Nucleotide Global Alignment
Description
- Query:
- TRCN0000488694
- Subject:
- XR_930905.3
- Aligned Length:
- 5606
- Identities:
- 1102
- Gaps:
- 4502
Alignment
Query 1 --------------------------------ATGGCGTACTCCACAGTGCAGAGAGTCGCTCTGGCTTCTGGG 42
||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GGCGTCTGCACCTGCGACCACCGTGAGCAGTCATGGCGTACTCCACAGTGCAGAGAGTCGCTCTGGCTTCTGGG 74
Query 43 CTTGTCCTGGCTCTGTCGCTGCTGCTGCCCAAGGCCTTCCTGTCCCGCGGGAAGCGGCAGGAGCCGCCGCCGAC 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 CTTGTCCTGGCTCTGTCGCTGCTGCTGCCCAAGGCCTTCCTGTCCCGCGGGAAGCGGCAGGAGCCGCCGCCGAC 148
Query 117 ACCTG-------------------------------------------------AAGGAAAATTGGGCCGATTT 141
||||| ||||||||||||||||||||
Sbjct 149 ACCTGAAGAAAACTAAGAGTGAGAACTGACAAAAAGCCATTGGATTTGACGGTTAAGGAAAATTGGGCCGATTT 222
Query 142 CCACCTATGATGCATCATCACCAGGCACACTCAGATGGCCAGACTCCTGGGGCTCGTTTCCAGAGGTCTCACCT 215
||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CCACCTATGATGCATCATCACCAGGCACCCTCAGATGGCCAGACTCCTGGGGCTCGTTTCCAGAGGTCTCACCT 296
Query 216 TGCCGAGGCATTTGCAAAGGCCAAAGGATCAGGTGGAGGTGCTGGAGGAGGAGGTAGTGGAAGAGGTCTGATGG 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TGCCGAGGCATTTGCAAAGGCCAAAGGATCAGGTGGAGGTGCTGGAGGAGGAGGTAGTGGAAGAGGTCTGATGG 370
Query 290 GGCAGATTATTCCAATCTACGGTTTTGGGATTTTTTTATATATACTGTACATTCTATTTA-------------- 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GGCAGATTATTCCAATCTACGGTTTTGGGATTTTTTTATATATACTGTACATTCTATTTAAGGTAAGTAGAATC 444
Query 350 -------------------------------------------------------------------------- 349
Sbjct 445 ATCCTAATCATATTACATCAATGAAAATCTAATATGGCAATAAAAATCATTGTCTACATTAAAACTTCTTATAG 518
Query 350 -------------------------------------------------------------------------- 349
Sbjct 519 TTCATAAAATTATTTCAAATCCATCATCTCTTTAAATCCTGCCTCCTCTTCATGAGGTACTTAGGATAGCCATT 592
Query 350 -------------------------------------------------------------------------- 349
Sbjct 593 ATTTCAGTTTCACATAAGAAATGTTTACTCAATGTTTAAGTGTTTTGCCCCAAAATTCACAACTAACAAGGCAG 666
Query 350 -------------------------------------------------------------------------- 349
Sbjct 667 AACTAGGACTTGAACATGGATCTTTTGGTTCTTAATCCAGTGAGTGATACAATTCAATGCACTCCCCTGCCAAA 740
Query 350 -------------------------------------------------------------------------- 349
Sbjct 741 AAAAAAAAAAAAAAAAAAAAAATTAACATCTTTACAGGCCGAAAAGGAATAAAGATTTTCTAAGAAGAGCTTTT 814
Query 350 -------------------------------------------------------------------------- 349
Sbjct 815 ATTATTGGGATTGGCACAGTGATTTCCAAATAGCCATTGTAAGGCCAAATAATGACACCACTTTATCCTGCTTG 888
Query 350 -------------------------------------------------------------------------- 349
Sbjct 889 TTTCTCCACAGGAATTTGAGATGCTGTTTTTAATATTATCTCCAATAATTCTCCTGAGACAGAACTGTCCCTCC 962
Query 350 -------------------------------------------------------------------------- 349
Sbjct 963 TGAAATTAAGCCTGATATTTCCTAGCTCTGGGGAGACATGGGTGTAGGTTCTTTAAAGCAGACCCCCAGTTGAG 1036
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1037 TTCCACCTCCAGGCAGGCCTTTGCAGGCCCCTGGCCCCTGTACTGTGAATTAGAGGCAGAAGACTCACTTTGCC 1110
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1111 CTCCTGTCTAGAGTAAGCTTAAATAAGATGAGTTCTTTCTCGCCCAGGAATTCTGCAGGCAGTCTGAGTTGAGT 1184
