Nucleotide Global Alignment
Description
- Query:
- TRCN0000488840
- Subject:
- XR_001751293.2
- Aligned Length:
- 3188
- Identities:
- 1689
- Gaps:
- 1420
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GAGGGAGCCGAGGAAGACGCTCCGATAACCCGTGCGTTTCGTAAGGCTCGGAGCACTTGTACATTTCTGCAGCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCGCGGCGAGCCATTCGCGGCGGCTGCTGCAGCTCCTACTGCATCTTCCTTCTCTTCCTTTCCTCGGGCTCCGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GTGTGTGTATGTGTGAGAGTGAGTGTGTGTGTTTTGCAGGTGCGTGGTGTGTCCGTTTTAATTCTGCCCAGTAG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GTGGGACTTGGTGACTTTAGCACCATTTTTTCCTTTTCCTTTTTTTTTTTTGCCTCCCCACCGTCTGTTGCAAC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CCTGCAAAGTCTCGGAGTCGGAGAGCGCGCCTCGCTTCCAGAGCCCCCGGACCCGGCGAGTCAGCGATCGCCGA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GCCGGCCACCATGCCCGGCAGACCGCGCCACTAGGCGCTCCTCGCGGCTCCCACCCGGCGGCGGCGGCGGCGGC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GGCGGCGTCCGCGATGGTTTCAGACGCTGAAGGATTTTGCATCTGATCGCTCGGCGTTTCAAAGGCAGAGGCCC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CCCCTCCCCCTTCCCCCCTCCCTCGCCGTCTTTGTTTCCTTCCCCCCCTGCTCTCCCCACTCCCCCCACCCCAC 592
Query 1 ----------------------------------------------ATGGATGTCTCTCTTTGCCCAGCCAAGT 28
||||||||||||||||||||||||||||
Sbjct 593 CCCCCTCTCCTCTCCTCCTCCTCTTTTTTAGAAGCAGCGATCGGAGATGGATGTCTCTCTTTGCCCAGCCAAGT 666
Query 29 GTAGTTTCTGGCGGATTTTCTTGCTGGGAAGCGTCTGGCTGGACTATGTGGGCTCCGTGCTGGCTTGCCCTGCA 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GTAGTTTCTGGCGGATTTTCTTGCTGGGAAGCGTCTGGCTGGACTATGTGGGCTCCGTGCTGGCTTGCCCTGCA 740
Query 103 AATTGTGTCTGCAGCAAGACTGAGATCAATTGCCGGCGGCCGGACGATGGGAACCTCTTCCCCCTCCTGGAAGG 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AATTGTGTCTGCAGCAAGACTGAGATCAATTGCCGGCGGCCGGACGATGGGAACCTCTTCCCCCTCCTGGAAGG 814
Query 177 GCAGGATTCAGGGAACAGCAATGGGAACGCCAGTATCAACATCACGGACATCTCAAGGAATATCACTTCCATAC 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 GCAGGATTCAGGGAACAGCAATGGGAACGCCAGTATCAACATCACGGACATCTCAAGGAATATCACTTCCATAC 888
Query 251 ACATAGAGAACTGGCGCAGTCTTCACACGCTCAACGCCGTGGACATGGAGCTCTACACCGGACTTCAAAAGCTG 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 ACATAGAGAACTGGCGCAGTCTTCACACGCTCAACGCCGTGGACATGGAGCTCTACACCGGACTTCAAAAGCTG 962
Query 325 ACCATCAAGAACTCAGGACTTCGGAGCATTCAGCCCAGAGCCTTTGCCAAGAACCCCCATTTGCGTTATATAAA 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 ACCATCAAGAACTCAGGACTTCGGAGCATTCAGCCCAGAGCCTTTGCCAAGAACCCCCATTTGCGTTATATAAA 1036
Query 399 CCTGTCAAGTAACCGGCTCACCACACTCTCGTGGCAGCTCTTCCAGACGCTGAGTCTTCGGGAATTGCAGTTGG 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CCTGTCAAGTAACCGGCTCACCACACTCTCGTGGCAGCTCTTCCAGACGCTGAGTCTTCGGGAATTGCAGTTGG 1110
Query 473 AGCAGAACTTTTTCAACTGCAGCTGTGACATCCGCTGGATGCAGCTCTGGCAGGAGCAGGGGGAGGCCAAGCTC 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 AGCAGAACTTTTTCAACTGCAGCTGTGACATCCGCTGGATGCAGCTCTGGCAGGAGCAGGGGGAGGCCAAGCTC 1184
