Nucleotide Global Alignment

Description

Query:
TRCN0000489431
Subject:
XR_001781786.1
Aligned Length:
4184
Identities:
830
Gaps:
3220

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATAGCTCCCTTCCCTCGGGCCTCACCCCTTCCCGTCCCCTCCCACCTCCACCTCCGCCCCTCTTTCCAGGCCTA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GCCATTCCAGGTGCACCTTCCCGGGGGAACCCGGAGGAAAGGAAGGAGAAAGGGAGGCAAGGAGGGAGCCGGCT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CTCGGGCATCCTCCCAGATGCGTCTGAGCCGCCTGAAAGTGTGAAGCAGAGGCTGCCCCTGTCCGGTCTGGCTT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AGAGAGCCCGAATTAGCTTTTGTCAGTAGCCCCCTACCCCAGTTCAAGAGTCCCCACATCTCCAGCCCCTCCCG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CACAACGCTGCAGCCGCGGGAGAGCCCGTCCCTTCCACGTGCCAGCAGACCCGCCCCCGCCCGGCCCCCGCACC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CTCAGGGCGCTGGGTTAATCCCGGGCCTCCGTGGCGAAGGGGTGCGAGATCGTGTTTCAAGCGCCCCCTGCCGC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CTCTCCGGACACCAGGAGGCGGCCCCAATGCAGACCCCGGCCGGGCAGGGACGCCCCTGCAGATGGGCCGGGGC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GGAGCAGCAAAGCAGGGCACCGCCCTCGGCCCGCCCGCCGAGGAGGAGACGCTAGCGGGAGGCTGAGCCTGCGG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CGCGCGCCCGGGGACCCGTCGCACTCTGCACTCGGCCGCCTGGGCTGAGGGGACGGGACGGGTGCGGGCGCGGG  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CTCAGCGGGCCGGGAGCTGAGTCAAGGCCGAGAAGCAGAGGGAGGCAAGAGGACAGTGCACCGAGATGGCGGCT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GCAACGGCTGCGGCGGCCGCGGCGGCGGCGGCGGGGGAAGGGATGGAGCCTCGAGCGCTGCAGTACGAGCAGAC  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  CCTGATGTATGGCCGGTACACTCAGGAACTCGGGGCCTTTGCCAAAGAGGAAGCTGCTCGTATTCGCCTGGGAG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  GGCCTGAGCCCTGGAAGGGGTCCCCTTCTGCCCGGGCTACCCCAGAGCTCCTAGAATATGGACAGAGCCGATGT  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GCCAGATGTCGCATTTGTTCTGTACGCTGCCACAAGTTCCTGGTGTCCAGGGTCGGTGAAGACTGGATCTTCCT  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GGTTCTGTTGGGGCTCCTCATGGCACTGGTCAGCTGGGCTATGGACTATGCCATCGCTGTCTGTCTACAGGGTG  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  AGGGCAAAGGCTGGCGAGCTCAGCAATGGATGTCCCGGGGCTTAAACACCAACATCTTACTCCAGTACCTGGCT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  TGGGTTACCTACCCCGTGGTCCTCATCACTTTCTCTGCTGGATTCACCCAGATCCTGGCCCCACAGGCTGTCGG  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  GTCTGGCATCCCCGAAATGAAAACCATCCTTCGGGGAGTGGTGCTGAAAGAATACCTCACCCTCAAGACCTTTG  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  TAGCTAAGGTCATTGGGCTAACCTGTGCCCTGGGCAGTGGGATGCCCCTTGGCAAAGAGGGACCCTTTGTGCAC  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  ATTGCCAGCATGTGTGCCGCCCTTCTCAGCAAGTTCCTCTCCCTCTTTGGGGGTATCTATGAGCATGAGTCCCG  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  GAACACGGAGATGCTAGCTGCTGCATGCGCAGTAGGAGTGGGCTGCTGCTTTGCCGCACCAATCGGAGGGGTCC  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  TATTCAGCATTGAAGTCACCTCCACCTTCTTCGCTGTTAGGAACTACTGGCGGGGCTTCTTTGCGGCCACCTTC  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  AGTGCCTTCATCTTTCGGGTCTTGGCAGTGTGGAACCGTGATGAAGAAACCATCACAGCTCTCTTCAAAACTCG  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  GTTCCGACTCGACTTCCCATTTGACCTGCAAGAGCTGCCAGCCTTTGCTGTCATTGGCATTGCTAGTGGCTTCG  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  GGGGAGCCCTCTTTGTCTACCTGAACCGGAAGATTGTCCAGGTGATGCGGAAGCAAAAAACCATCAACCGCTTC  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  CTCATGAGGAAACGGCTGCTCTTCCCGGCACTGGTGACTCTGCTCATCTCCACTCTGACCTTCCCCCCTGGCTT  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  TGGACAGTTCATGGCCGGACAGCTCTCACAGAAGGAGACCCTAGTCACTCTGTTTGACAACCGGACGTGGGTCC  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  GCCAGGGCCTGGTTGAGGATCTAGAGCTACCCAGCACTTCACAGGCCTGGAGCCCACCACGTGCCAATGTCTTC  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  CTTACTCTGGTCATCTTCATCCTCATGAAGTTCTGGATGTCTGCACTGGCTACCACTATCCCAGTGCCCTGTGG  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  GGCCTTCATGCCTGTCTTTGTCATTGTGTTCCCCTACTACCTCTTTCTCTTCCTAAAACCCTCCCTGAAGGAGC  2220