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1185 CTGTAAGAATGCCCATAGGGTGCCACACATCCCTTTTAGATGAGCATGAGCAAGGAAGATGACCTGTAGGGAGA 1258
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1259 TTTTTTTTCCCTTGTGTTAGAAATGCTTGTTCTCTGGTGCCATAAAGAAGCAGCACTTGGACGTACATTTAATT 1332
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1333 TCCTCAGCAAGGCCATTTTTACTTTCTGCAGAAAGGGTACACTCACCAGCGGTTTTGCCGTGAGAGTACACCGA 1406
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1407 ACAAAGGAGACAGGGTCATTTATAACCTGACGCATCCACCTTACTGCTGTGTCCGGTTTCCATTGGCTGGAACG 1480
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1481 GGACCTCACATTCTGTATTTGTGCTGATTGGCTAGCGACTTAGAACTTTTTAAAAGAGGCAAAGGCAGAGGAGA 1554
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1555 ACAAAGGAAGGAGGAACTAACTTGTGGAATGCTGAGAAAGGTAAAAACACCTTCATATAAGGAAGAGGAACAGG 1628
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1629 CTATGACCTCATGCTTGCTTTGACAAGTATAAGCATGCCAGGGCAAATATTTAGGCTAAACTGTGGGAGCTAAG 1702
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1703 AACAGTTGATTTCTTTATTATGGCTAGCAGATATCTAAGCATGTTAGCACAGGTTCTTGAATAAATTTTGCTTC 1776
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1777 TAAGAGAAGTTACTATTCCTAATTATATGGGGAGTAAAGTCTCTTTGAAGAGGAATCTCTACTTTACTTTTTAC 1850
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1851 ACTTGTGCTTTGATAATTTTTTACTTGGAAACCTCATCTTTTGGCGTTTTTTTTTTTGAGCTATTTCTCTAGTG 1924
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1925 TTGCTATTTGATTTAATTTCTGACCTTCATTTTTGTTTCCCAACCTTTTTTTTTTGTTTGATATGAGGGGTTCC 1998
Query 350 ---------------------------------------------------AGCTCTCAAAGGGGAAAACAACT 372
|||||||||||||||||||||||
Sbjct 1999 GTGACTGAGGTTCTGAGCTGCTGTTGATGTGCTATACCTCCTTCAATTCTCAGCTCTCAAAGGGGAAAACAACT 2072
Query 373 GCAGAGGATGGGAAATGCTATACTGCCATGCCTGGAAACACCCACAGGAAAATTACCAGTTTTGAGCTTGCTCA 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 GCAGAGGATGGGAAATGCTATACTGCCATGCCTGGAAACACCCACAGGAAAATTACCAGTTTTGAGCTTGCTCA 2146
Query 447 ACTGCAAGAAAAACTGAAGGAGACAGAAGCAGCCATGGAAAAATTATTCAACAGAGTGGGACCTAATGGTGAG- 519
||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||
Sbjct 2147 ACTGCAAGAAAAACTGAAGGAGACAGAAGCAGCCATGGAAAAATTAATCAACAGAGTGGGACCTAATGGTGAGA 2220
Query 520 -------------------------------------------------------------------------- 519
Sbjct 2221 GGATAAGGGCTTCTGATTTCCCATGACTTAGGAAACAGAATTAAGACTGTTTCATTCATTGAAGATCAGAATGC 2294
Query 520 -------------------------------------------------------------AGAGCACAGACTG 532
|||||||||||||
Sbjct 2295 CCTGCGTACAGTCTGGAAAAGTAACATGTGCCGCCTGAAGAGACAAGAGTTTGTGATAAGCAGAGCACAGACTG 2368
Query 533 TGACTTCTGACCAAGAGAAACGGTTGCTACATCAGCTCCGAGAAATCACCAGGGTCATGAAAGAAGGAAAATTC 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369 TGACTTCTGACCAAGAGAAACGGTTGCTACATCAGCTCCGAGAAATCACCAGGGTCATGAAAGAAGGAAAATTC 2442
Query 607 ATTGACAGATTTTCTCCAGAGAAAGAAGCTGAGGAGGCCCCTTACATGGAGGACTGGGAAGGTTACCCTGAAGA 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443 ATTGACAGATTTTCTCCAGAGAAAGAAGCTGAGGAGGCCCCTTACATGGAGGACTGGGAAGGTTACCCTGAAGA 2516
Query 681 GACTTACCCAATTTATGACCTTTCAGACTGTATCAAGCGTAGGCAAGAAACAATCTTGGTGGATTACCCTGACC 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517 GACTTACCCAATTTATGACCTTTCAGACTGTATCAAGCGTAGGCAAGAAACAATCTTGGTGGATTACCCTGACC 2590
