Construct: ORF TRCN0000489123
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF020245.1_s317c1
- DNA Barcode:
- TGATCAGTTCGAGGTAGGCTTTCC
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Has stop codon in insert
Originally Annotated References:
- Gene:
- CDK16 (5127)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000489123
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 5127 | CDK16 | cyclin dependent kinase 16 | NM_006201.5 | 99.9% | 100% | 642G>A |
| 2 | human | 5127 | CDK16 | cyclin dependent kinase 16 | XM_017029570.2 | 99.9% | 100% | 642G>A |
| 3 | human | 5127 | CDK16 | cyclin dependent kinase 16 | XM_017029571.1 | 99.9% | 100% | 642G>A |
| 4 | human | 5127 | CDK16 | cyclin dependent kinase 16 | XM_017029572.2 | 99.9% | 100% | 642G>A |
| 5 | human | 5127 | CDK16 | cyclin dependent kinase 16 | XM_017029573.1 | 99.9% | 100% | 642G>A |
| 6 | human | 5127 | CDK16 | cyclin dependent kinase 16 | NM_033018.4 | 98.7% | 98.8% | 1_18del;660G>A |
| 7 | human | 5127 | CDK16 | cyclin dependent kinase 16 | XM_011543924.2 | 97.4% | 96.8% | (many diffs) |
| 8 | human | 5127 | CDK16 | cyclin dependent kinase 16 | XM_011543925.3 | 97.4% | 96.8% | (many diffs) |
| 9 | human | 5127 | CDK16 | cyclin dependent kinase 16 | XM_011543926.1 | 97.4% | 96.8% | (many diffs) |
| 10 | human | 5127 | CDK16 | cyclin dependent kinase 16 | XM_011543927.3 | 97.4% | 96.8% | (many diffs) |
| 11 | human | 5127 | CDK16 | cyclin dependent kinase 16 | XM_011543928.1 | 97.4% | 96.8% | (many diffs) |
| 12 | human | 5127 | CDK16 | cyclin dependent kinase 16 | XM_011543923.2 | 96.3% | 95.6% | (many diffs) |
| 13 | human | 5127 | CDK16 | cyclin dependent kinase 16 | XM_017029569.1 | 91.2% | 91.3% | 1_141del;783G>A |
| 14 | human | 5127 | CDK16 | cyclin dependent kinase 16 | XM_011543922.1 | 89.7% | 89.1% | (many diffs) |
| 15 | human | 5127 | CDK16 | cyclin dependent kinase 16 | XM_011543921.1 | 89.1% | 88.5% | (many diffs) |
| 16 | human | 5127 | CDK16 | cyclin dependent kinase 16 | NM_001170460.1 | 86.9% | 87% | 1_222del;864G>A |
| 17 | human | 5127 | CDK16 | cyclin dependent kinase 16 | XM_011543920.3 | 84.9% | 84.3% | (many diffs) |
| 18 | human | 5127 | CDK16 | cyclin dependent kinase 16 | XR_949017.3 | 44.7% | (many diffs) | |
| 19 | mouse | 18555 | Cdk16 | cyclin-dependent kinase 16 | NM_011049.5 | 91.8% | 97.5% | (many diffs) |
| 20 | mouse | 18555 | Cdk16 | cyclin-dependent kinase 16 | XM_006527570.1 | 91.8% | 97.5% | (many diffs) |
| 21 | mouse | 18555 | Cdk16 | cyclin-dependent kinase 16 | XM_017318424.1 | 90.3% | 94.6% | (many diffs) |
| 22 | mouse | 18555 | Cdk16 | cyclin-dependent kinase 16 | NM_001310456.1 | 83% | 87.2% | (many diffs) |
| 23 | mouse | 18555 | Cdk16 | cyclin-dependent kinase 16 | XM_017318425.1 | 83% | 87.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 72
- ORF end:
- 1560
- ORF length:
- 1488
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcttcac catggatcgg atgaagaaga tcaaacggca gctgtcaatg acactccgag 121 gtggccgagg catagacaag accaatggtg cccctgagca gataggcctg gatgagagtg 181 gtggtggtgg cggcagtgac cctggagagg cccccacacg tgctgctcct ggggaacttc 241 gttctgcacg gggcccactc agctctgcac cagagattgt gcacgaggac ttgaagatgg 301 ggtctgatgg ggagagtgac caggcttcag ccacgtcctc ggatgaggtg cagtctccag 361 tgagagtgcg tatgcgcaac catcccccac gcaagatctc cactgaggac atcaacaagc 421 gcctatcact accagctgac atccggctgc ctgagggcta cctggagaag ctgaccctca 481 atagccccat ctttgacaag cccctcagcc gccgcctccg tcgtgtcagc ctatctgaga 541 ttggctttgg gaaactggag acctacatta agctggacaa actgggcgag ggtacctatg 601 ccaccgtcta caaaggcaaa agcaagctca cagacaacct tgtggcactc aaggagatca 661 gactggaaca tgaagagggg gcaccctgca ccgccatccg ggaagtgtcc ctactcaagg 721 acctcaaaca cgccaacatc gttacgctac atgacattat ccacacggag aagtccctca 781 cccttgtctt tgagtacctg gacaaggacc tgaagcagta cctggatgac tgtgggaaca 841 tcatcaacat gcacaacgtg aaactgttcc tgttccagct gctccgtggc ctggcctact 901 gccaccggca gaaggtgcta caccgagacc tcaagcccca gaacctgctc atcaacgaga 961 ggggagagct caagctggct gactttggcc tggcccgagc caagtcaatc ccaacaaaga 1021 catactccaa tgaggtggtg acactgtggt accggccccc tgacatcctg cttgggtcca 1081 cggactactc cactcagatt gacatgtggg gtgtgggctg catcttctat gagatggcca 1141 caggccgtcc cctctttccg ggctccacgg tggaggaaca gctacacttc atcTTCCGTA 1201 TCTTAGGAAC CCCAACTGAG GAGACGTGGC CAGGCATCCT GTCCAACGAG GAGTTCAAGA 1261 CATACAACTA CCCCAAGTAC CGAGCCGAGG CCCTTTTGAG CCACGCACCC CGACTTGATA 1321 GCGACGGGGC CGACCTCCTC ACCAAGCTGT TGCAGTTTGA GGGTCGAAAT CGGATCTCCG 1381 CAGAGGATGC CATGAAACAT CCATTCTTCC TCAGTCTGGG GGAGCGGATC CACAAACTTC 1441 CTGACACTAC TTCCATATTT GCACTAAAGG AGATTCAGCT ACAAAAGGAG GCCAGCCTTC 1501 GGTCTTCGTC GATGCCTGAC TCAGGCAGGC CAGCTTTCCG CGTGGTGGAC ACCGAGTTCT 1561 GAGACCCAGC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA GCCTATCCCT AACCCTCTCC 1621 TCGGTCTCGA TTCTACGTAG TAATGAACTA GTCCGTAACT TGAAAGTATT TCGATTTCTT 1681 GGCTTTATAT ATCTTGTGGA AAGGACGATG ATCAGTTCGA GGTAGGCTTT CCACGCGTTA 1741 AGTCgacaat caacctctgg attacaaaat ttgtgaaaga tt