Nucleotide Global Alignment
Description
- Query:
- TRCN0000489356
- Subject:
- XR_001784730.1
- Aligned Length:
- 4476
- Identities:
- 2557
- Gaps:
- 1618
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TGTCTCGCGGCCTCGCGCTCGCTCGCTCGCCGCGCTCTCCGGCCCCAGCTCCGGGCCGCTCGTGCAGGCGCGCG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CGCGCGGGGCGCCGGGGCCTGAGGCGGCGGGCGACGCCCGGGGGGCGGGTGGGGGCCGAGGGAGGACCGCCAAG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CCATGGTGTGAGCTCCGCGGCCAGCGCTCTCCGCGCCGCGCTCCGCTCCGACCGGACGACAAGCCGCCCGGGCG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GCGGCGGCCTGCCCGTGCGGCCCGAGCCCCGGCGCCGCCGAGCCCCTGCCCGTCTCTCGCTCTCTCGCCCGCTC 296
Query 1 ----------------------ATGGCGAACGACTCCCCTGCAAAAAGTCTGGTGGACATCGACCTCTCCTCCC 52
||||||||||||||.||.||.||.||.|||||||||||.|||||.||.||||
Sbjct 297 CCGGAGCGGCGACCCGGGGAAGATGGCGAACGACTCTCCCGCGAAGAGCCTGGTGGACATTGACCTGTCGTCCC 370
Query 53 TGCGGGATCCTGCTGGGATTTTTGAGCTGGTGGAAGTGGTTGGAAATGGCACCTATGGACAAGTCTATAAGGGT 126
|||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TGCGGGACCCTGCTGGGATTTTTGAGCTGGTGGAAGTGGTTGGAAATGGCACCTATGGACAAGTCTATAAGGGT 444
Query 127 CGACATGTTAAAACGGGTCAGTTGGCAGCCATCAGAGTTATGGATGTCACTGAGGATGAAGAGGAAGAAATCAA 200
|||||||||||||||||||||.||||.|||||||..||||||||.|||||.|||||||||||||||||||||||
Sbjct 445 CGACATGTTAAAACGGGTCAGCTGGCCGCCATCAAGGTTATGGACGTCACCGAGGATGAAGAGGAAGAAATCAA 518
Query 201 ACTGGAGATAAATATGCTAAAGAAATACTCTCATCACAGAAACATTGCAACATATTATGGTGCTTTCATCAAAA 274
||||||||||||||||||.|||||.||.||||||||..||||.|||||.||.||.||||||||||||||.||.|
Sbjct 519 ACTGGAGATAAATATGCTGAAGAAGTATTCTCATCATCGAAATATTGCCACGTACTATGGTGCTTTCATTAAGA 592
Query 275 AGAGCCCTCCAGGACATGATGACCAACTCTGGCTTGTTATGGAGTTCTGTGGGGCTGGGTCCATTACAGACCTT 348
||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||.|||||||||
Sbjct 593 AGAGCCCTCCAGGACATGATGACCAACTCTGGCTTGTTATGGAGTTTTGTGGGGCTGGGTCCATCACAGACCTT 666
Query 349 GTGAAGAACACCAAAGGGAACACACTCAAAGAAGACTGGATCGCTTACATCTCCAGAGAAATCCTGAGGGGACT 422
|||||||||||||||||||||||.|||||||||||||||||.||||||||||||||.||||||||.||||||.|
Sbjct 667 GTGAAGAACACCAAAGGGAACACTCTCAAAGAAGACTGGATTGCTTACATCTCCAGGGAAATCCTCAGGGGATT 740
Query 423 GGCACATCTTCACATTCATCATGTGATTCACCGGGATATCAAGGGCCAGAATGTGTTGCTGACTGAGAATGCAG 496
|||||||||.||.|||||.||.||.||||||||.||||||||||||||.||||||.|||||||.||||||||.|