Query 755 CAAAAGAACTTTTCTGCTGAAGAAATAGCTGAAAGAATGGGAATGATAGAAGAGGAAGAATCAGATCATTTGGG 828
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591 CAAAAGAAC-TTTCTGCTGAAGAAATAGCTGAAAGAATGGGAATGATAGAAGAGGAAGAATCAGATCATTTGGG 2663
Query 829 TTGGGAAAGTCTGCCCACTGACCCCAGAGCCCAGGAAGATAATTCTGTTACCTCGTGTGATCCAAAGCCAGAAA 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2664 TTGGGAAAGTCTGCCCACTGACCCCAGAGCCCAGGAAGATAATTCTGTTACCTCGTGTGATCCAAAGCCAGAAA 2737
Query 903 CATGTTCCTGCTGTTTTCATGAAGACGAGGATCCTGCTGTCTTGGCAGAGAATGCTGGATTCAGTGCAGATAGC 976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2738 CATGTTCCTGCTGTTTTCATGAAGACGAGGATCCTGCTGTCTTGGCAGAGAATGCTGGATTCAGTGCAGATAGC 2811
Query 977 TACCCTGAGCAAGAGGAAACCACCAAAGAAGAGTGGTCCCAAGACTTTAAAGATGAAGGGTTGGGCATCAGCAC 1050
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2812 TACCCTGAGCAAGAGGAAACCACCAAAGAAGAGTGGTCCCAAGACTTTAAAGATGAAGGGTTGGGCATCAGCAC 2885
Query 1051 CGATAAAGCATATACAGGCAGCATGCTGAGGAAGCGTAACCCCCAGGGTTTAGAG------------------- 1105
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2886 CGATAAAGCATATACAGGCAGCATGCTGAGGAAGCGTAACCCCCAGGGTTTAGAGTGAAAACAGCCAGTCTGAA 2959
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 2960 GTATCCATTACTCAAGTCCCAAGATGGGACCACTCAGGGGCAAAGGTCTGACTCTTCCTGGTAGGTGTAACAGA 3033
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 3034 TAGTTCACCTGTGAACGAACATCAGCTTACAGATGATGAGGACTTAAGGTTGCAAGAATGAAGATTTCAGACTC 3107
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 3108 CAAGATCCCTTATTCTTTGGGCCTTGAGCAGAATATCCTGTATGCGCTATTTCCCACCAGAGGCAGAGGCCACA 3181
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 3182 GGAGATAGGCCATGGTTCAGGTAGGAAATGCTCTTGGTCACATCAGAACTCTAGATCTGGGGGAATAAACAAAC 3255
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 3256 CCGAATTATTACCACACTCTCAAAGTTCTCTTCAATCTGGACTATTTGTATTCCAAAGAAAAATTTAGTGCTTT 3329
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 3330 AGCTATTCAGCAATATTGAGAAAAAACATGAACACATTTATGACTTTGCCTTGACCATTGACTTTTCTAAAATG 3403
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 3404 TGCTTCCTTTTCCTTTATTTCCCTTTTTTTATACAAAGAAAATAGCCCAAATTTCTCCTCTTAGGTCATTCCTT 3477
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 3478 AACCTCTCAGAGAACCAGTTTCCCCATGAATTGGGAATAATGCTCTATTTACAGGGCTGTTTGGATTAAATAAG 3551
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 3552 ATGCTGTTTATAAAGTGTCTGTGCCAGGGCAAAGCATGTGGTAGGTGCTTGGTGACAGCATGATCCCTGTCACC 3625
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 3626 ACTCTGTCAAGTCCAGTGTTGCTGAGATGTCACACCTGACACCCTCTAAGGCTACCCTGATTGCCAGGAGTGGC 3699
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 3700 CCAGGGCCCTTCTGCAGTCTCCGGGTGCCTTTAGTTATAACCTCTTGTCTGGGTCAGACCATTAGCTTTCATGT 3773
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 3774 CTGCTTCTAGCTACAACTGTAGCCTCCCTTCCTTTTGCCTTCAAATCTGCCACAGCTGCCCGGCAACAAAAAAA 3847
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 3848 GATTCCTAAGCATCTCGAGGTCCTGTTTAAATGGGTTAGGGTCCAAGCAAGCCCTGAGACATCAAGTGGTTGGG 3921
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 3922 TCTTTTATACCTTTTTCATCTCTACAGCCCTGTTCTCTTCCTAAGGCCAGGCCCACAGGGGATACTGAGGAACC 3995
