Nucleotide Global Alignment

Description

Query:
TRCN0000489123
Subject:
NM_001310456.1
Aligned Length:
1500
Identities:
1246
Gaps:
129

Alignment

Query    1  ----------ATGGATCGGATGAAGAAGATCAAACGGCAGCTGTCAATGACACTCCGAGGTGGCCGAGGCATAG  64
                      ||||||..|||||||||                                           |||.
Sbjct    1  ATGTACACAAATGGATACGATGAAGAA-------------------------------------------ATAT  31

Query   65  ACAAGACCAATGGTGCCCCTGAGCAGATAGGCCTGGATGAGAGTGGTGGTGGTGGCGGCAGTGACCCTGGAGAG  138
            |..|   .|.|||.|                   |.|.|||||||.|                   ||.||   
Sbjct   32  ATTA---TATTGGGG-------------------GAAAGAGAGTGTT-------------------CTTGA---  61

Query  139  GCCCCCACACGTGCTGCTCCTGGGGAAC--TTCGTTCTGCACGGGGCCCACTCAGCTCTGCACCAGAGATTGTG  210
              |.|||.|.|       |||||    |  |||..|||       .||||          |.||||||||||||
Sbjct   62  --CTCCAAAGG-------CCTGG----CCTTTCCCTCT-------CCCCA----------CCCCAGAGATTGTG  105

Query  211  CACGAGGACTTGAAGATGGGGTCTGATGGGGAGAGTGACCAGGCTTCAGCCACGTCCTCGGATGAGGTGCAGTC  284
            |||||||||.||||||||||.||||||||||||||||||||||||||||||||.|||||.||||||||||||||
Sbjct  106  CACGAGGACATGAAGATGGGATCTGATGGGGAGAGTGACCAGGCTTCAGCCACATCCTCAGATGAGGTGCAGTC  179

Query  285  TCCAGTGAGAGTGCGTATGCGCAACCATCCCCCACGCAAGATCTCCACTGAGGACATCAACAAGCGCCTATCAC  358
            |||||||||||||||.|||||||||||.|||||||||||||||||||||||||||||||||||.|||||.||||
Sbjct  180  TCCAGTGAGAGTGCGCATGCGCAACCACCCCCCACGCAAGATCTCCACTGAGGACATCAACAAACGCCTGTCAC  253

Query  359  TACCAGCTGACATCCGGCTGCCTGAGGGCTACCTGGAGAAGCTGACCCTCAATAGCCCCATCTTTGACAAGCCC  432
            |||||||||||||.||||||||||||||||||||.||||||||||||||||||||||||||||||||.|||||.
Sbjct  254  TACCAGCTGACATACGGCTGCCTGAGGGCTACCTTGAGAAGCTGACCCTCAATAGCCCCATCTTTGATAAGCCT  327

Query  433  CTCAGCCGCCGCCTCCGTCGTGTCAGCCTATCTGAGATTGGCTTTGGGAAACTGGAGACCTACATTAAGCTGGA  506
            ||.|||||.||||||||.||.|||||..|.|||||||||||||||||.|||||||||||||||||.|||||.||
Sbjct  328  CTTAGCCGGCGCCTCCGCCGAGTCAGTTTGTCTGAGATTGGCTTTGGAAAACTGGAGACCTACATCAAGCTAGA  401

Query  507  CAAACTGGGCGAGGGTACCTATGCCACCGTCTACAAAGGCAAAAGCAAGCTCACAGACAACCTTGTGGCACTCA  580
            |||.|||||.|||||||||||||||||.||||||||||||||||||||||||||||||||||||||.|||||.|
Sbjct  402  CAAGCTGGGTGAGGGTACCTATGCCACTGTCTACAAAGGCAAAAGCAAGCTCACAGACAACCTTGTAGCACTTA  475

Query  581  AGGAGATCAGACTGGAACATGAAGAGGGGGCACCCTGCACCGCCATCCGGGAAGTGTCCCTACTCAAGGACCTC  654
            |||||||||||||||||||.|||||.|||||||||||.||.||.|||||||||||.|||||.||.|||||||||
Sbjct  476  AGGAGATCAGACTGGAACACGAAGAAGGGGCACCCTGTACTGCTATCCGGGAAGTATCCCTGCTTAAGGACCTC  549

Query  655  AAACACGCCAACATCGTTACGCTACATGACATTATCCACACGGAGAAGTCCCTCACCCTTGTCTTTGAGTACCT  728
            ||.||.|||||||||||.||.||||||||||||||||||||.||||||||||||||.|||||||||||.|||.|
Sbjct  550  AAGCATGCCAACATCGTCACACTACATGACATTATCCACACAGAGAAGTCCCTCACACTTGTCTTTGAATACTT  623

