Nucleotide Global Alignment
Description
- Query:
- TRCN0000488868
- Subject:
- XR_375498.2
- Aligned Length:
- 3867
- Identities:
- 1304
- Gaps:
- 2370
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CTCCGGCTAGATAGACGAACGCCGAGAAGCTGTGGCGCATGCGCAATACCGGGGTTTCCTTGGCCGCCCACCCT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GAGCCGAGCGGTGGAGTTGGGGATAAACAGGCAGTGGCTGGGGAGGTGAGGGAGGGGGGGCATTCGCTTTTGGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGCACCTCAGGTGCCTAGGTTTTCCTTTAGGTTTGTTCTATCCGAGACGCGGGACTCCCGGGGCCCGGCTCAAG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TGTTCCTGTCTGGTAAGAGAAGGTAGCTTTGGCGGAGAGCAGTTCAAGTTGCTAGGAAGGTGCGAGACTGCAGC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TCTCCCCCATGCCGGGCAAGTGGTGCGGTCCTGAGCTTGTCCTGGAGCCTGAACAACGCCTGTGAGAAGCCCGC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CGAACGCGGGTTCTGTGAAGAGACGTGGGGAAGATTCGATTCCGAGAAAAGGAAAAGCCGGATTGAAAGGGAGC 444
Query 1 ------------------------------ATGGCGTCGGCCTCCTCCGGGCCGTCGTCTTCGGTCGGTTTTTC 44
||||||||.||||||||.|||||..|| .|||.|||.|||||
Sbjct 445 GAAGCCGCTGAGGGGGAGGGGGCTGCCAAGATGGCGTCCGCCTCCTCAGGGCCAGCG---GCGGCCGGGTTTTC 515
Query 45 ATCCTTTGATCCCGCGGTCCCTTCCTGTACCTTGTCCTCAGCATCTGGAATCAAGAGACCCATGGCATCTGAGG 118
||||.|||||.|||.||.||||.|..|||||....|..||||||||||||||||||||.|||..|.||||||||
Sbjct 516 ATCCCTTGATGCCGGGGCCCCTGCTGGTACCGCAGCAGCAGCATCTGGAATCAAGAGAGCCACAGTATCTGAGG 589
Query 119 TGCCTTATGCCTCTGGCATGCCCATCAAGAAAATAGGCCATAGAAGTGTTGATTCCTCAGGAGAGACAACATAT 192
..||||..|||||||.||||||..|.||.||||||||||||.||||||||||||||||.||||||||.|||||.
Sbjct 590 GACCTTCCGCCTCTGTCATGCCTGTTAAAAAAATAGGCCATCGAAGTGTTGATTCCTCTGGAGAGACTACATAC 663
Query 193 AAAAAGACAACCTCATCAGCCTTGAAAGGTGCCATCCAGTTAGGCATTACCCACACTGTGGGGAGCCTGAGTAC 266
||.||||||||.|||||||||||||||||||||||||||||||||||.||.|||||||||||.||||||||.||
Sbjct 664 AAGAAGACAACTTCATCAGCCTTGAAAGGTGCCATCCAGTTAGGCATCACTCACACTGTGGGCAGCCTGAGCAC 737
Query 267 CAAACCAGAGCGTGATGTCCTCATGCAAGATTTCTACGTGGTTGAGAGTATCTTCTTTCCCAGTGAAGGGAGCA 340
||||||||||||||||||||||||||||||.|||||||||||.|||||.|||||.||.|||||||||||.||||
Sbjct 738 CAAACCAGAGCGTGATGTCCTCATGCAAGACTTCTACGTGGTGGAGAGCATCTTTTTCCCCAGTGAAGGCAGCA 811
Query 341 ACCTGACCCCTGCTCATCACTACAATGACTTTCGTTTCAAGACCTATGCACCTGTTGCCTTCCGCTACTTCCGG 414
|||||||.||.|||||.||.||||||||||||||.||||||||||||||.||||||||||||||.||||||.|.
