Nucleotide Global Alignment

Description

Query:
TRCN0000489110
Subject:
XR_001779869.1
Aligned Length:
3323
Identities:
1130
Gaps:
2082

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GGATTCCCAGCTGCGTCCACAGCGTTGCGGCGCAATGCGCGCCCTGCTTTCCCCTCCTTACAGACTAGGTGCCC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AGTCCGCTGTCACCACTTATCTTGGGGCCTGGACCAAAAAGACAGACGTTCAGTTCCAAAAACGAATGAATGAA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TGAGTGAACGAACGAACGAAGGATTCAAAAAGGAAGGGTTCCCGCCGCAGAGCATCAGTGTCCCAGCACATCCT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AGGTGTGTTTAGGCCAAAGGCGCGCGGATCGGGAGGGGGATTCGGGCCCGGCCTCCCCTCCCCACTAAATTGGG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GGCGGAGGTGAACCTCCTGGATGGCTGCAGGGCGGGAACCACCCAAATGTAGTTCTCAGCTTCTTTTTCCACGC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  AGGCTGAGTTTTGTGGAAATCGCCCTATTCCCCAGCGCCTACTAGCCTTCTAAATCCCGCCCCCCGAGCCCCAC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  AAGTACCCCGGGATCCCCCGGACTCTTTTGGTCCGGACATCCAGCCTCACAGGAGGCTAGAGAAGAAAGGCTGC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CTGCTCTCCAGCAGCCGCCTCCCGGATCCCCGGTTTTTCCCTAGCTGCGGTGGCAGCCGCCGCCGCCTGTGCGC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CCCGCGCACTGCCGCAAGCCGGGGTGCGGGGAGAGGGGGTTCAGCACGGCCAGGGTGCGGGGATCCGGGCCGGG  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GTTGGGCAGTGGACCGAGGAGACCGGAGCCTGCAGCCAGCGGAGGGGCGAGGAGCGGAGGAGGGACAGGAGGGG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  AGCGGAGGGAGAAAGAGGAGGGGACACGAGGCGAGGGGGCGGGGAGCAGAGGCGAGAGGCAGGCGGACCGTGGG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GGAGGCGACCGGGCTAGGCGGGATCCAGGCAGGAGAGAGGTAGCTGTGGGCCCAGCTGAGTGGGGAGAAGGCGA  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CCAGACTTGCTCGCGCAGGGCGAGCCAGAGCCTGCCGGTGGGGCGGGGCGGGAGGGTGCGAAGCCGGGCGCCTG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GGAGCAGCTCAGCGACCCGGGAGACTGGCCGCCCAACGGAGACCGCAGCCGCCCGCTCTTCGCTCTGGGATGTC  1036

Query    1  --------------------------------------------ATGGGAGGGCACCCGCAGCTCCGTCTCGTC  30
                                                        ||||||..||.||||||||||||.|||||.
Sbjct 1037  GGAGCGATCCTGGCATCCAGGACGCTGACAGAGCGAGCCCGAGGATGGGACAGCGCCCGCAGCTCCGGCTCGTG  1110

Query   31  AAGGCCCTTCTCCTTCTGGGGCTGAACCCCGTCTCTGCCTCCCTCCAGGACCAGCACTGCGAGAGCCTGTCCCT  104
            |||||||||||||||||||||||||||||||||||..|||||||||||||.|||||.||.||||||||||||||
Sbjct 1111  AAGGCCCTTCTCCTTCTGGGGCTGAACCCCGTCTCCACCTCCCTCCAGGATCAGCAGTGTGAGAGCCTGTCCCT  1184

Query  105  GGCCAGCAACATCTCAGGACTGCAGTGCAACGCATCCGTGGACCTCATTGGCACCTGCTGGCCCCGCAGCCCTG  178
            |||||||||..||||.||.|||||||||||.||.||||||||||||||||||||||||||||||.|.|||||||
Sbjct 1185  GGCCAGCAATGTCTCTGGCCTGCAGTGCAATGCCTCCGTGGACCTCATTGGCACCTGCTGGCCCAGGAGCCCTG  1258

Query  179  CGGGGCAGCTAGTGGTTCGGCCCTGCCCTGCCTTTTTCTATGGTGTCCGCTACAATACCACAAACAATGGCTAC  252
            |.||||||.|.|||||||||||||||||||||||||||||.||||||||||||||.||||||||||||||||||
Sbjct 1259  CAGGGCAGTTGGTGGTTCGGCCCTGCCCTGCCTTTTTCTACGGTGTCCGCTACAACACCACAAACAATGGCTAC  1332

Query  253  CGGGAGTGCCTGGCCAATGGCAGCTGGGCCGCCCGCGTGAATTACTCCGAGTGCCAGGAGATCCTCAATGAGGA  326
            |||||.|||||||||||.|||||||||||.|||||.||||||||.||.||||||||||||||.|||||.||.||
Sbjct 1333  CGGGAATGCCTGGCCAACGGCAGCTGGGCAGCCCGTGTGAATTATTCTGAGTGCCAGGAGATTCTCAACGAAGA  1406