Query  729  GGACAAGGACCTGAAGCAGTACCTGGATGACTGTGGGAACATCATCAACATGCACAACGTGAAACTGTTCCTGT  802
            ||||||||||||||||||||||||||||||||||||.||..||||||||||||||||.||||||||||||||||
Sbjct  624  GGACAAGGACCTGAAGCAGTACCTGGATGACTGTGGAAATGTCATCAACATGCACAATGTGAAACTGTTCCTGT  697

Query  803  TCCAGCTGCTCCGTGGCCTGGCCTACTGCCACCGGCAGAAGGTGCTACACCGAGACCTCAAGCCCCAGAACCTG  876
            |||||.||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||.
Sbjct  698  TCCAGTTGCTCCGTGGCCTGGCCTACTGCCACAGGCAGAAGGTGCTACACCGAGACCTCAAGCCCCAGAACCTA  771

Query  877  CTCATCAACGAGAGGGGAGAGCTCAAGCTGGCTGACTTTGGCCTGGCCCGAGCCAAGTCAATCCCAACAAAGAC  950
            ||||||||||||||||||||||||||.|||||.||.|||||||||||.||.|||||||||||.||.||.||.||
Sbjct  772  CTCATCAACGAGAGGGGAGAGCTCAAACTGGCAGATTTTGGCCTGGCTCGTGCCAAGTCAATTCCTACTAAAAC  845

Query  951  ATACTCCAATGAGGTGGTGACACTGTGGTACCGGCCCCCTGACATCCTGCTTGGGTCCACGGACTACTCCACTC  1024
            |||||||||.||.|||||||||||||||||||||||||||||||||||.|||||||||||.||||||||.||.|
Sbjct  846  ATACTCCAACGAAGTGGTGACACTGTGGTACCGGCCCCCTGACATCCTACTTGGGTCCACAGACTACTCTACCC  919

Query 1025  AGATTGACATGTGGGGTGTGGGCTGCATCTTCTATGAGATGGCCACAGGCCGTCCCCTCTTTCCGGGCTCCACG  1098
            |.|||||||||||||||||.||||||||||||||||||||||||||.|||||.||||||||.||.||||||||.
Sbjct  920  AAATTGACATGTGGGGTGTAGGCTGCATCTTCTATGAGATGGCCACCGGCCGGCCCCTCTTCCCAGGCTCCACA  993

Query 1099  GTGGAGGAACAGCTACACTTCATCTTCCGTATCTTAGGAACCCCAACTGAGGAGACGTGGCCAGGCATCCTGTC  1172
            |||||.||||||||.||||||||||||||.||.||.||||||||||||||||||||.||||||||.||||||||
Sbjct  994  GTGGAAGAACAGCTGCACTTCATCTTCCGCATTTTGGGAACCCCAACTGAGGAGACATGGCCAGGTATCCTGTC  1067

Query 1173  CAACGAGGAGTTCAAGACATACAACTACCCCAAGTACCGAGCCGAGGCCCTTTTGAGCCACGCACCCCGACTTG  1246
            |||.||||||||.|..||||||||||||||||||||||||||||||||||||.|||||||.|||||||||||||
Sbjct 1068  CAATGAGGAGTTTAGAACATACAACTACCCCAAGTACCGAGCCGAGGCCCTTCTGAGCCATGCACCCCGACTTG  1141

Query 1247  ATAGCGACGGGGCCGACCTCCTCACCAAGCTGTTGCAGTTTGAGGGTCGAAATCGGATCTCCGCAGAGGATGCC  1320
            |||||||.||.||.||||||||||||||||||.||||||||||||||||.|||||||||||.||.|||||||||
Sbjct 1142  ATAGCGATGGAGCTGACCTCCTCACCAAGCTGCTGCAGTTTGAGGGTCGCAATCGGATCTCTGCTGAGGATGCC  1215

Query 1321  ATGAAACATCCATTCTTCCTCAGTCTGGGGGAGCGGATCCACAAACTTCCTGACACTACTTCCATATTTGCACT  1394
            |.|||||||||||||||.|||||..|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1216  AGGAAACATCCATTCTTTCTCAGCTTGGGGGAGCGGATCCACAAACTTCCTGACACTACTTCCATATTTGCACT  1289

Query 1395  AAAGGAGATTCAGCTACAAAAGGAGGCCAGCCTTCGGTCTTCGTCGATGCCTGACTCAGGCAGGCCAGCTTTCC  1468
            |||||||.|.|||||||||||||||||||.|.|||||||..|.||.||||||||||||||||||||||||||||
Sbjct 1290  AAAGGAGGTACAGCTACAAAAGGAGGCCAACATTCGGTCCACTTCTATGCCTGACTCAGGCAGGCCAGCTTTCC  1363

Query 1469  GCGTGGTGGACACCGAGTTC  1488
            |.||||||||.|||||||||
Sbjct 1364  GTGTGGTGGATACCGAGTTC  1383

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.