Sbjct 741 GGCACATCTCCATATTCACCACGTTATTCACCGAGATATCAAGGGCCAAAATGTGCTGCTGACCGAGAATGCTG 814
Query 497 AGGTGAAACTTGTTGACTTTGGTGTGAGTGCTCAGCTGGACAGGACTGTGGGGCGGAGAAATACGTTCATAGGC 570
||||||||||||||||.||||||||.||.|||||||||||||||||.||.||.|||||||||||||||||||||
Sbjct 815 AGGTGAAACTTGTTGATTTTGGTGTAAGCGCTCAGCTGGACAGGACGGTTGGACGGAGAAATACGTTCATAGGC 888
Query 571 ACTCCCTACTGGATGGCTCCTGAGGTCATCGCCTGTGATGAGAACCCAGATGCCACCTATGATTACAGAAGTGA 644
||.|||||||||||||||||.|||||||||||||||||||||||||||||.|||||.||.||.|||||||||||
Sbjct 889 ACACCCTACTGGATGGCTCCAGAGGTCATCGCCTGTGATGAGAACCCAGACGCCACTTACGACTACAGAAGTGA 962
Query 645 TCTTTGGTCTTGTGGCATTACAGCCATTGAGATGGCAGAAGGTGCTCCCCCTCTCTGTGACATGCATCCAATGA 718
.||.|||||.||||||||.||||||||.||||||||.|||||.||.||||||||||||||||||||||||||||
Sbjct 963 CCTCTGGTCCTGTGGCATCACAGCCATCGAGATGGCTGAAGGGGCCCCCCCTCTCTGTGACATGCATCCAATGA 1036
Query 719 GAGCACTGTTTCTCATTCCCAGAAACCCTCCTCCCCGGCTGAAGTCAAAAAAATGGTCGAAGAAGTTTTTTAGT 792
||||.|||||||||||.||||||||||||||||||.||||||||||||||||||||||.|||||.|||||.||.
Sbjct 1037 GAGCGCTGTTTCTCATCCCCAGAAACCCTCCTCCCAGGCTGAAGTCAAAAAAATGGTCAAAGAAATTTTTCAGC 1110
Query 793 TTTATAGAAGGGTGCCTGGTGAAGAATTACATGCAGCGGCCCTCTACAGAGCAGCTTTTGAAACATCCTTTTAT 866
|||||||||||.||.||||||||||||||||||||||||||||||||||||||.|||||.|||||.|||||.||
Sbjct 1111 TTTATAGAAGGCTGTCTGGTGAAGAATTACATGCAGCGGCCCTCTACAGAGCAACTTTTAAAACACCCTTTCAT 1184
Query 867 AAGGGATCAGCCAAATGAAAGGCAAGTTAGAATCCAGCTTAAGGATCATATAGATCGTACCAGGAAGAAGAGAG 940
||||||||||||.|||||||||||.|||.|||||||||||||||||||.|||||.||.|||||.||||||||||
Sbjct 1185 AAGGGATCAGCCCAATGAAAGGCAGGTTCGAATCCAGCTTAAGGATCACATAGACCGGACCAGAAAGAAGAGAG 1258
Query 941 GCGAGAAAGATGAAACTGAGTATGAGTACAGTGGGAGTGAGGAAGAAGAGGAGGAAGTGCCTGAACAGGAAGGA 1014
|||||||||||||.||.|||||.||||||||.|||||.|||||.||.|||||||||||||||||.|||||.|||
Sbjct 1259 GCGAGAAAGATGAGACGGAGTACGAGTACAGCGGGAGCGAGGAGGAGGAGGAGGAAGTGCCTGAGCAGGAGGGA 1332
Query 1015 GAGCCAAGTTCCATTGTGAACGTGCCTGGTGAGTCTACTCTTCGCCGAGATTTCCTGAGACTGCAGCAGGAGAA 1088
||||||||||||||.||.||.||||||||.|||||.|||||.||.||.||||||||||||||||||||||||||
Sbjct 1333 GAGCCAAGTTCCATCGTCAATGTGCCTGGAGAGTCAACTCTGCGACGTGATTTCCTGAGACTGCAGCAGGAGAA 1406
Query 1089 CAAGGAACGTTCCGAGGCTCTTCGGAGACAACAGTTACTACAGGAGCAACAGCTCCGGGAGCAGGAAGAATATA 1162