Query 547 AACAGCCAGAACCTCTACTGCATCAACGCTGATGGCTCCCAGCTTCCTCTCTTCCGCATGAACATCAGTCAGTG 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 AACAGCCAGAACCTCTACTGCATCAACGCTGATGGCTCCCAGCTTCCTCTCTTCCGCATGAACATCAGTCAGTG 1258
Query 621 TGACCTTCCTGAGATCAGCGTGAGCCACGTCAACCTGACCGTACGAGAGGGTGACAATGCTGTTATCACTTGCA 694
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||
Sbjct 1259 TGACCTTCCTGAGATCAGCGTGAGCCACGTCAACCTGACCGTACGAGAGGGTGACAACGCTGTTATCACTTGCA 1332
Query 695 ATGGCTCTGGATCACCCCTTCCTGATGTGGACTGGATAGTCACTGGGCTGCAGTCCATCAACACTCACCAGACC 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 ATGGCTCTGGATCACCCCTTCCTGATGTGGACTGGATAGTCACTGGGCTGCAGTCCATCAACACTCACCAGACC 1406
Query 769 AATCTGAACTGGACCAATGTTCATGCCATCAACTTGACGCTGGTGAATGTGACGAGTGAGGACAATGGCTTCAC 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 AATCTGAACTGGACCAATGTTCATGCCATCAACTTGACGCTGGTGAATGTGACGAGTGAGGACAATGGCTTCAC 1480
Query 843 CCTGACGTGCATTGCAGAGAACGTGGTGGGCATGAGCAATGCCAGTGTTGCCCTCACTGTCTACTATCCCCCAC 916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 CCTGACGTGCATTGCAGAGAACGTGGTGGGCATGAGCAATGCCAGTGTTGCCCTCACTGTCTACTATCCCCCAC 1554
Query 917 GTGTGGTGAGCCTGGAGGAGCCTGAGCTGCGCCTGGAGCACTGCATCGAGTTTGTGGTGCGTGGCAACCCCCCA 990
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 GTGTGGTGAGCCTGGAGGAGCCTGAGCTGCGCCTGGAGCACTGCATCGAGTTTGTGGTGCGTGGCAACCCCCCA 1628
Query 991 CCAACGCTGCACTGGCTGCACAATGGGCAGCCTCTGCGGGAGTCCAAGATCATCCATGTGGAATACTACCAAGA 1064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 CCAACGCTGCACTGGCTGCACAATGGGCAGCCTCTGCGGGAGTCCAAGATCATCCATGTGGAATACTACCAAGA 1702
Query 1065 GGGAGAGATTTCCGAGGGCTGCCTGCTCTTCAACAAGCCCACCCACTACAACAATGGCAACTATACCCTCATTG 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 GGGAGAGATTTCCGAGGGCTGCCTGCTCTTCAACAAGCCCACCCACTACAACAATGGCAACTATACCCTCATTG 1776
Query 1139 CCAAAAACCCACTGGGCACAGCCAACCAGACCATCAATGGCCACTTCCTCAAGGAGCCCTTTCCAGAGAGCACG 1212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 CCAAAAACCCACTGGGCACAGCCAACCAGACCATCAATGGCCACTTCCTCAAGGAGCCCTTTCCAGAGAGCACG 1850
Query 1213 GATAACTTTATCTTGTTTGACGAAGTGAGTCCCACACCTCCTATCACTGTGACCCACAAACCAGAAGAAGACAC 1286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 GATAACTTTATCTTGTTTGACGAAGTGAGTCCCACACCTCCTATCACTGTGACCCACAAACCAGAAGAAGACAC 1924
Query 1287 TTTTGGGGTATCCATAGCAGTTGGACTTGCTGCTTTTGCCTGTGTCCTGTTGGTGGTTCTCTTCGTCATGATCA 1360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 TTTTGGGGTATCCATAGCAGTTGGACTTGCTGCTTTTGCCTGTGTCCTGTTGGTGGTTCTCTTCGTCATGATCA 1998
Query 1361 ACAAATATGGTCGACGGTCCAAATTTGGAATGAAGG--GTCCCGTG-----------GCTGTCA---TCAGTGG 1418
|||||||||||||||||||||||||||||||||||| |..||.|| .||..|| |||||.|
Sbjct 1999 ACAAATATGGTCGACGGTCCAAATTTGGAATGAAGGCTGGACCATGTTTTCCTTTTCCCTTCCAAAGTCAGTCG 2072
Query 1419 TGAGGAGGACTCAGCCAGCCCACTGCACCACATCAACC----ACGGCATCACCACGCCCTCGTCACTGGATGCC 1488
|||.|||||| |||||.| ||.||||.|
Sbjct 2073 -----------------------TGCTCCACAT-----TTTGACGGCTT-------------TCCCTGGTT--- 2102
