Nucleotide Global Alignment

Description

Query:
TRCN0000489543
Subject:
XM_005253602.2
Aligned Length:
1423
Identities:
1135
Gaps:
287

Alignment

Query    1  ATGATTTTATTTTGACTGATAGTGACCTGTTCGTTGCAACAAATTGATGAGCAATGCTTTTTTATAATGCCAAC  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  TTTGTACAAAAAAGCAGGCACCATGGCGGCTAGTGATACAGAGCGAGATGGACTAGCCCCAGAAAAGACATCAC  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  CAGATAGAGATAAGAAAAAAGAGCAGTCAGAAGTATCTGTTTCTCCTAGAGCTTCAAAACATCATTATTCAAGA  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  TCACGATCAAGGTCAAGAGAAAGAAAACGAAAGTCAGATAATGAAGGAAGAAAACACAGGAGCCGGAGCAGAAG  296
                                                    ||||||||||||||||||||||||||||||||||
Sbjct    1  ----------------------------------------ATGAAGGAAGAAAACACAGGAGCCGGAGCAGAAG  34

Query  297  CAAAG----------------------AGGGAAGAAGACATGAATCCAAAGATAAATCCTCTAAGAAACATAAG  348
            |||||                      |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   35  CAAAGAGAACCAACTTCTTCTTAAAACAGGGAAGAAGACATGAATCCAAAGATAAATCCTCTAAGAAACATAAG  108

Query  349  TCTGAGGAACATAATGACAAAGAACATTCTTCTGATAAAGGAAGAGAGCGACTAAATTCATCTGAAAATGGTGA  422
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  109  TCTGAGGAACATAATGACAAAGAACATTCTTCTGATAAAGGAAGAGAGCGACTAAATTCATCTGAAAATGGTGA  182

Query  423  GGACAGGCACAAACGCAAAGAAAGAAAGTCATCAAGAGGCAGAAGTCACTCAAGATCTAGGTCTCGTGAAAGAC  496
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  183  GGACAGGCACAAACGCAAAGAAAGAAAGTCATCAAGAGGCAGAAGTCACTCAAGATCTAGGTCTCGTGAAAGAC  256

Query  497  GCCATCGTAGTAGAAGCAGGGAGCGGAAGAAGTCTCGATCCAGGAGTAGGGAGCGGAAGAAATCGAGATCCAGA  570
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  257  GCCATCGTAGTAGAAGCAGGGAGCGGAAGAAGTCTCGATCCAGGAGTAGGGAGCGGAAGAAATCGAGATCCAGA  330

Query  571  AGCAGAGAGAGGAAGAAATCGAGATCCAGAAGCAGGGAAAGAAAACGGCGGATCAGGTCTCGTTCCCGCTCAAG  644
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  331  AGCAGAGAGAGGAAGAAATCGAGATCCAGAAGCAGGGAAAGAAAACGGCGGATCAGGTCTCGTTCCCGCTCAAG  404

Query  645  ATCAAGACACAGGCATAGGACTAGAAGCAGGAGTAGGACAAGGAGTAGGAGTCGAGATAGAAAGAAGAGAATTG  718
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  405  ATCAAGACACAGGCATAGGACTAGAAGCAGGAGTAGGACAAGGAGTAGGAGTCGAGATAGAAAGAAGAGAATTG  478

Query  719  AAAAGCCGAGAAGATTTAGCAGAAGTTTAAGCCGGACTCCAAGTCCACGTCCCTTCAGAGGCAGAAACACAGCA  792
            ||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||
Sbjct  479  AAAAGCCGAGAAGATTTAGCAGAAGTTTAAGCCGGACTCCAAGTCCACCTCCCTTCAGAGGCAGAAACACAGCA  552

Query  793  ATGGATGCACAGGAAGCTTTAGCTAGAAGGTTGGAAAGGGCAAAGAAATTACAAGAACAGCGAGAAAAGGAAAT  866
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  553  ATGGATGCACAGGAAGCTTTAGCTAGAAGGTTGGAAAGGGCAAAGAAATTACAAGAACAGCGAGAAAAGGAAAT  626

Query  867  GGTTGAAAAACAAAAACAACAAGAAATAGCT---GCAGCTGCAGCTACTGGAGGTTCTGTTCTCAATGTTGCTG  937
            |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||
Sbjct  627  GGTTGAAAAACAAAAACAACAAGAAATAGCTGCAGCAGCTGCAGCTACTGGAGGTTCTGTTCTCAATGTTGCTG  700

Query  938  CCCTGTTGGCATCAGGAACACAAGTAACACCTCAGATAGCCATGGCAGCTCAGATGGCAGCCCTGCAAGCTAAA  1011
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  701  CCCTGTTGGCATCAGGAACACAAGTAACACCTCAGATAGCCATGGCAGCTCAGATGGCAGCCCTGCAAGCTAAA  774

Query 1012  GCTTTGGCAGAGACAGGAATAGCTGTTCCTAGCTACTATAACCCAGCCGCTGTTAATCCAATGAAATTTGCTGA  1085
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  775  GCTTTGGCAGAGACAGGAATAGCTGTTCCTAGCTACTATAACCCAGCCGCTGTTAATCCAATGAAATTTGCTGA  848

Query 1086  ACAAGAGAAAAAAAGGAAAATGCTTTGGCAGGGCAAGAAAGAAGGGGACAAATCCCAATCTGCTGAAATATGGG  1159
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  849  ACAAGAGAAAAAAAGGAAAATGCTTTGGCAGGGCAAGAAAGAAGGGGACAAATCCCAATCTGCTGAAATATGGG  922

Query 1160  AAAAATTGAATTTTGGAAACAAGGACCAAAATGTCAAATTTAGGAAATTGATGGGTATTAAGAGTGAAGATGAA  1233
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  923  AAAAATTGAATTTTGGAAACAAGGACCAAAATGTCAAATTTAGGAAATTGATGGGTATTAAGAGTGAAGATGAA  996

Query 1234  GCTGGATGTAGCTCAGTTGATGAAGAAAGTTACAAGACTCTGAAGCAGCAGGAAGAAGTATTTCGAAATTTAGA  1307
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  997  GCTGGATGTAGCTCAGTTGATGAAGAAAGTTACAAGACTCTGAAGCAGCAGGAAGAAGTATTTCGAAATTTAGA  1070

Query 1308  TGCTCAGTATGAAATGGCAAGATCACAAACCCACACACAAAGAGGAATGGGTTTGGGTTTCACATCTTCAATGC  1381
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071  TGCTCAGTATGAAATGGCAAGATCACAAACCCACACACAAAGAGGAATGGGTTTGGGTTTCACATCTTCAATGC  1144

Query 1382  GAGGAATGGATGCAGTT  1398
            |||||||||||||||||
Sbjct 1145  GAGGAATGGATGCAGTT  1161

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