||||||.||.||.||||||||.||||||||.|||.|.||.||||||||.|||||||||||||||||.||.||||
Sbjct 1407 CAAGGAGCGGTCTGAGGCTCTGCGGAGACAGCAGCTTCTGCAGGAGCAGCAGCTCCGGGAGCAGGAGGAGTATA 1480
Query 1163 AAAGGCAACTGCTGGCAGAGAGACAGAAGCGGATTGAGCAGCAGAAAGAACAGAGGCGACGGCTAGAAGAGCAA 1236
|.|||||.||||||||.|||||.||||||||||||||.||||||||||||||||||.|.|||||.|||||||||
Sbjct 1481 AGAGGCAGCTGCTGGCTGAGAGGCAGAAGCGGATTGAACAGCAGAAAGAACAGAGGAGGCGGCTGGAAGAGCAA 1554
Query 1237 CAAAGGAGAGAGCGGGAAGCTAGAAGGCAGCAGGAACGTGAACAGCGAAGGAGAGAACAAGAAGAAAAGAGGCG 1310
|||||.|||||.||||||||.||.|||||||||||.|||||.|||||..||.|.||||||||.||.||||||||
Sbjct 1555 CAAAGAAGAGAACGGGAAGCCAGGAGGCAGCAGGAGCGTGAGCAGCGGCGGCGTGAACAAGAGGAGAAGAGGCG 1628
Query 1311 TCTAGAGGAGTTGGAGAGAAGGCGCAAAGAAGAAGAGGAGAGGAGACGGGCAGAAGAAGAAAAGAGGAGAGTTG 1384
|||.|||||..||||.||..||||.||||||||.||.||||||||||||||||||||.||.|||||||||||.|
Sbjct 1629 TCTCGAGGAACTGGAAAGGCGGCGTAAAGAAGAGGAAGAGAGGAGACGGGCAGAAGAGGAGAAGAGGAGAGTGG 1702
Query 1385 AAAGAGAACAGGAGTATATCAGGCGACAGCTAGAAGAGGAGCAGCGGCACTTGGAAGTCCTTCAGCAGCAGCTG 1458
|.||.|||||||||||.||||||||.||||||||.|||||||||||||||.||||..||||.||||||||||||
Sbjct 1703 AGAGGGAACAGGAGTACATCAGGCGGCAGCTAGAGGAGGAGCAGCGGCACCTGGAGATCCTGCAGCAGCAGCTG 1776
Query 1459 CTCCAGGAGCAGGCCATGTTACTGGAGTGCCGATGGCGGGAGATGGAGGAGCACCGGCAGGCAGAGAGGCTCCA 1532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 CTCCAGGAGCAGGCCATGTTACTGGAGTGCCGATGGCGGGAGATGGAGGAGCACCGGCAGGCAGAGAGGCTCCA 1850
Query 1533 GAGGCAGTTGCAACAAGAACAAGCATATCTCCTGTCTCTACAGCATGACCATAGGAGGCCGCACCCGCAGCACT 1606
|||||||||||||||||||||||||||||||||||||||||||||.|||||.||||||||||||.|.|||||
Sbjct 1851 GAGGCAGTTGCAACAAGAACAAGCATATCTCCTGTCTCTACAGCACGACCACAGGAGGCCGCACGCACAGCA-- 1922
Query 1607 CGCAGCAGCCGCCACCACCGCAGCAGGAAAGGAGCAAGCCAAGCTTCCATGCTCCCGAGCCCAAAGCC-CACTA 1679
|||||.||||||.||.|.|||||||||.||||||||.||.|||||.||||||||.|||||| ||||| |||||
Sbjct 1923 -GCAGCCGCCGCCCCCGCAGCAGCAGGACAGGAGCAAACCGAGCTTTCATGCTCCAGAGCCC-AAGCCTCACTA 1994
Query 1680 CGAGCCTGCTGACCGAGCGCGAGA-------------------------------------------------- 1703
.||.|||||||||.||||.||.||
Sbjct 1995 TGACCCTGCTGACAGAGCTCGGGAGGTGGAAGATAGATTTAGAAAGACTAACCACAGCTCCCCTGAGGCCCAGG 2068
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 2069 CTAAGCAAACGGGCAGAGGACTGGAGCCACCCGTGCCTTCCCGGTCAGAGTCTTTTTCCAATGGCAACTCCGAG 2142