Query    1  ----------------------------ATGGCTGCCTGGTTCCCAGATGGAATTCATACGGACAGCAGCACCT  46
                                        |||||.|||||||||||||||||.|||||.||.||.||||||||||
Sbjct 2221  GGCATTTGGGCGGCTGGTGGGCGAAAGCATGGCCGCCTGGTTCCCAGATGGGATTCACACAGATAGCAGCACCT  2294

Query   47  ACCGGATTGTGCCTGGGGGCTACGCTGTGGTCGGGGCAGCTGCGCTGGCAGGAGCGGTGACACACACAGTGTCC  120
            ||||.|||||.|||||.|||||.||||||||||||||.|||||.||.||||||||.||||||||||||||||||
Sbjct 2295  ACCGAATTGTACCTGGAGGCTATGCTGTGGTCGGGGCGGCTGCACTCGCAGGAGCAGTGACACACACAGTGTCC  2368

Query  121  ACGGCTGTGATCGTGTTCGAGCTCACAGGCCAGATTGCCCACATCCTGCCTGTCATGATCGTCGTCATCCTGGC  194
            ||.||.|||||.||.|||||||||||.||||||||.||.|||||.||||||||||||||.|..|||||||||||
Sbjct 2369  ACAGCAGTGATTGTCTTCGAGCTCACGGGCCAGATCGCTCACATTCTGCCTGTCATGATTGCTGTCATCCTGGC  2442

Query  195  CAACGCTGTCGCCCAGAGTCTGCAGCCCTCCCTCTATGACAGCATCATCCGAATCAAGAAACTGCCCTACCTGC  268
            .||.|||||.||||||||.||||||||.||.|||||||||||.||||||||.||||||||.|||||||||||.|
Sbjct 2443  TAATGCTGTTGCCCAGAGCCTGCAGCCATCGCTCTATGACAGTATCATCCGCATCAAGAAGCTGCCCTACCTAC  2516

Query  269  CTGAGCTCGGCTGGGGCCGCCACCA-------------------------------------------------  293
            |||||||.|||||||||||||||||                                                 
Sbjct 2517  CTGAGCTGGGCTGGGGCCGCCACCAGTATGAAGGGCCCAGTGCAAAGAGGGTGGGAGTGAGGGGTAGGCCTCCC  2590

Query  294  --------------------------------------------------------------------------  293
                                                                                      