Query  327  GAAAAAAAGCAAGGTGCACTACCATGTCGCAGTCATCATCAACTACCTGGGCCACTGTATCTCCCTGGTGGCCC  400
            |||.||.|||||.|||||||||||..|.||.||||||||||||||||||||||||||.||||||||||||||||
Sbjct 1407  GAAGAAGAGCAAAGTGCACTACCACATTGCCGTCATCATCAACTACCTGGGCCACTGCATCTCCCTGGTGGCCC  1480

Query  401  TCCTGGTGGCCTTTGTCCTCTTTCTGCGGCTCAGGAGCATCCGGTGCCTGCGAAACATCATCCACTGGAACCTC  474
            ||||||||||||||||||||||.|||||||||||||||||||||||||||.|.|||||||||||||||||||||
Sbjct 1481  TCCTGGTGGCCTTTGTCCTCTTCCTGCGGCTCAGGAGCATCCGGTGCCTGAGGAACATCATCCACTGGAACCTC  1554

Query  475  ATCTCCGCCTTCATCCTGCGCAACGCCACCTGGTTCGTGGTCCAGCTAACCATGAGCCCCGAGGTCCACCAGAG  548
            |||||.||.||||||||||||||||||||.|||||.|||||||||||.|||.||||||||||||||||||||||
Sbjct 1555  ATCTCGGCTTTCATCCTGCGCAACGCCACGTGGTTTGTGGTCCAGCTCACCGTGAGCCCCGAGGTCCACCAGAG  1628

Query  549  CAACGTGGGCTGGTGCAGGTTGGTGACAGCCGCCTACAACTACTTCCATGTGACCAACTTCTTCTGGATGTTCG  622
            ||||||||.||||||||||.||||||||||||||||||||||||||||.||.||||||||||||||||||||||
Sbjct 1629  CAACGTGGCCTGGTGCAGGCTGGTGACAGCCGCCTACAACTACTTCCACGTAACCAACTTCTTCTGGATGTTCG  1702

Query  623  GCGAGGGCTGCTACCTGCACACAGCCATCGTGCTCACCTACTCCACTGACCGGCTGCGCAAATGGATGTTCATC  696
            |.|||||||||||||||||||||||||||||.|||||.||||||||.|||||.||||||||.|||||||||.||
Sbjct 1703  GTGAGGGCTGCTACCTGCACACAGCCATCGTACTCACGTACTCCACCGACCGTCTGCGCAAGTGGATGTTCGTC  1776

Query  697  TGCATTGGCTGGGGTGTGCCCTTCCCCATCATTGTGGCCTGGGCCATTGGGAAGCTGTACTACGACAATGAGAA  770
            |||||.||||||||||||||.|||||||||||||||||.||||||||||||||.||.||||||||||||||.||
Sbjct 1777  TGCATCGGCTGGGGTGTGCCTTTCCCCATCATTGTGGCTTGGGCCATTGGGAAACTTTACTACGACAATGAAAA  1850

Query  771  GTGCTGGTTTGGCAAAAGGCCTGGGGTGTACACCGACTACATCTACCAGGGCCCCATGATCCTGGTCCTGCTGA  844
            ||||||||||||||||.|.|||||.||.||.||.||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  GTGCTGGTTTGGCAAACGTCCTGGAGTATATACTGACTACATCTACCAGGGCCCCATGATCCTGGTCCTGCTGA  1924

Query  845  TCAATTTCATCTTCCTTTTCAACATCGTCCGCATCCTCATGACCAAGCTCCGGGCATCCACCACGTCTGAGACC  918
            ||||.||.|||||.||.||||||||.||||||||||||||||||||.|||||.|||||||||||.||||||||.
Sbjct 1925  TCAACTTTATCTTTCTCTTCAACATTGTCCGCATCCTCATGACCAAACTCCGAGCATCCACCACATCTGAGACT  1998

Query  919  ATTCAGTACAGGAAGGCTGTGAAAGCCACTCTGGTGCTGCTGCCCCTCCTGGGCATCACCTACATGCTGTTCTT  992
            |||||||||    ||||||||||.||||||||||||||..||||||||||||||||||||||||||.|||||||
Sbjct 1999  ATTCAGTAC----AGGCTGTGAAGGCCACTCTGGTGCTCTTGCCCCTCCTGGGCATCACCTACATGTTGTTCTT  2068

Query  993  CGTCAATCCCGGGGAGGATGAGGTCTCCCGGGTCGTCTTCATCTACTTCAACTCCTTCCTGGAATCCTTCCAGG  1066
            ||||||.||.||||||||.|||||||||.||||.||||||||||||||||||||.||||||||.|||||.||||
Sbjct 2069  CGTCAACCCTGGGGAGGACGAGGTCTCCAGGGTTGTCTTCATCTACTTCAACTCTTTCCTGGAGTCCTTTCAGG  2142