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 2143 TCTGTGCACCCTGCCCTGCAGAGACCAGCGGAGCCACAGGTACAGTGGTCCCACCTGGCATCTCTCAAGAACAA 2216
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 2217 TGTCTCCCCTGTCTCGAGATCCCATTCCTTCAGTGACCCTTCTCCCAAATTCGCACACCACCATCTCCGCTCTC 2290
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 2291 AGGACCCATGTCCACCTTCCCGCAGTGAGGGGCTCAGTCAGAGCTCTGACTCTAAGTCGGAGGTGCCCGAGCCC 2364
Query 1704 -----------------------------------------------GGTTCCTGTGAGAACAACATCTCGCTC 1730
||||||.||||||||.||.|||||.||
Sbjct 2365 ACCCAAAAGGCTTGGTCTAGATCAGACAGTGACGAGGTGCCTCCAAGGGTTCCCGTGAGAACGACCTCTCGTTC 2438
Query 1731 CCCTGTTCTGTCCCGTCGAGATTCCCCACTGCAGGGCAGTGGGCAGCAGAATAGCCAGGCAGGACAGAGAAACT 1804
||||||.||.||||||||.||||||||||||||||||.||||.||||||||||||||.||||||||||||||.|
Sbjct 2439 CCCTGTCCTCTCCCGTCGGGATTCCCCACTGCAGGGCGGTGGACAGCAGAATAGCCAAGCAGGACAGAGAAATT 2512
Query 1805 CCACCAGCAGTATTGAGCCCAGGCTTCTGTGGGAGAGAGTGGAGAAGCTGGTGCCCAGACCTGGCAGTGGCAGC 1878
||||||||||||||||||||.|||||||.||||||||||||||.||||||||.|||||.||.||||||||||||
Sbjct 2513 CCACCAGCAGTATTGAGCCCCGGCTTCTTTGGGAGAGAGTGGAAAAGCTGGTCCCCAGGCCAGGCAGTGGCAGC 2586
Query 1879 TCCTCAGGGTCCAGCAACTCAGGATCCCAGCCCGGGTCTCACCCTGGGTCTCAGAGTGGCTCCGGGGAACGCTT 1952
||.|||||||||||||||||||||||||||||.||.||.||.||||||||||||||.||||||||.||||||||
Sbjct 2587 TCTTCAGGGTCCAGCAACTCAGGATCCCAGCCTGGCTCCCATCCTGGGTCTCAGAGCGGCTCCGGTGAACGCTT 2660
Query 1953 CAGAGTGAGATCATCATCCAAGTCTGAAGGCTCTCCATCTCAGCGCCTGGAAAATGCAGTGAAAAAACCTGAAG 2026
||||||||||||||||||||||||||||||.||||||||.|..||||.|||||.|||||..|||||.|||||.|
Sbjct 2661 CAGAGTGAGATCATCATCCAAGTCTGAAGGTTCTCCATCGCCACGCCAGGAAAGTGCAGCCAAAAAGCCTGACG 2734
Query 2027 ATAAAAAGGAAGTTTTCAGACCCCTCAAGCCTGC---------TGATCTGACCGCACTGGCCAAAGAGCTTCGA 2091
||||.||.|||||.|||.|.||.||||||||||| .||..||||.||..|||||||||||||||||
Sbjct 2735 ATAAGAAAGAAGTATTCCGGCCTCTCAAGCCTGCGGGAGAAGTGGACTTGACTGCGTTGGCCAAAGAGCTTCGA 2808
Query 2092 GCAGTGGAAGATGTACGGCCACCTCACAAAGTAACGGACTACTCCTCATCCAGTGAGGAGTCGGGGACGACGGA 2165
||||||||||||||.||||||||||||||||||||.||||||||.||.||||||||||||||.|||||.||.||
Sbjct 2809 GCAGTGGAAGATGTTCGGCCACCTCACAAAGTAACAGACTACTCATCCTCCAGTGAGGAGTCTGGGACCACAGA 2882
Query 2166 TGAGGAGGACGACGATGTGGAGCAGGAAGGGGCTGACGAGTCCACCTCAGGACCAGAGGACACCAGAGCAGCGT 2239
