Construct: ORF TRCN0000488868

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF020218.1_s317c1
DNA Barcode:
CCATATAGGAAATTTCAAACAAAT
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Has stop codon in insert

Originally Annotated References:

Gene:
PIP5K1A (8394)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000488868
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 8394 PIP5K1A phosphatidylinositol-4-phos... NM_001135637.2 99.9% 100% 930C>T
2 human 8394 PIP5K1A phosphatidylinositol-4-phos... NM_003557.3 91% 91% 930C>T;1325_1471del
3 human 8394 PIP5K1A phosphatidylinositol-4-phos... NM_001330689.2 90.8% 90.9% 83_85delCAG;933C>T;1328_1474del
4 human 8394 PIP5K1A phosphatidylinositol-4-phos... XM_005245528.5 89.2% 89.2% 83_115del;963C>T;1358_1504del
5 human 8394 PIP5K1A phosphatidylinositol-4-phos... XM_005245527.4 89% 89.1% 117_152del;966C>T;1361_1507del
6 human 8394 PIP5K1A phosphatidylinositol-4-phos... NM_001135638.2 88.9% 88.9% (many diffs)
7 human 8394 PIP5K1A phosphatidylinositol-4-phos... XM_006711564.4 88.9% 88.9% 84_122del;969C>T;1364_1510del
8 human 8394 PIP5K1A phosphatidylinositol-4-phos... XM_005245525.5 87.3% 87.4% (many diffs)
9 human 8394 PIP5K1A phosphatidylinositol-4-phos... XM_006711563.4 87% 87.1% (many diffs)
10 human 8394 PIP5K1A phosphatidylinositol-4-phos... XM_017002440.1 86.5% 88.7% 930C>T;1324_1325ins130;1371_1452del
11 human 8394 PIP5K1A phosphatidylinositol-4-phos... XM_017002439.1 86.3% 88.5% (many diffs)
12 human 8394 PIP5K1A phosphatidylinositol-4-phos... XM_011510046.3 85.9% 86% (many diffs)
13 human 8394 PIP5K1A phosphatidylinositol-4-phos... XM_005245532.4 85.8% 85.8% (many diffs)
14 human 8394 PIP5K1A phosphatidylinositol-4-phos... NM_001135636.2 85.7% 85.6% (many diffs)
15 human 8394 PIP5K1A phosphatidylinositol-4-phos... XM_024450130.1 84.7% 84% (many diffs)
16 human 8394 PIP5K1A phosphatidylinositol-4-phos... XM_011510043.3 84.6% 84.5% (many diffs)
17 human 8394 PIP5K1A phosphatidylinositol-4-phos... XM_024450131.1 84.6% 84.6% 0_1ins105;825C>T;1220_1366del
18 human 8394 PIP5K1A phosphatidylinositol-4-phos... XM_006711567.4 84.4% 82.8% (many diffs)
19 human 8394 PIP5K1A phosphatidylinositol-4-phos... XM_011510048.3 84.4% 82.8% (many diffs)
20 human 8394 PIP5K1A phosphatidylinositol-4-phos... XM_011510049.3 84.4% 82.8% (many diffs)
21 human 8394 PIP5K1A phosphatidylinositol-4-phos... XM_017002441.2 84.4% 82.8% (many diffs)
22 human 8394 PIP5K1A phosphatidylinositol-4-phos... XM_011510045.3 84.1% 84.2% (many diffs)
23 human 8394 PIP5K1A phosphatidylinositol-4-phos... XM_005245530.5 84% 84% (many diffs)
24 human 8394 PIP5K1A phosphatidylinositol-4-phos... XM_024450129.1 83% 82.3% (many diffs)
25 human 8394 PIP5K1A phosphatidylinositol-4-phos... XM_006711568.4 82.9% 82.7% (many diffs)
