Nucleotide Global Alignment
Description
- Query:
- TRCN0000488868
- Subject:
- NR_002319.2
- Aligned Length:
- 3803
- Identities:
- 1429
- Gaps:
- 2330
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GGCCGGGTTGGGCGATTAACAGGCGGTGGCTAGGGAGGACGGAGAGGGGGCGTTTGCTCCTCTGGGACTTTTCA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TGCCTCGTTTTTTTTTTCAGATGTGGCTTGGTCTGGACGCAAGGTCCCAGCAGCCAGCTTAAGCTTACTCTTCT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GTGAAAGGGGAAAGTATCCCCTGTGGAAAGCAGTTAAACTTGTGGAGGGGGTGCGAGACGTGAGTTCTCCCCCA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TGCCAGGCGAATGGTGTGGACTTGAGCTGGTCCAGCAGCCGGCTCGACTTGTCTGAGGGAGCCCTGGAGGGGGC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GGGGAGGGGGCCCACAGAACGTGGGTTCTATAAAGAGACATTGGGAAGATTCGATTCCGAGAAGAGGAAGAGCC 370
Query 1 ---------------------------------------------ATGGCGTCGGCCTCCTCCGGGCCGTCGTC 29
|||||||||||||||||||||||||.|||
Sbjct 371 GGATTGAAAGAGAGCCAGGCCCTTGAGGGGGAGGGGGCTGCCAAGATGGCGTCGGCCTCCTCCGGGCCGTTGTC 444
Query 30 TTCGGTCGGTTTTTCATCCTTTGATCCCGCGGTCCCTTCCTGTACCTTGTCCTCAGCATCTGGAATCAAGAGAC 103
||||||||||||||| |||.|||||||||||||||||||||||||||.||||||||||||||||||||||||.|
Sbjct 445 TTCGGTCGGTTTTTC-TCCGTTGATCCCGCGGTCCCTTCCTGTACCTCGTCCTCAGCATCTGGAATCAAGAGTC 517
Query 104 CCATGGCATCTGAGGTGCCTTATGCCTCTGGCATGCCCATCAAGAAAATAGGCCATAGAAGTGTTGATTCCTCA 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 518 CCATGGCATCTGAGGTGCCTTATGCCTCTGGCATGCCCATCAAGAAAATAGGCCATAGAAGTGTTGATTCCTCA 591
Query 178 GGAGAGACAACATATAAAAAGACAACCTCATCAGCCTTGAAAGGTGCCATCCAGTTAGGCATTACCCACACTGT 251
|||| .||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 GGAG---------------GGACAACCTCATCAGCCTTGAAAGGTGCCATCCAGTTAGGCATTACCCACACTGT 650
Query 252 GGGGAGCCTGAGTACCAAACCAGAGCGTGATGTCCTCATGCAAGATTTCTACGTGGTTGAGAGTATCTTCTTTC 325
|||||||||||||||||||||||||.|||||||||||||||||||||||.||.||||.||||||||||||||||
Sbjct 651 GGGGAGCCTGAGTACCAAACCAGAGAGTGATGTCCTCATGCAAGATTTCCACATGGTGGAGAGTATCTTCTTTC 724
Query 326 CCAGTGAAGGGAGCAACCTGACCCCTGCTCATCACTACAATGACTTTCGTTTCAAGACCTATGCACCTGTTGCC 399
||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||
Sbjct 725 CCAGTGAAGGGAGCAACCTGACCCCTGCTCATCACTACAATGCCTTTCGTTTCAAGACCTATGCACCTGTTGCC 798
Query 400 TTCCGCTACTTCCGGGAGCTATTTGGTATCCGGCCCGATGATTACTTGTATTCCCTCTGCAGTGAGCCGCTGAT 473
||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 799 TTCCGCTACTTCTGGGAGCTATTTGGTATCCGGCCCGATGATTACTTGTATTCCCTCTGCAGTGAGCCGCTGAT 872
Query 474 TGAACTCTGTAGCTCTGGAGCTAGTGGTTCCCTATTCTATGTGTCCAGCGACGATGAGTTCATTATTAAGACAG 547
|||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||.|||||||||
Sbjct 873 TGAACTCTGTAGCTCTGGAGCTAGTGGTTCCCTGTTCTATGTGTCCAGCGACGATGAGTTCATTGTTAAGACAG 946
Query 548 TCCAACATAAAGAGGCGGAATTTCTGCAGAAGCTGCTTCCAGGATACTACATGAACCTCAACCAGAACCCTCGG 621
|||.|||||||||.|||||.||||||||||||||||||||||||||||||||.|||||||||||||||||||||
Sbjct 947 TCCGACATAAAGAAGCGGAGTTTCTGCAGAAGCTGCTTCCAGGATACTACATAAACCTCAACCAGAACCCTCGG 1020
Query 622 ACTTTGCTGCCTAAATTCTATGGACTGTACTGTGTGCAGGCAGGTGGCAAGAACATTCGGATTGTGGTGATGAA 695
|||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||