|||||||||.||.||.|||||.|||||.||||||||.||.||.|||||.||||||||.||||||||||||||||
Sbjct 2883 TGAGGAGGAGGAGGACGTGGAACAGGAGGGGGCTGATGATTCTACCTCGGGACCAGAAGACACCAGAGCAGCGT 2956
Query 2240 CATCTCTGAATTTGAGCAATGGTGAAACGGAATCTGTGAAAACCATGATTGTCCATGATGATGTAGAAAGTGAG 2313
||||||.|||..|||||||.||||||||.||||||||||||||.|||||.||.|||||||||||||||||||||
Sbjct 2957 CATCTCCGAACCTGAGCAACGGTGAAACAGAATCTGTGAAAACAATGATCGTTCATGATGATGTAGAAAGTGAG 3030
Query 2314 CCGGCCATGACCCCATCCAAGGAGGGCACTCTAATCGTCCGCCAGAGTACAGTTGACCAAAAGCGTGCCAGCCA 2387
||.|||||||||||.||||||||||||||.||.||||||||||
Sbjct 3031 CCAGCCATGACCCCGTCCAAGGAGGGCACCCTCATCGTCCGCC------------------------------- 3073
Query 2388 TCATGAGAGCAATGGCTTTGCCGGTCGCATTCACCTCTTGCCAGATCTCTTACAGCAAAGCCATTCCTCCTCCA 2461
Sbjct 3074 -------------------------------------------------------------------------- 3073
Query 2462 CTTCCTCCACCTCCTCCTCCCCATCCTCCAGCCAGCCGACACCCACCATGTCCCCACAGACACCCCAGGACAAG 2535
Sbjct 3074 -------------------------------------------------------------------------- 3073
Query 2536 CTCACTGCTAATGAGACTCAGTCCGCTAGTAGCACACTCCAGAAACACAAATCTTCCTCCTCCTTTACACCTTT 2609
Sbjct 3074 -------------------------------------------------------------------------- 3073
Query 2610 TATAGACCCCAGATTACTACAGATTTCTCCATCTAGCGGAACAACAGTGACATCTGTGGTGGGATTTTCCTGTG 2683
|||||||||.|||||||||||.|||||||||||.||.||.||||||||.||.|||||||||||||||||||
Sbjct 3074 ---AGACCCCAGGTTACTACAGATCTCTCCATCTAGTGGGACGACAGTGACTTCCGTGGTGGGATTTTCCTGTG 3144
Query 2684 ATGGGATGAGACCAGAAGCCATAAGGCAAGATCCTACCCGGAAAGGCTCAGTGGTCAATGTGAATCCTACCAAC 2757
|||||.|||||||||||||||||||||||||||||||.||||||||||||||||||||||||||.||.||.|||
Sbjct 3145 ATGGGCTGAGACCAGAAGCCATAAGGCAAGATCCTACTCGGAAAGGCTCAGTGGTCAATGTGAACCCCACGAAC 3218
Query 2758 ACTAGGCCACAGAGTGACACCCCGGAGATTCGTAAATACAAGAAGAGGTTTAACTCTGAGATTCTGTGTGCTGC 2831
|||||||||||||||||.|||||.|||||||||||||||||||||||.||||||||.|||||.|||||||||||
Sbjct 3219 ACTAGGCCACAGAGTGATACCCCCGAGATTCGTAAATACAAGAAGAGATTTAACTCAGAGATCCTGTGTGCTGC 3292
Query 2832 CTTATGGGGAGTGAATTTGCTAGTGGGTACAGAGAGTGGCCTGATGCTGCTGGACAGAAGTGGCCAAGGGAAGG 2905
|||||||||||||||.|||||.||.|||||||||||.||.||||||||..||||||||||||||||||||||.|
Sbjct 3293 CTTATGGGGAGTGAACTTGCTGGTTGGTACAGAGAGCGGTCTGATGCTCTTGGACAGAAGTGGCCAAGGGAAAG 3366
Query 2906 TCTATCCTCTTATCAACCGAAGACGATTTCAACAAATGGACGTACTTGAGGGCTTGAATGTCTTGGTGACAATA 2979
