Nucleotide Global Alignment

Description

• Query: TRCN0000489480
• Subject: XM_006504396.3
• Aligned Length: 1958
• Identities: 1423
• Gaps: 349

Alignment

Query    1  ATGAGGTTGACGCTACTTTGTTGCACCTGGAGGGAAGAACGTATGGGAGAGGAAGGAAGCGAGTTGCCCGTGTG  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||
Sbjct    1  ATGAGGTTGACGCTACTTTGTTGCACCTGGAGGGAAGAACGTATGGGAGAGGAAGGAAGCGAGTTGCCTGTGTG  74

Query   75  TGCAAGCTGCGGCCAGAGGATCTATGATGGCCAGTACCTCCAGGCCCTGAACGCGGACTGGCACGCAGACTGCT  148
            |||.|||||.|||||||||||||||||.|||||||||||||||||||||||.||.||||||||.||||||||||
Sbjct   75  TGCGAGCTGTGGCCAGAGGATCTATGACGGCCAGTACCTCCAGGCCCTGAATGCTGACTGGCATGCAGACTGCT  148

Query  149  TCAGGTGTTGTGACTGCAGTGCCTCCCTGTCGCACCAGTACTATGAGAAGGATGGGCAGCTCTTCTGCAAGAAG  222
            |||||||.||.||.||.||.|.||||||.||.|||||||||||.|||||||||||.||||||||||||||||||
Sbjct  149  TCAGGTGCTGCGAGTGTAGCGTCTCCCTTTCACACCAGTACTACGAGAAGGATGGACAGCTCTTCTGCAAGAAG  222

Query  223  GACTACTGGGCCCGCTATGGCGAGTCCTGCCATGGGTGCTCTGAGCAAATCACCAAGGGACTGGTTATGGTGGC  296
            ||||||||||||||||||||||||||.|||||.||||||||.|||||.||||||||.||.|||||.||||||||
Sbjct  223  GACTACTGGGCCCGCTATGGCGAGTCTTGCCACGGGTGCTCCGAGCACATCACCAAAGGGCTGGTCATGGTGGC  296

Query  297  TGGGGAGCTGAAGTACCACCCCGAGTGTTTCATCTGCCTCACGTGTGGGACCTTTATCGGTGACGGGGACACCT  370
            |||||||||||||||||||||.||||||||||||||||||.|.|||||.|.|||.||.||.||.||||||||||
Sbjct  297  TGGGGAGCTGAAGTACCACCCTGAGTGTTTCATCTGCCTCGCCTGTGGAAACTTCATTGGCGATGGGGACACCT  370

Query  371  ACACGCTGGTGGAGCACTCCAAGCTGTACTGCGGGCACTGCTACTACCAGACTGTGGTGACCCCCGTCATCGAG  444
            ||||.||||||||||||||||||||||||||.||.||.||||||||||||||.|||||.||.||.||||||||.
Sbjct  371  ACACACTGGTGGAGCACTCCAAGCTGTACTGTGGCCAGTGCTACTACCAGACCGTGGTAACTCCAGTCATCGAA  444

Query  445  CAGATCCTGCCTGACTCCCCTGGCTCCCACCTGCCCCACACCGTCACCCTGGTGTCCATCCCAGCCTCATCTCA  518
            ||||||||.||||||||.||.||||||||||||||||||||.||||||||.|||||.|||||||||||..|.||
Sbjct  445  CAGATCCTACCTGACTCACCCGGCTCCCACCTGCCCCACACAGTCACCCTCGTGTCTATCCCAGCCTCTGCCCA  518

Query  519  TGGCAAGCGTGGACTTTCAGTCTCCATTGACCCCCCGCACGGCCCACCGGGCTGTGGCACCGAGCACTCACACA  592
            ||||||.||.||.||.||.||||||||.||||||||.|||||||||||.||.||||||||.|||||.||.||||
Sbjct  519  TGGCAAACGAGGCCTGTCTGTCTCCATCGACCCCCCTCACGGCCCACCAGGATGTGGCACGGAGCATTCGCACA  592