Sbjct 1021 ACTTTGCTGCCTAAATTCTATGGACTGTACTGTGTGCAGACAGGTGGCAAGAACATTCGGATTGTGGTGATGAA 1094
Query 696 CAATCTTTTACCAAGATCGGTAAAAATGCATATCAAATATGACCTCAAAGGCTCAACCTACAAACGGCGGGCTT 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||..||||||||||
Sbjct 1095 CAATCTTTTACCAAGATCGGTAAAAATGCATATCAAATATGACCTCAAAGGCTCAACCTACAGGCGGCGGGCTT 1168
Query 770 CCCAGAAAGAGCGAGAGAAGCCTCTTCCCACATTTAAAGACCTAGACTTCTTACAAGACATCCCTGATGGTCTT 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1169 CCCAGAAAGAGCGAGAGAAGCCTCTTCCCACATTTAAAGACCTAGACTTCTTACAAGACATCCCTGATGGTCTT 1242
Query 844 TTTTTGGATGCTGACATGTACAACGCTCTCTGTAAGACCCTGCAGCGTGACTGTTTGGTGCTGCAGAGCTTCAA 917
|||||||||||||||.||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1243 TTTTTGGATGCTGACGTGCACAACGCTCTCTGTAAGACCCTGCAGCGTGACTGTTTGGTGCTGCAGAGCTTCAA 1316
Query 918 GATAATGGATTATAGCCTCTTGATGTCAATCCATAATATAGATCATGCACAACGAGAGCCCTTAAGCAGTGAAA 991
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||
Sbjct 1317 GATAATGGATTATAGCCTCTTGATGTCAATCCATAATATAGATCATGCACAACGAGAGCCCTTAAGCAGCGAAA 1390
Query 992 CACAGTACTCAGTTGATACTCGAAGACCGGCCCCCCAAAAGGCTCTGTATTCCACAGCCATGGAATCCATCCAG 1065
||||.|||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1391 CACAATACTCAGTTGATACTCGAAGACCAGCCCCCCAAAAGGCTCTGTATTCCACAGCCATGGAATCCATCCAG 1464
Query 1066 GGAGAGGCTCGACGGGGTGGTACCATGGAGACTGATGACCATATGGGTGGCATCCCTGCCCGGAATAGTAAAGG 1139
||||||||||||||||||||.|||||||||||.|||||||||||||||||||||||||||||||||||||||||
Sbjct 1465 GGAGAGGCTCGACGGGGTGGCACCATGGAGACCGATGACCATATGGGTGGCATCCCTGCCCGGAATAGTAAAGG 1538
Query 1140 GGAAAGGCTTCTGCTTTATATTGGCATCATTGACATTCTACAGTCTTACAGGTTTGTTAAGAAGTTGGAGCACT 1213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1539 GGAAAGGCTTCTGCTTTATATTGGCATCATTGACATTCTACAGTCTTACAGGTTTGTTAAGAAGTTGGAGCACT 1612
Query 1214 CTTGGAAAGCCCTGGTACATGACGGAGACACTGTCTCAGTGCATCGCCCAGGCTTCTACGCTGAACGGTTCCAG 1287
||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||.||||||.||||||||
Sbjct 1613 CTTGGAAAGCCCTGATACATGACGGAGACACTGTCTCAGTGCATCGCCCAGGCTTCTATGCTGAATGGTTCCAG 1686
Query 1288 CGCTTCATGTGCAACACAGTATTTAAGAAGATTCCCT------------------------------------- 1324
|||||||||||||||||.|||||||||||||||||||
Sbjct 1687 CGCTTCATGTGCAACACGGTATTTAAGAAGATTCCCTTGAAGCCTTCTCCTTCCAAAAAACTTCGGTCTGGCTC 1760
Query 1325 -------------------------------------------------------------------------- 1324
Sbjct 1761 ATCTTTCTCTCAGCGAGCAGGCTCCAGTGGCAACTCCTGCATTACTTACCAGCCATTGGTCTCTGGGGAACACA 1834
Query 1325 ------------------------------------GCGTTCACCTTGGTCGTCCTGATGTTTTACCTCAGACT 1362
|.||||||||||||.|||||||||||||||||||||||
Sbjct 1835 AGGCACAAGTGACAACAAAGGCGGAAGTGGAGCCAGGTGTTCACCTTGGTTGTCCTGATGTTTTACCTCAGACT 1908
Query 1363 CCACCTTTGGAGGAAATCAGTGAGGGCTCGCCTATTCCTGACCCCAGTTTCTCACCTCTAGTTGGAGAGACTTT 1436
|||||||||||||||||||||||||||||.||||.|||||||||||||||||||||||||||||.|||||||||
Sbjct 1909 CCACCTTTGGAGGAAATCAGTGAGGGCTCACCTACTCCTGACCCCAGTTTCTCACCTCTAGTTGAAGAGACTTT 1982
Query 1437 GCAAATGCTAACTACAAGT----ACAACCTTGGAAAAGCTTGAAGT---TGCAGAGT-CAGAGTTC--ACCCAT 1500
||||||||||||||||||| |||||..|| ||| ||..||.| .|||.||| |||||.
