATAACAGAGCCATGGAAATGGCTATCCCAGCATCTCCCCTCACTGCAG 5401
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 5402 ACTCCATTGTAAGCAAAGCATGGACCTTTTTCTTTGAAACCAACCCTGTCACTTGTTAAATTTAGAATTACCTC 5475
Query 1106 ------------------------------------------------------------------- 1105
Sbjct 5476 TAAATGCTAAGTTTATTTAAGAGGTAAATGTCCTGCTATTTTCAGAATGGAGAAAAAAAAAAAAAAA 5542