Query 1489 GGGCCCGACACTGTG--GTCATTGGCA---TGACTCGCATCCCTGTC-ATTGAGAACC--CCCAGTACTTCCGT 1554
||||| .||.|| .|| || ||..||| ||.|| |.|.|.||.| ||||.|||
Sbjct 2103 ----------CTGTGAATTCCTT-CCAAGTTG-CTGCCAT--CTTTCTACTAATAAGCTGCCCAATAC------ 2156
Query 1555 CAGGGACACAACTGCCACAAGCCGGACACGTATGTGCAGCACATTAAGAGGAGAGACATCGTGCTGAAGCGAGA 1628
|||| ..||||.|||.|...||.||| |..|.|.|| |.||
Sbjct 2157 ----------ACTG-----TACCGGTCACCTCCCTGGAGC-CTCTCACAG------CCTC-------------- 2194
Query 1629 ACTGGGTGAGGGAGCCTTTGGAAAGGTCTTC----------CTGG-----CCGAGTGC-TACA-ACCTCAGCCC 1685
||||.||| ||||| |||| ||.|| || |||| |||
Sbjct 2195 -CTGGATGA-----------------TCTTCAGCCTCTATTCTGGAAAAACCAAG-GCTTACACACC------- 2242
Query 1686 GACCAAGGACAAGATGCTTGTGGCTGTGAAGGCCCTGAAGGATCCCACCCTGGCTGCCCGGAAGGATTTCCAGA 1759
|||.|..||| ||||| ||.|.| |||||| ||| |.||||
Sbjct 2243 -ACCCACTACA--ATGCT-----CTTTCA--GCCCTG-----------------TGC---------TCTCCA-- 2278
Query 1760 GGGAGGCC--GAGCTGCTCACCAACCTGCAGCATGAGCACA--TTGTCAAGTTCTATGGAGTGTGCGGCGATGG 1829
||.|||| | ||||.| ||| ||||| |||| ||
Sbjct 2279 -GGTGGCCTTG-GCTGTT--------------------ACATCTTGTC--GTTC-AT----------------- 2310
Query 1830 GGAC-CCCCTCATCATGGTCTTTGAATACATGAAGCATGG-------AGACCTGAATAAGTTCCTCAGGGCCCA 1895
| ||||| |.|| .|||||.| |.||.||| ||.| |||..|.||.|.||| |||..||||
Sbjct 2311 ---CACCCCT-ACCA---CCTTTGCA-AGATTAAG-ATTGTTAATAAAGATGTTAACACGTT-CTCTAGGCC-- 2372
Query 1896 TGGGCCAGATGCAATGATC-CTTGTGGATGGACAGCCACGCCA-----GGCCAAGGGTGAGCTGGGGCTCTCCC 1963
|| || .||.||.||||| |||| .|..|.|||||||.|||
Sbjct 2373 -----------------TCACT---------CCAACCTCGCCATAGCTGGCC---CGCTATCTGGGGCCCTC-- 2415
Query 1964 AAATGCTCCA------------CATTGCCAGTCAGATCGCCTCGGGTATGGTGTACCTGGCCTCCCAGCACTTT 2025
|||||.| |||| ..||| .||.|.| ||| ||
Sbjct 2416 ---TGCTCAAGAAAAGAAACTGCATT-------TTATC-------ATAAGTT----CTG-------------TT 2455
Query 2026 GTGCACCGAGACCTGGCCACCAGGAACTGCCTGGTTGGAGCGAATCTGCTAGTGAAGATTGGGGACTTCGGCAT 2099
||..|||| |||.||.|||| |.|.|||
Sbjct 2456 GTTTACCG------------------------------------TCTCCTGGTGA-------GTATTTC----- 2481
Query 2100 GTCCAGAGATGTCTACAGCACGGATTATTACAGGGTGGGAGGACACACCATGCTCCCCATTCGCTGGATGCCTC 2173
Sbjct 2482 -------------------------------------------------------------------------- 2481
Query 2174 CTGAAAGCATCATGTACCGGAAGTTCACTACAGAGAGTGATGTATGGAGCTTCGGGGTGATCCTCTGGGAGATC 2247
Sbjct 2482 -------------------------------------------------------------------------- 2481
Query 2248 TTCACCTATGGAAAGCAGCCATGGTTCCAACTCTCAAACACGGAGGTCATTGAGTGCATTACCCAAGGTCGTGT 2321
Sbjct 2482 -------------------------------------------------------------------------- 2481
Query 2322 TTTGGAGCGGCCCCGAGTCTGCCCCAAAGAGGTGTACGATGTCATGCTGGGGTGCTGGCAGAGGGAACCACAGC 2395
Sbjct 2482 -------------------------------------------------------------------------- 2481
Query 2396 AGCGGTTGAACATCAAGGAGATCTACAAAATCCTCCATGCTTTGGGGAAGGCCACCCCAATCTACCTGGACATT 2469
Sbjct 2482 -------------------------------------------------------------------------- 2481
Query 2470 CTTGGC 2475
Sbjct 2482 ------ 2481