Sbjct 812 ACCTGACACCGGCTCACCATTACAATGACTTTCGATTCAAGACCTATGCGCCTGTTGCCTTCCGTTACTTCAGA 885
Query 415 GAGCTATTTGGTATCCGGCCCGATGATTACTTGTATTCCCTCTGCAGTGAGCCGCTGATTGAACTCTGTAGCTC 488
|||||.|||||.||||||||.||||||||||||||.|||||.|||||||||||..||||||||||||..|..||
Sbjct 886 GAGCTCTTTGGCATCCGGCCTGATGATTACTTGTACTCCCTTTGCAGTGAGCCATTGATTGAACTCTCCAATTC 959
Query 489 TGGAGCTAGTGGTTCCCTATTCTATGTGTCCAGCGACGATGAGTTCATTATTAAGACAGTCCAACATAAAGAGG 562
||||||||||||||||||.||||||||||||||.||.|||||.|||||.||||||||.|||||.||||||||.|
Sbjct 960 TGGAGCTAGTGGTTCCCTCTTCTATGTGTCCAGTGATGATGAATTCATCATTAAGACCGTCCAGCATAAAGAAG 1033
Query 563 CGGAATTTCTGCAGAAGCTGCTTCCAGGATACTACATGAACCTCAACCAGAACCCTCGGACTTTGCTGCCTAAA 636
|.|||||||||||||||.||||||||||||||||||||||.||.|||||.||||||||.|||||||||||.|||
Sbjct 1034 CAGAATTTCTGCAGAAGTTGCTTCCAGGATACTACATGAATCTTAACCAAAACCCTCGTACTTTGCTGCCCAAA 1107
Query 637 TTCTATGGACTGTACTGTGTGCAGGCAGGTGGCAAGAACATTCGGATTGTGGTGATGAACAATCTTTTACCAAG 710
||.||||||.|||||||||||||.|||||.|||||||||||.||.||||||||||||||||||||.||.||..|
Sbjct 1108 TTTTATGGATTGTACTGTGTGCAAGCAGGCGGCAAGAACATACGAATTGTGGTGATGAACAATCTCTTGCCTCG 1181
Query 711 ATCGGTAAAAATGCATATCAAATATGACCTCAAAGGCTCAACCTACAAACGGCGGGCTTCCCAGAAAGAGCGAG 784
.||.||.|||||||||||.|||||||||||.||.||.|||||.|||||.|||||||||||.||||||||.||||
Sbjct 1182 GTCAGTCAAAATGCATATGAAATATGACCTGAAGGGTTCAACTTACAAGCGGCGGGCTTCTCAGAAAGAACGAG 1255
Query 785 AGAAGCCTCTTCCCACATTTAAAGACCTAGACTTCTTACAAGACATCCCTGATGGTCTTTTTTTGGATGCTGAC 858
||||..||||.|||||.|||||||||||.||||||.|||||||.||||||||.||.||.|||||||||||||||
Sbjct 1256 AGAAAACTCTCCCCACCTTTAAAGACCTGGACTTCCTACAAGATATCCCTGACGGCCTATTTTTGGATGCTGAC 1329
Query 859 ATGTACAACGCTCTCTGTAAGACCCTGCAGCGTGACTGTTTGGTGCTGCAGAGCTTCAAGATAATGGATTATAG 932
|||||||..|||||.||||||||.||.|||||||||||||||||||||||||||||||||||||||||.||.||
Sbjct 1330 ATGTACAGTGCTCTGTGTAAGACTCTACAGCGTGACTGTTTGGTGCTGCAGAGCTTCAAGATAATGGACTACAG 1403
Query 933 CCTCTTGATGTCAATCCATAATATAGATCATGCACAACGAGAGCCCTTAAGCAGTGAAACACAGTACTCAGTTG 1006
|||.||||||||.|||||.||.||.||.||||||||..|.||||||...||||.|||.|||||||||||.|.||
Sbjct 1404 CCTGTTGATGTCCATCCACAACATGGACCATGCACAGAGGGAGCCCACGAGCAATGACACACAGTACTCGGCTG 1477
Query 1007 ATACTCGAAGACCGGCCCCCCAAAAGGCTCTGTATTCCACAGCCATGGAATCCATCCAGGGAGAGGCTCGACGG 1080
|.||.||.|||||.|||||.||.|||||.||.|||||||||||.|||||||||||||||||.||||||||||||
Sbjct 1478 ACACGCGCAGACCAGCCCCACAGAAGGCGCTCTATTCCACAGCTATGGAATCCATCCAGGGCGAGGCTCGACGG 1551