Sbjct 2591  TGGACCCTTCAGCCCCACCTCCAGCAAGGTCTCTTACCAGTGAGGCTGAGACGCTAGCTGTTTTGCTCTGCATT  2664

Query  294  --------------------------------------------------------------------------  293
                                                                                      
Sbjct 2665  AGAGCTGCCCTCACCCTGGGGGGGGGGGGGTCCTGTAGTTGGCCTCTACTGACCCAACCCAGGAGGAAGTTAGA  2738

Query  294  --------------------------------------------------------------------------  293
                                                                                      
Sbjct 2739  GAATGCTAACTGCCCAGGGCCCTCCACTCCTGTCCCCTCTGGTTCTGCACCCTTCCTCATGACACTGGGGTGGT  2812

Query  294  ---------------------------------------------------------------GCAGTACCGGG  304
                                                                           |||||||||||
Sbjct 2813  GGTGGTAATTCTGGGCCAGTCTTCCATGCTGAGCACACCCTGAGTGCACAGTTCTCCCTCCAGGCAGTACCGGG  2886

Query  305  TGCGTGTGGAGGACATCATGGTGCGGGATGTTCCCCATGTGGCCCTCAGCTGCACCTTCCGGGACCTGCGTTTG  378
            ||||.||.||||||||||||||.||||||||.||||||||.||||||||||||||.||.|||||||||||.|||
Sbjct 2887  TGCGAGTCGAGGACATCATGGTTCGGGATGTACCCCATGTAGCCCTCAGCTGCACTTTTCGGGACCTGCGGTTG  2960

Query  379  GCACTGCACAGGACCAAGGGCCGAATGCTGGCCCTAGTGGAGTCCCCTGAGTCCATGATTCTGCTGGGCTCCAT  452
            |||||||||||.|||||||||||.|||.||||||||||||||||.||||||||||||||.||.|||||.|||||
Sbjct 2961  GCACTGCACAGAACCAAGGGCCGTATGTTGGCCCTAGTGGAGTCTCCTGAGTCCATGATCCTACTGGGATCCAT  3034

Query  453  CGAGCGTTCACAGGTGGTGGCATTGTTGGGGGCCCAGCTGAGCCCAGCCCGCCGGCGGCAGCACATGCAGGAGC  526
            |||.||.|||||||||||.|||.|..|.||.|||||||||||||||||.|||.||||||||||||||||..|||
Sbjct 3035  CGAACGCTCACAGGTGGTAGCACTACTAGGAGCCCAGCTGAGCCCAGCGCGCAGGCGGCAGCACATGCAAAAGC  3108

Query  527  GCAGAGCCACCCAGACCTCTCCACTATCTGATCAGGAGGGTCCCCCTACCCCTGAGGCTTCTGTCTGCTTCCAG  600
            ..|||....|||||...|||||||..||.|||||||||.|.|||||||.|.|.|||.|.|||.||.||||||||
Sbjct 3109  TAAGAAAAGCCCAGCTGTCTCCACCGTCGGATCAGGAGAGCCCCCCTAGCTCCGAGACATCTATCCGCTTCCAG  3182

Query  601  GTGAACACAGAAGACTCAGCCTTCCCAGCAGCCCGGGGGGAGACCCACAAGCCCCTAAAGCCTGCACTCAAGAG  674
            |||||||||||.|||||.|.||||.|.|.|||||..|||.||||.|||||||||||.||||||||.||.|||||
Sbjct 3183  GTGAACACAGAGGACTCGGGCTTCTCTGGAGCCCACGGGCAGACTCACAAGCCCCTGAAGCCTGCTCTAAAGAG  3256

Query  675  GGGGCCCAGTGTCACCAG---GAACCTCGGAGAGA--GTCCCACAGGGAGCGCAGAGTCGGCAGGCATCGCCCT  743
            .||||||||   ||.|||   .|.||| |.|| ||  ||.|||||||.|.|...|||||.||||||||.|||||
Sbjct 3257  AGGGCCCAG---CAACAGTACAAGCCT-GCAG-GAAGGTACCACAGGCAACATGGAGTCAGCAGGCATTGCCCT  3325