Query  593  CCGTCCGCGTCCAGGGAGTGGATCCGGGCTGCATGAGCCCAGATGTGAAGAATTCCATCCACGTCGGAGACCGG  666
            |.|||||.|||||.||||||||.||.||||||||||||||||||||||||||||||||||||||.|||||||||
Sbjct  593  CTGTCCGAGTCCAAGGAGTGGACCCAGGCTGCATGAGCCCAGATGTGAAGAATTCCATCCACGTTGGAGACCGG  666

Query  667  ATCTTGGAAATCAATGGCACGCCCATCCGAAATGTGCCCCTGGACGAGATTGACCTGCTGATTCAGGAAACCAG  740
            |||||||||||||||||||||||||||||.||||||||.|||||||||||.|||.|||||||.|||||.|||||
Sbjct  667  ATCTTGGAAATCAATGGCACGCCCATCCGGAATGTGCCGCTGGACGAGATCGACTTGCTGATCCAGGAGACCAG  740

Query  741  CCGCCTGCTCCAGCTGACCCTCGAGCATGACCCTCACGATACACTGGGCCACGGGCTGGGGCCTGAGACCAGCC  814
            |||||||||||||||||||||||||||.|||||.||.||..||||||||||.||||..|.|.|.||..||||||
Sbjct  741  CCGCCTGCTCCAGCTGACCCTCGAGCACGACCCCCATGACTCACTGGGCCATGGGCCCGTGTCGGATCCCAGCC  814

Query  815  CCCTGAGCTCTCCGGCTTATACTCCCAGCGGGGAGGCGGGCAGCTCTGCCCGGCAGAAACCTGTCTTGAGGAGC  888
            ||||||||||.||||...|.|||||||||||..||||.|.||||||||||||||||||||||||||||||||||
Sbjct  815  CCCTGAGCTCCCCGGTGCACACTCCCAGCGGACAGGCAGCCAGCTCTGCCCGGCAGAAACCTGTCTTGAGGAGC  888

Query  889  TGCAGCATCGACAGGTCTCCGGGCGCTGGCTCACTGGGCTCCCCGGCCTCCCAGCGCAAGGACCTGGGTCGCTC  962
            |||||.||.||||.|||.|||||..|..|||||||.|.|||.||.|||||||||||||||||||||||||||||
Sbjct  889  TGCAGTATTGACACGTCCCCGGGTACCAGCTCACTAGCCTCTCCAGCCTCCCAGCGCAAGGACCTGGGTCGCTC  962

Query  963  TGAGTCCCTCCGCGTAGTCTGCCGGCCACACCGCATCTTCCGGCCGTCGGACCTCATCCACGGGGAGGTGCTGG  1036
            .||.||||||||.||.||||||||.||||||||.|||||||||||.||.||.||||||||.|||||.|||||||
Sbjct  963  CGAATCCCTCCGAGTGGTCTGCCGACCACACCGAATCTTCCGGCCATCTGATCTCATCCATGGGGAAGTGCTGG  1036

Query 1037  GCAAGGGCTGCTTCGGCCAGGCTATCAAGGTGACACACCGTGAGACAGGTGAGGTGATGGTGATGAAGGAGCTG  1110
            ||||||||||.||.||||||||.|||||||||||||||||.||.|||||.||||||||||||||||||||.||.
Sbjct 1037  GCAAGGGCTGTTTTGGCCAGGCCATCAAGGTGACACACCGAGAAACAGGCGAGGTGATGGTGATGAAGGAACTT  1110

Query 1111  ATCCGGTTCGACGAGGAGACCCAGAGGACGTTCCTCAAGGAGGTGAAGGTCATGCGATGCCTGGAACACCCCAA  1184
            ||||||||.||.|||||||||||||||||.||||||||||||||.|||||||||||.||||||||.|||||.||
Sbjct 1111  ATCCGGTTTGATGAGGAGACCCAGAGGACATTCCTCAAGGAGGTAAAGGTCATGCGCTGCCTGGAGCACCCTAA  1184