|.||.|||||.||||.|||||||||.||.||.||||||||.||.||.||.|||.|.||||||.|||||||||||
Sbjct 3367 TATACCCTCTGATCAGCCGAAGACGGTTCCAGCAAATGGATGTGCTCGAAGGCCTAAATGTCCTGGTGACAATA 3440
Query 2980 TCTGGCAAAAAGGATAAGTTACGTGTCTACTATTTGTCCTGGTTAAGAAATAAAATACTTCACAATGATCCAGA 3053
|||||||||||||||||||||||||||||||||||.||||||.||||||||||.||.|||||.|||||||||||
Sbjct 3441 TCTGGCAAAAAGGATAAGTTACGTGTCTACTATTTATCCTGGCTAAGAAATAAGATTCTTCATAATGATCCAGA 3514
Query 3054 AGTTGAGAAGAAGCAGGGATGGACAACCGTAGGGGATTTGGAAGGATGTGTACATTATAAAGTTGTAAAATATG 3127
.|||||||||||||||||.|||||.||.||.||.||.||||||||.||.||.||.||||||||.|
Sbjct 3515 GGTTGAGAAGAAGCAGGGGTGGACCACTGTGGGCGACTTGGAAGGGTGCGTGCACTATAAAGTCG--------- 3579
Query 3128 AAAGAATCAAATTTCTGGTGATTGCTTTGAAGAGTTCTGTGGAAGTCTATGCGTGGGCACCAAAGCCATATCAC 3201
Sbjct 3580 -------------------------------------------------------------------------- 3579
Query 3202 AAATTTATGGCCTTTAAGTCATTTGGAGAATTGGTACATAAGCCATTACTGGTGGATCTCACTGTTGAGGAAGG 3275
Sbjct 3580 -------------------------------------------------------------------------- 3579
Query 3276 CCAGAGGTTGAAAGTGATCTATGGATCCTGTGCTGGATTCCATGCTGTTGATGTGGATTCAGGATCAGTCTATG 3349
Sbjct 3580 -------------------------------------------------------------------------- 3579
Query 3350 ACATTTATCTACCAACACATATCCAGTGTAGCATCAAACCCCATGCAATCATCATCCTCCCCAATACAGATGGA 3423
Sbjct 3580 -------------------------------------------------------------------------- 3579
Query 3424 ATGGAGCTTCTGGTGTGCTATGAAGATGAGGGGGTTTATGTAAACACATATGGAAGGATCACCAAGGATGTAGT 3497
Sbjct 3580 -------------------------------------------------------------------------- 3579
Query 3498 TCTACAGTGGGGAGAGATGCCTACATCAGTAGCATATATTCGATCCAATCAGACAATGGGCTGGGGAGAGAAGG 3571
Sbjct 3580 -------------------------------------------------------------------------- 3579
Query 3572 CCATAGAGATCCGATCTGTGGAAACTGGTCACTTGGATGGTGTGTTCATGCACAAAAGGGCTCAAAGACTAAAA 3645
Sbjct 3580 -------------------------------------------------------------------------- 3579
Query 3646 TTCTTGTGTGAACGCAATGACAAGGTGTTCTTTGCCTCTGTTCGGTCTGGTGGCAGCAGTCAGGTTTATTTCAT 3719
Sbjct 3580 -------------------------------------------------------------------------- 3579
Query 3720 GACCTTAGGCAGGACTTCTCTTCTGAGCTGGTAGAC 3755
Sbjct 3580 ------------------------------------ 3579