Query  744  CCGGAGCCTCTTCTGTGGCAGTCCACCCCCTGAGG---------------------------------------  778
            |.|.|||||||||||||||||||||||.|..||||                                       
Sbjct 3326  CAGAAGCCTCTTCTGTGGCAGTCCACCTCTGGAGGCAACATCAGAAGTGAGTAGCCCGGATGCTGCCCTCTCCT  3399

Query  779  ------------------------------------------------------------CTGCTTC-------  785
                                                                        |||||||       
Sbjct 3400  GCCTGCCCAGCTCCCCTTCTGATTCTCCCAGTTAACCCTACGATGACTCTTCCACTCGACCTGCTTCCTGCTCT  3473

Query  786  --------------------------------------------------------------------------  785
                                                                                      
Sbjct 3474  GCTGTCAGCTCTGCCCCTGCAGCATGCCCTTCCTCCTGGGCTCCATCCCATCCTTCACATCCCCTCTCCCTATA  3547

Query  786  ------------------------------------GGAGAAGTTGGAATCCTGTGAGAAGCGCAAGCTGAAGC  823
                                                |||.||||..|||||||||||.||||||||||||||||
Sbjct 3548  ACCTCAACTCCTCTCTGCTTTGGCTCTGACCAAGTTGGAAAAGTCAGAATCCTGTGACAAGCGCAAGCTGAAGC  3621

Query  824  GTGTCCGAATCTCCCTGGC-------------------------------------------------------  842
            |.|||||||||||||||||                                                       
Sbjct 3622  GGGTCCGAATCTCCCTGGCGGTACGTGTGCCCCTCCCCCTGCAGCCCAGGAGCACCAGGCGGGGAGGGCTGGGC  3695

Query  843  ------------------------------------------------------------AAGTGACGCGGACC  856
                                                                        .||||||.|.||||
Sbjct 3696  TTCTAGGTGGGACAGACCTCCCAGAGCCAGGGGTACATCCACCTTCCTGTCTCCCTCCTAGAGTGACTCAGACC  3769

Query  857  TGGAAGGCGAGATGAGCCCTGAAG--------------------------------------------------  880
            .|||||.|||||||||.|||||.|                                                  
Sbjct 3770  CGGAAGCCGAGATGAGTCCTGAGGAGATCTTAGAGTGGGAAGAACAGCAGCTAGATGAGCCAGTCAACTTCAGT  3843

Query  881  -------------------------------------------------------AGACTCACACTATCTTCTC  899
                                                                   ||||.|||||.||||||||
Sbjct 3844  GACTGCAAAATCGACCCTGCCCCCTTCCAGCTGGTGGAGCGGACTTCTTTGCACAAGACCCACACCATCTTCTC  3917

Query  900  ACTGCTGGGAGTGGACCATGCTTATGTCACCAGTATTGGCAGACTCATTGGAATCGTTACTCTAAAGGAGCTCC  973
            |.|||||||||||||||||||||||||||||||.|||||||||||||||||.||.||.||.|||||||||    
Sbjct 3918  ATTGCTGGGAGTGGACCATGCTTATGTCACCAGCATTGGCAGACTCATTGGGATTGTCACCCTAAAGGAG----  3987

Query  974  GGAAGGCCATCGAGGGCTCTGTCACAGCACAGGGTGTGAAAGTCCGGCCGCCCCTCGCCAGCTTCCGAGACAGT  1047
                                                                                      
Sbjct 3988  --------------------------------------------------------------------------  3987

Query 1048  GCCACCAGCAGCAGTGACACGGAGACCACTGAGGTGCATGCACTCTGGGGGCCCCACTCCCGTCATGGCCTCCC  1121
                                                                                      
Sbjct 3988  --------------------------------------------------------------------------  3987

Query 1122  CCGGGAGGGCAGCCCTTCCGACAGCGACGACAAATGCCAA  1161
                                                    
Sbjct 3988  ----------------------------------------  3987

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