Query 1185  CGTGCTCAAGTTCATCGGGGTGCTCTACAAGGACAAGAGGCTCAACTTCATCACTGAGTACATCAAGGGCGGCA  1258
            ||||||||||||||||||.||||||||||||||||||.||||.|||||||||||.|||||||||||||||||||
Sbjct 1185  CGTGCTCAAGTTCATCGGAGTGCTCTACAAGGACAAGCGGCTAAACTTCATCACAGAGTACATCAAGGGCGGCA  1258

Query 1259  CGCTCCGGGGCATCATCAAGAGCATGGACAGCCAGTACCCATGGAGCCAGAGAGTGAGCTTTGCCAAGGACATC  1332
            |.||.||||||||||||||||.||||||||||||||||||.|||||.|||||.||.|||||||||||||||||.
Sbjct 1259  CCCTGCGGGGCATCATCAAGAACATGGACAGCCAGTACCCGTGGAGTCAGAGGGTCAGCTTTGCCAAGGACATT  1332

Query 1333  GCATCAGGGATGGCCTACCTTCACTCCATGAACATCATCCACCGAGACCTCAACTCCCACAACTGCCTGGTCCG  1406
            ||||||||||||||||||||.||.||.||||||||||||||||||||||||||||||||||||||.||||||||
Sbjct 1333  GCATCAGGGATGGCCTACCTCCATTCGATGAACATCATCCACCGAGACCTCAACTCCCACAACTGTCTGGTCCG  1406

Query 1407  CGAGAACAAGAATGTGGTGGTGGCTGACTTCGGGCTGGCGCGTCTCATGGTGGACGAGAAGACTCAGCCTGAGG  1480
            .||                      |.||||                      ||    ||||.|..|||||||
Sbjct 1407  TGA----------------------GCCTTC----------------------AC----AGACACCACCTGAGG  1432

Query 1481  --GCCTGCGGAGCCTCAAGAAGCCAG---ACCGCAAGAAGCGCTACACCGTG-GTGGGCAACCCCTACTGGATG  1548
              |||    .||.||     |.||||   .|.||||.||..||.|||  ||| |||||||         ||  |
Sbjct 1433  TAGCC----CAGGCT-----ACCCAGGCAGCAGCAACAACTGCAACA--GTGTGTGGGCA---------GG--G  1484

Query 1549  GCACCTGAGATGATCAACGGCCGCAGCTATGATGAGAAGGTGGATGTGTTCTCCTTTGGGATCGTCCTGTGCGA  1622
            |||.|||           |||             |||             ||.|||  |.||.|        ||
Sbjct 1485  GCATCTG-----------GGC-------------AGA-------------CTTCTT--GAATTG--------GA  1511

Query 1623  GA-TCATCGGGCGGGTGAACGCAGACCCTGACTACCTGCCCCGCA---CCATGGACTTTGGCCTCAACGTGCGA  1692
            || |           ||   |||||                .|||   ||.||||    |||  |||     ||
Sbjct 1512  GACT-----------TG---GCAGA----------------GGCATGTCCGTGGA----GGC--CAA-----GA  1544

Query 1693  GGATTCCTGGACCGCTACTGCCCCCCAAACTGCCCCCCGAGCTTCTTCCCCATCACCGTGCGCTGTT-GCGATC  1765
            ||||....||               |||.|.|  ||||.||.||          ||.|      ||| |.|.||
Sbjct 1545  GGATAAGAGG---------------CAATCAG--CCCCAAGTTT----------ACAG------GTTGGTGTTC  1585

Query 1766  TGGACCCCGAGAAGAGGCCATCCTTTGTGAAGCTGGAACACTGG------CTGGAGACCCTCCGCATGCACCTG  1833
            |  ||    |||                 |||..|||  |||||      ||||.||      |||.|      
Sbjct 1586  T--AC----AGA-----------------AAGTAGGA--ACTGGCCCAAACTGGGGA------GCAAG------  1622

Query 1834  GCCGGCCACCTGCCACTGGGCCCACAGCTGGAGCAGCTGGACAGAGGTTTCTGGGAGACCTACCGGCGCGGCGA  1907
                      ||||                                                            
Sbjct 1623  ----------TGCC------------------------------------------------------------  1626

Query 1908  GAGCGGACTGCCTGCCCACCCTGAGGTCCCCGAC  1941
                                              
Sbjct 1627  ----------------------------------  1626