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 3996 ACCAGCCCCTTCAGGCGGCACAGCAGACCCTGAAGAGAACTGCTCTAACTTAAGTACCTTCTGACTTCACCATT 4069
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 4070 TTTCCAGCCTCTGGGTGTGGTTCTGATGAACCTTAAACTTGAAAGGCACAGGCCAGAGGAAGGACAGTGTTGAC 4143
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 4144 CCACATGTCATTGGTGAGGTTATGATCTCTTTGCTATTATCACCTACTTACCCACCTGAGGCTCCTAGGAAACA 4217
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 4218 ATGAATGAAAGGTATAGAAAAAAATTAGGAAGTAAACAGGGCTTTTTTCCCCTTTATGAAAAAAGTACACAGAA 4291
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 4292 GTGTTGAAACGATTCAAGTTTAATTTGTTGATATATGTGTGTACTTAGACAAACACTAAATTCTACAACATACA 4365
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 4366 TAATGTCAACATGGGAAAATACCAAGTTTGTCATTGCACATACCAATAAATAAATACATTTGCTCCAGAATACC 4439
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 4440 AAAGTTTATTCAAAAAGTCAATAAAAGCACAGTTTTGCAAATTTGTCTAAAACGCCAGATAATCTTGAACAAAA 4513
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 4514 ATAAAATGTCTGACCACTCCAAAATAGGAAAAGACAATCTTGTGCAAATAGACATACACAGTCTAGGCATTGTG 4587
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 4588 AAAACTGGCTGTGTTCCCAGCAAGAGATACTGCACCCTCCTGACCGAGCAGTCAGGCTTCCCTTTCCTAGCCAT 4661
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 4662 CCTAAGTTGCGTTCTAGGAAACTCTGGATCTCAGCCTCATCTCCAGCTTTGCCTGGACCTTGCTAGGGGGAGGG 4735
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 4736 AGGGACAGGAGCACAGAGGAGGAGAGGAGAGGGATGTGATGTCTTTCTTAGGAAAGAAAAAAAGGCACAGTGAT 4809
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 4810 GAGCTATAAAGGTAGTGATGAGAGCTATAAAGGTAGTGATGAAAGCAAGGAATAATTTTCATTCACCCCAAATC 4883
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 4884 CTACGGCAAGCTTTGACAATGTAACATCTTTATCTTGTGGTTAGGAAAATGGACCTAGAGAGATTATGTGGTTT 4957
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 4958 GCTCAAAATCACATAGCTACTAAGTGCAGTAGTGCTTTCTATAAGACCAACTTGCCTTTCCACTTGGTTGGAAA 5031
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 5032 ATTTAAAAACCAAACCTGTCGTAATCTATCTGTTCTGCCCCTCCCGCCTGTATCATGAGATGACTGAAAATTCC 5105
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 5106 AGGTGGCCATAAACTCAAACAAGAGCCTAGCCCTTGGCTTATTACCGGTGGCTACTACAAACCTACAGACCAGA 5179
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 5180 GCCCAGGGTAGTATAGAGTCCCAACTCTGGGCCCTGACTGCAGGTCATTCAGGTCCCAGTCACAGTGAAAGCAG 5253
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 5254 ACTCATTCAGCTATCTGGAGAAGTGTAATCTGAGGGCCACTTGGCATCCTGAGTTAACACAGGGATGCCGCAGC 5327
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 5328 TGGGGTAAGGAATTAGAGAAGGGAAGGCCAGTGTTACTGCAGTAAGAGAAAACCAGGAAGTCCATCTAGGAGAT 5401
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 5402 GAAATTTGTGCTTGCATAACAGAGCCATGGAAATGGCTATCCCAGCATCTCCCCTCACTGCAGACTCCATTGTA 5475
Query 1106 -------------------------------------------------------------------------- 1105
Sbjct 5476 AGCAAAGCATGGACCTTTTTCTTTGAAACCAACCCTGTCACTTGTTAAATTTAGAATTACCTCTAAATGCTAAG 5549
Query 1106 -------------------------------------------------------- 1105
Sbjct 5550 TTTATTTAAGAGGTAAATGTCCTGCTATTTTCAGAATGGAGAAAAAAAAAAAAAAA 5605