Sbjct 1983 GCAAATGCTAACTACAAGTGTGGACAACAGTG-----------AGTATATGGGGAATGGAGACTTCTTACCCAC 2045
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2046 CCGGCTGCAGGCCCAGCAGGATGCTGTCAACACAGTTTGTCATTCAAAGACCCGCAGCAACCCTGAGAACAACG 2119
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2120 TGGGCCTTATCACACTGGATAATGACTGTGAAGTGCTGACCACACTCACCCCAGACACTGGCCGTATCCTGTCC 2193
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2194 AAGCTACATACTGTCCAACCCAAGGGCAAGATCACCTTCTGCATGGGCATCCACGTGGCCCATCTGGCTCTGAA 2267
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2268 GCACCGACAAGGCAACAATCACAAGATCCGCATCATTGCCTTTGTGGGAAACCCGGTGGAGGACAATGAGAAGA 2341
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2342 ATCTGGTGAAACTGGCTAAATGCCTCAAGAAGGAGAAAGTAAATGTTGACATTATCAATTTTGGGGAAGAGGAG 2415
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2416 GTGAACACAGAAAAGCTGACAGCCTTTGTAAACACGTTGAATGGCAAAGATGGAACCGGTTCTCATCTGGTGAC 2489
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2490 AGTGCCTCCTGGGCCCAGTTTGGCTGATGCTCTCATCAGTTTTCCGATTTTGGCTGGTGAAGGTGGTGCCATGA 2563
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2564 TGGGTCTTGGTGCCAGTGACTTTGAATTTGGAGTAGATCCCAGTGCTGATCCTGAGCTGGCCTTGGTCCTTCGT 2637
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2638 GTATTTATGGAAGAGCAGCGGCAGCGGCAGGAGGAGGAGGCCCGGCAGGCAGCTGCAGCTTCTGCTGCTGAGGC 2711
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2712 CGGGATTGCTACGACTGGGACTGAAGACTCAGACGATGCCCTGCTGAAGATGACCATCAGCCAGCAAGAGTTTG 2785
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2786 GCCACACTGGGCTTCCTGACCTAAGCAGTATGACTGAGGAAGAGAAGATTGTTTGTGCCATGCAGATGTCCCTG 2859
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2860 CAGGGAGCAGAGTTTGGCCTGGCAGAATCAGCAGACATTGATGCCAGCTCAGCCATGGACACATCTGAGCCAGC 2933
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2934 CAAGGAGGAGGATGATTACGACGTGATGCAAGACCCTGAGTTCCTTCAGAGTGTCCTAGAGAACCTCCCAGGTG 3007
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3008 TGGATCCCAACAATGAAGCCATTCGAAATGCTGTGGGCTCCCTGGCCTCCCAGGCCACCAAGGACAGCAAGAAG 3081
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3082 GACAAGAAGGAGGAAGACAAGAAGTGAGACTGGAGGGAAAGGGTAGCTGAGCCTGCTCAGGGGACTGCATGGGA 3155
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3156 AGCACGGAATATAGGGTTAGATGTGTGTTATCTGTAATCATTATAGCCTAAATAAAGCTTGGCAAGATTTTTTC 3229
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3230 CTTCTTTGCTTCAAAAAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 3303
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3304 GAAAGAAAAGAAAAGAAAAGAAAAGAAATCCTGATGCCTAAATCTGACCCCTTGAAATGCTGATGAGCTTCATC 3377
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3378 TGAGCTGTGTGATCTCTCATGTGCAGCTAAGGTTGAGAACCACTAACATAAAATAATTCACATTAAAATCACCA 3451
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3452 GGAAGCTTTAATAACATTTCAAATACTTGGACCCAACCCCTAAAGATTCTAATTTAATTGGCCTGGGACTCAGG 3525
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3526 TACTGATATTTTTCAAAAGCTCACAAGGTAATTCTGAAATTCAGCAAAAGTTGAGAACCACTATTCAGACTAAG 3599
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3600 TGACTTGTCCAATGTCTCTGGGTGCATCAGACTTTACGGCCTTCCTTACACAGGGGTTGTGAATGAAATATGGC 3673
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3674 TATGGAAAGCAATTGTTGAGTAATATGTTATAAAGTATGGTGGTGATGATGATGATGACAATGATGACAATATT 3747
Query 1501 ----------------------------- 1500
Sbjct 3748 TCTTGAGTGCGTCCTATGCACCAGGCACT 3776