26 human 266971 PIPSL PIP5K1A and PSMD4 like (pse... NR_002319.2 37.5% (many diffs)
27 human 206426 PIP5K1P1 phosphatidylinositol-4-phos... NR_027712.1 33.1% (many diffs)
28 mouse 18720 Pip5k1a phosphatidylinositol-4-phos... XM_017319485.1 86.7% 91.2% (many diffs)
29 mouse 18720 Pip5k1a phosphatidylinositol-4-phos... NM_001293707.1 79.2% 83.3% (many diffs)
30 mouse 18720 Pip5k1a phosphatidylinositol-4-phos... NM_008847.3 79.2% 83.3% (many diffs)
31 mouse 18720 Pip5k1a phosphatidylinositol-4-phos... XR_375499.2 33.7% (many diffs)
32 mouse 18720 Pip5k1a phosphatidylinositol-4-phos... XR_375498.2 33.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
72
ORF end:
1572
ORF length:
1500
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61caggcttcac catggcgtcg gcctcctccg ggccgtcgtc ttcggtcggt ttttcatcct
121ttgatcccgc ggtcccttcc tgtaccttgt cctcagcatc tggaatcaag agacccatgg
181catctgaggt gccttatgcc tctggcatgc ccatcaagaa aataggccat agaagtgttg
241attcctcagg agagacaaca tataaaaaga caacctcatc agccttgaaa ggtgccatcc
301agttaggcat tacccacact gtggggagcc tgagtaccaa accagagcgt gatgtcctca
361tgcaagattt ctacgtggtt gagagtatct tctttcccag tgaagggagc aacctgaccc
421ctgctcatca ctacaatgac tttcgtttca agacctatgc acctgttgcc ttccgctact
481tccgggagct atttggtatc cggcccgatg attacttgta ttccctctgc agtgagccgc
541tgattgaact ctgtagctct ggagctagtg gttccctatt ctatgtgtcc agcgacgatg
601agttcattat taagacagtc caacataaag aggcggaatt tctgcagaag ctgcttccag
661gatactacat gaacctcaac cagaaccctc ggactttgct gcctaaattc tatggactgt
721actgtgtgca ggcaggtggc aagaacattc ggattgtggt gatgaacaat cttttaccaa
781gatcggtaaa aatgcatatc aaatatgacc tcaaaggctc aacctacaaa cggcgggctt
841cccagaaaga gcgagagaag cctcttccca catttaaaga cctagacttc ttacaagaca
901tccctgatgg tctttttttg gatgctgaca tgtacaacgc tctctgtaag accctgcagc
961gtgactgttt ggtgctgcag agcttcaaga taatggatta tagcctcttg atgtcaatcc
1021ataatataga tcatgcacaa cgagagccct taagcagtga aacacagtac tcagttgata
1081ctcgaagacc ggccccccaa aaggctctgt attccacagc catggaatcc atccagggag
1141aggctcgacg gggtggtacc atggagactg atgaccatat gggtggcatc cctgcccgga
1201atagtaaagg ggaaaggctt ctgctttata ttggcatcat tgaCATTCTA CAGTCTTACA
1261GGTTTGTTAA GAAGTTGGAG CACTCTTGGA AAGCCCTGGT ACATGACGGA GACACTGTCT
1321CAGTGCATCG CCCAGGCTTC TACGCTGAAC GGTTCCAGCG CTTCATGTGC AACACAGTAT
1381TTAAGAAGAT TCCCTGCGTT CACCTTGGTC GTCCTGATGT TTTACCTCAG ACTCCACCTT
1441TGGAGGAAAT CAGTGAGGGC TCGCCTATTC CTGACCCCAG TTTCTCACCT CTAGTTGGAG
1501AGACTTTGCA AATGCTAACT ACAAGTACAA CCTTGGAAAA GCTTGAAGTT GCAGAGTCAG
1561AGTTCACCCA TTGAGACCCA GCTTTCTTGT ACAAAGTGGT TGATATCGGT AAGCCTATCC
1621CTAACCCTCT CCTCGGTCTC GATTCTACGT AGTAATGAAC TAGTCCGTAA CTTGAAAGTA
1681TTTCGATTTC TTGGCTTTAT ATATCTTGTG GAAAGGACGA CCATATAGGA AATTTCAAAC
1741AAATACGCGT TAAGTCgaca atcaacctct ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)