Query 1081 GGTGGTACCATGGAGACTGATGACCATATGGGTGGCATCCCTGCCCGGAATAGTAAAGGGGAAAGGCTTCTGCT 1154
||.||.||..||||||||||.|||||.|||||||||||||||||||||||||..|||||.||||||||.|||||
Sbjct 1552 GGCGGCACTGTGGAGACTGAGGACCACATGGGTGGCATCCCTGCCCGGAATAACAAAGGAGAAAGGCTCCTGCT 1625
Query 1155 TTATATTGGCATCATTGACATTCTACAGTCTTACAGGTTTGTTAAGAAGTTGGAGCACTCTTGGAAAGCCCTGG 1228
||||||||||||||||||.|||||.|||||.||||||||||||||||||||||||||||||||||||||.||||
Sbjct 1626 TTATATTGGCATCATTGATATTCTTCAGTCCTACAGGTTTGTTAAGAAGTTGGAGCACTCTTGGAAAGCACTGG 1699
Query 1229 TACATGACGGAGACACTGTCTCAGTGCATCGCCCAGGCTTCTACGCTGAACGGTTCCAGCGCTTCATGTGCAAC 1302
|.|||||.||.||.||.||.|||||||||||.|||||||||||.|||||.|||||||||||.||||||||||||
Sbjct 1700 TCCATGATGGGGATACGGTGTCAGTGCATCGTCCAGGCTTCTATGCTGAGCGGTTCCAGCGTTTCATGTGCAAC 1773
Query 1303 ACAGTATTTAAGAAGATTCCCT---------------------------------------------------- 1324
|||||.||.|||||||||||||
Sbjct 1774 ACAGTGTTCAAGAAGATTCCCTGTAAGTGGCTTCTACCAGATGATCCCCCAGTGGCTCCCTTCCCCCAAGACAT 1847
Query 1325 -------------------------------------------------------------------------- 1324
Sbjct 1848 GGGGGGCAAGACACCTCTGTCAGGGAGCTGCCAAGGCCAGAGGCCTCTCCTGCTCTGCCTACATCCTGTGAGCG 1921
Query 1325 ---------------------------------------------GCGTT------------------------ 1329
|||||
Sbjct 1922 CTGCTTCTCGTCCTTGTGTCAGTCACTGTCTGTCCCAGTGTTTCCGCGTTGCTGCTCCCCCCTGGCTCTCCCTA 1995
Query 1330 -------------------------------------------------------------------------- 1329
Sbjct 1996 CATGTATCGTCGAGTGAAGCCTTCTCCTACCAAAAAGTTTCGGTCTGGCCCGTCTTTCTCTCGGCGATCAGGCC 2069
Query 1330 -------------------------------------------------------------------------- 1329
Sbjct 2070 CCAGCGGCAACTCCTGCACCTCCCAGCTGATGGCCTCTGGGGAACACAGAGCACAAGTGACCACCAAGGCGGAA 2143
Query 1330 ---------------CACCTTGGTCGTCCTGATGTTTTACCTCAGACTCCACCTTTGGAGGAAATCAGTGAGGG 1388
||||||||.|||||||||||.|||||||||||||||||||||||||||||.||||||||
Sbjct 2144 GTGGAGCCAGATGTACACCTTGGGCGTCCTGATGTCTTACCTCAGACTCCACCTTTGGAGGAAATAAGTGAGGG 2217
Query 1389 CTCGCCTATTCCTGACCCCAGTTTCTCACCTCTAGTTGGAGAGACTTTGCAAATGCTAACTACAAGTACAACCT 1462
.||.|||.||||||.||||||||||||||||.||||||||.|..||||||||||.||||.|...|||.||||||
Sbjct 2218 TTCACCTGTTCCTGGCCCCAGTTTCTCACCTGTAGTTGGACAACCTTTGCAAATACTAAATTTGAGTTCAACCT 2291
Query 1463 TGGAAAAGCTTGAAGTTGCAGAGTCAGAGTTCACCCAT------------------------------------ 1500
|||||||||||||.|||||||||||||||||||||||.