Query 1067  GCTTCTTTGTGTCTGTGTTCTACTGTTTCCTCAATAGTGAGGTCCGTTCTGCCATCCGGAAGAGGTGGCACCGG  1140
            |||||||.||||||||||||||.|||||.||.||.|||||||||||.||||||||||||||||||||||..||.
Sbjct 2143  GCTTCTTCGTGTCTGTGTTCTATTGTTTTCTGAACAGTGAGGTCCGCTCTGCCATCCGGAAGAGGTGGCGGCGA  2216

Query 1141  TGGCAGGACAAGCACTCGATCCGTGCCCGAGTGGCCCGTGCCATGTCCATCCCCACCTCCCCAACCCGTGTCAG  1214
            |||||||||||||||||.|||.|.||||||||||||||.|||||||||||||||||||||||.|||.|.|||||
Sbjct 2217  TGGCAGGACAAGCACTCCATCAGAGCCCGAGTGGCCCGCGCCATGTCCATCCCCACCTCCCCCACCAGAGTCAG  2290

Query 1215  CTTTCACAGCATCAAGCAGTCCACAGCAGTC-------------------------------------------  1245
            |||.||||||||||||||||||||||||||.                                           
Sbjct 2291  CTTCCACAGCATCAAGCAGTCCACAGCAGTGTGAACCTCAGGCCACAGAGCAGCCCCCAAGACCCGAGGCTGGG  2364

Query 1246  --------------------------------------------------------------------------  1245
                                                                                      
Sbjct 2365  GAAATGATGCAAGCTCACTAGCGAGCCTGTCTGCAGAGGCAGGCAGCCTTCCCATCCCTGCCCCTGGGATGCAG  2438

Query 1246  --------------------------------------------------------------------------  1245
                                                                                      
Sbjct 2439  ACCTGTAAGCCTGCCCAGCCGTGGACAAAGCCCATAGCACTGGGGTGGGCCCTTGGCATCTAGCTCCCTGCTGC  2512

Query 1246  --------------------------------------------------------------------------  1245
                                                                                      
Sbjct 2513  CCATTCTCCCTGGGAAGTTGAAATGGGCATTGGGGGCTGGAAACCCTGCAGCAGTTTGATGGGCCTGTGAGCGC  2586

Query 1246  --------------------------------------------------------------------------  1245
                                                                                      
Sbjct 2587  TGTCTTCTCCCAGAGCAGCTTACTGAAGATCTGTCGTCTTCAGGAGCTGTTGGGGAGGCCAACTGTTACCCTGG  2660

Query 1246  --------------------------------------------------------------------------  1245
                                                                                      
Sbjct 2661  GGCATCATGGAAAACTCCCTTCTGAGACTGTAAAGTCTCTGAGTGTTAGCGATGCCTTGGGATGCTACCGAGGA  2734

Query 1246  --------------------------------------------------------------------------  1245
                                                                                      
Sbjct 2735  CCAACATGGTCCAGTCAGGAGACCGGGAGATAGCGGTAGAAATCTGGGAACGTCATCAGATGGCACTCCACCTC  2808

Query 1246  --------------------------------------------------------------------------  1245
                                                                                      
Sbjct 2809  CCTACAAGTCACTCCTGAGCCACCAGGATTTCATCAGCACTGTGGCACTGCCACTGGAAAGCCCTGCCTTGCTG  2882

Query 1246  --------------------------------------------------------------------------  1245
                                                                                      
Sbjct 2883  CTTTGCTGCCCTGCACCTTTAGACATTTACTATTCTGCAGGCCAAGCCAGCTTTCTGTCACTTATCCACTGACA  2956

Query 1246  --------------------------------------------------------------------------  1245
                                                                                      
Sbjct 2957  GCAACGGTCCCCTCGCCCCCAAATCCTCCCACCTCTGGGTATCTTCTAACCTGTGAGAAGATGGGGGTCGGGAA  3030

Query 1246  --------------------------------------------------------------------------  1245
                                                                                      
Sbjct 3031  GGGGACTTGAGTTGCCAGGAACCAGAGTGGGCCCAGTCTATGAGGAAGGAGTGGCCCCTGGGTACCCAGGCCAC  3104

Query 1246  --------------------------------------------------------------------------  1245
                                                                                      
Sbjct 3105  TGGCTTCAGTGGCTGGCCTCTTGAACACAGTCACAAGCTGGGGGAAGGATCTATTCAAGTGCCCTGACCAGCGA  3178

Query 1246  --------------------------------------------------------------------------  1245
                                                                                      
Sbjct 3179  CAGGTGGCTCCTGGGACAACTAACTAACTAAGCCCTTGCTCCCAGGCTTGGAATGGCCCAGTCCTCAGTGGGTA  3252

Query 1246  -------------------------------------------------------------------  1245
                                                                               
Sbjct 3253  GGAGAGCTGAGGAGCCGCAGCAGGACTGAGGTGGGGGTGATATAAATAATATTTATCTTTTCAACTA  3319

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