Sbjct 2292 TGGAAAAGCTTGATGTTGCAGAGTCAGAGTTCACCCACTGAGCAGTGAGCCTCAGAAGACCTGAAACAAGACTC 2365
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2366 TGCTGTCGCTTTGATCCCAAGATGTCAGCCCTTGCCCCAGGAATGCTGAATCGTCTTCTTGGTCATCAACAGAG 2439
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2440 GAGAGAATGTGGAGCTAGCAGGGCTCTGACACTGTCTCCCCTTCCTCTGGGCAGTAGTGCCTTTGACAGTTGAG 2513
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2514 GACAGCATCGTCCCCACCACTCCAGAAGTGGGTGGCGTGAATTTTCCACTGCCTGCCATGGCTTCTATAGCTGA 2587
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2588 ATATTTTTCAAACCCCCATTCTTTGTGCTGACATGGGGTTGCTGGACTGGTGGTTTCCTCCTGTTTACCTTTCT 2661
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2662 CCTGGAGCTGGACTCTTCATTTCCTCAGGACGGACTGGCTGGACATTGTTCCTGCCTTGGCTCTCCCGCTGGTC 2735
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2736 TTTGGAGACTCCCAATGATTTGTATAAAGGTGTTTGGGGGAAAGTAAGGATCATCCTTACTCCCAACCTTCTTT 2809
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2810 TCCTTAAAAAAGGAAAAAAAAAAAAAAAAAAAACACAAAGAGCACACAATGTAAATTTGAGCCAGTCTCAGATA 2883
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2884 AAAGTTCTCTAAGTGTTGTAGAAGAGCCCTAGTGTTTGTGAAGCAGAAAGGCTGGGGCTGCCCCACCAGCAGCT 2957
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2958 GCTCTCTGACTCCCTCACTTAGGGTTGAGGGAATAGAGAGGGCCTGGCCCTTTTTTAAGACAAAGGGGCAGCCA 3031
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3032 TGTTAGGAGAGTGGACCTTAGCAGGACCCTACTCACTGCCAGGTCTTCGGTTATTACTATTCTGCAATTTGGAA 3105
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3106 TGTATCCTCATAGTTTTTTCTAGATATAAAGAATTATCAAATGATTTTAGACCATTCTCCAAAGGAGATTTCTT 3179
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3180 TGTTCTTCCTATATTTTCCAACAGTATTCTGCTCTTTGTGGAGCTACGGTGGAGGGAGATGTTTGTGTCTGTTT 3253
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3254 AACAGGCAGTCTGTATCTATGAGGCTAGAGAATATTTTCTTAAACTCCTAGGGAGCCACAGACTTCCCTCTGTA 3327
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3328 CGGTTGTCGCCATGTCACCTGGCCTGCCCTTACTCTGCAGAGAAGCTGGAAATGGGGCCACGGAGCCCTCTCCT 3401
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3402 TCCTCTCAGTTGTGGCCCATCTGGTCCTGGCTGGTGGGGCAGTGCATGGTGTTTCAGGCTGGCTGTTGAAATCC 3475
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3476 CACATTAGTTCCTTCCCTGTCCCGTCCCACCTTGATAGCAGGTTAGCCAACCCCCACGTAACTGTCTATATTAG 3549
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3550 ACACCCCCAGCCACCTTCTGGCTGCCTGTCTTTGCTGCCATGTTCTTTTTTACAAGAAGGAAACAAACAATTTC 3623
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3624 TTGCTATTTTTTTTTCATAATTTACTATTTATGATGTATTTAAGTGTTTTATTCAGGACAGGGTTCTGTAAGGG 3697
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3698 GTGGGAGGGAGTATTTGAGGGAGGGCTGGGACTTAGGGAAAGGACATGGGATTCAACATTTTTATGGAGTGTTA 3771
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3772 CTATTTGCCTCTACTTTGTATTGTTGAAAAATGACAGATGCAATATAAAAGTAATAAATATCTGGTTTTAATGT 3845
Query 1501 ------------------- 1500
Sbjct 3846 ATTAAAGTTCTAGCAATCA 3864
