Nucleotide Global Alignment

Description

• Query: TRCN0000489543
• Subject: XM_006530242.3
• Aligned Length: 1423
• Identities: 1023
• Gaps: 287

Alignment

Query    1  ATGATTTTATTTTGACTGATAGTGACCTGTTCGTTGCAACAAATTGATGAGCAATGCTTTTTTATAATGCCAAC  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  TTTGTACAAAAAAGCAGGCACCATGGCGGCTAGTGATACAGAGCGAGATGGACTAGCCCCAGAAAAGACATCAC  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  CAGATAGAGATAAGAAAAAAGAGCAGTCAGAAGTATCTGTTTCTCCTAGAGCTTCAAAACATCATTATTCAAGA  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  TCACGATCAAGGTCAAGAGAAAGAAAACGAAAGTCAGATAATGAAGGAAGAAAACACAGGAGCCGGAGCAGAAG  296
                                                    ||||.|||||.||.||||||||||||||||||||
Sbjct    1  ----------------------------------------ATGATGGAAGGAAGCACAGGAGCCGGAGCAGAAG  34

Query  297  CAAAG----------------------AGGGAAGAAGACATGAATCCAAAGATAAATCCTCTAAGAAACATAAG  348
            |||||                      ||||||||||||||||.|||||||||||.||||||||||.|||.|||
Sbjct   35  CAAAGAGAACCAACTTCTTGTTAAAACAGGGAAGAAGACATGAGTCCAAAGATAAGTCCTCTAAGAGACACAAG  108

Query  349  TCTGAGGAACATAATGACAAAGAACATTCTTCTGATAAAGGAAGAGAGCGACTAAATTCATCTGAAAATGGTGA  422
            ||||||||.||.|||||||||||||||||||||||.|||||||||||||||.|||||||||||||.||||||||
Sbjct  109  TCTGAGGAGCACAATGACAAAGAACATTCTTCTGACAAAGGAAGAGAGCGATTAAATTCATCTGAGAATGGTGA  182

Query  423  GGACAGGCACAAACGCAAAGAAAGAAAGTCATCAAGAGGCAGAAGTCACTCAAGATCTAGGTCTCGTGAAAGAC  496
            ||||||.||.||||||||||||||.|||||||||.|.|||||||||||||||||.|||||.||.||||||||.|
Sbjct  183  GGACAGACATAAACGCAAAGAAAGGAAGTCATCACGGGGCAGAAGTCACTCAAGGTCTAGATCGCGTGAAAGGC  256

Query  497  GCCATCGTAGTAGAAGCAGGGAGCGGAAGAAGTCTCGATCCAGGAGTAGGGAGCGGAAGAAATCGAGATCCAGA  570
            |||||||.||||||||||||||..||||||||||||||||.|||||||||||.|||||.||.||..||||||||
Sbjct  257  GCCATCGCAGTAGAAGCAGGGAAAGGAAGAAGTCTCGATCGAGGAGTAGGGATCGGAAAAAGTCTCGATCCAGA  330

Query  571  AGCAGAGAGAGGAAGAAATCGAGATCCAGAAGCAGGGAAAGAAAACGGCGGATCAGGTCTCGTTCCCGCTCAAG  644
            ||||||||.||||||||.||.|||||.|||||||||||.||.|||||..|||||||..||||||||||.||.||
Sbjct  331  AGCAGAGACAGGAAGAAGTCAAGATCTAGAAGCAGGGATAGGAAACGAAGGATCAGAACTCGTTCCCGATCCAG  404

Query  645  ATCAAGACACAGGCATAGGACTAGAAGCAGGAGTAGGACAAGGAGTAGGAGTCGAGATAGAAAGAAGAGAATTG  718
            |||.|||||||||||||||||||||||||||||.||..||||||||.|.|||||||||||||||||||||||||
Sbjct  405  ATCCAGACACAGGCATAGGACTAGAAGCAGGAGCAGATCAAGGAGTCGAAGTCGAGATAGAAAGAAGAGAATTG  478

Query  719  AAAAGCCGAGAAGATTTAGCAGAAGTTTAAGCCGGACTCCAAGTCCACGTCCCTTCAGAGGCAGAAACACAGCA  792
            ||||.||.|||||||||||||||||..||||||||||.||.|||||||.|||||||||||||||||||||||||
Sbjct  479  AAAAACCAAGAAGATTTAGCAGAAGCCTAAGCCGGACACCTAGTCCACCTCCCTTCAGAGGCAGAAACACAGCA  552

Query  793  ATGGATGCACAGGAAGCTTTAGCTAGAAGGTTGGAAAGGGCAAAGAAATTACAAGAACAGCGAGAAAAGGAAAT  866
            |||||.||.||.|||||..|||||||.||.||.||||||||||||||||||||||||||.||||||||||||||
Sbjct  553  ATGGACGCTCAAGAAGCACTAGCTAGGAGATTAGAAAGGGCAAAGAAATTACAAGAACAACGAGAAAAGGAAAT  626

Query  867  GGTTGAAAAACAAAAACAACAAGAAATAGCT---GCAGCTGCAGCTACTGGAGGTTCTGTTCTCAATGTTGCTG  937
            |||||||||.||.||||||||||||||.|||   |||||||||||.|||||||||||.|||||.||||||||||
Sbjct  627  GGTTGAAAAGCAGAAACAACAAGAAATGGCTGCAGCAGCTGCAGCCACTGGAGGTTCAGTTCTTAATGTTGCTG  700

Query  938  CCCTGTTGGCATCAGGAACACAAGTAACACCTCAGATAGCCATGGCAGCTCAGATGGCAGCCCTGCAAGCTAAA  1011
            |.|||||||||||||||||.||.||.||.|||||||||||.|||||||||||.|||||||||||||||||||||
Sbjct  701  CACTGTTGGCATCAGGAACGCAGGTTACTCCTCAGATAGCTATGGCAGCTCAAATGGCAGCCCTGCAAGCTAAA  774

Query 1012  GCTTTGGCAGAGACAGGAATAGCTGTTCCTAGCTACTATAACCCAGCCGCTGTTAATCCAATGAAATTTGCTGA  1085
            ||.|||||||||||.||.|||||.||.||.||||||||.||||||||.|||||.|||||||||||.||||||||
Sbjct  775  GCCTTGGCAGAGACTGGCATAGCAGTGCCCAGCTACTACAACCCAGCAGCTGTGAATCCAATGAAGTTTGCTGA  848

Query 1086  ACAAGAGAAAAAAAGGAAAATGCTTTGGCAGGGCAAGAAAGAAGGGGACAAATCCCAATCTGCTGAAATATGGG  1159
            .|||||||||||.|||||||||||.|||||.||||||||||||||.||||||||.||.|||||||||||.||||
Sbjct  849  GCAAGAGAAAAAGAGGAAAATGCTCTGGCAAGGCAAGAAAGAAGGCGACAAATCTCAGTCTGCTGAAATCTGGG  922

Query 1160  AAAAATTGAATTTTGGAAACAAGGACCAAAATGTCAAATTTAGGAAATTGATGGGTATTAAGAGTGAAGATGAA  1233
            |||||||.|||||||||||||||||||||||||||||||||||.||.||.|||||.||||||||||||||||||
Sbjct  923  AAAAATTAAATTTTGGAAACAAGGACCAAAATGTCAAATTTAGAAAGTTAATGGGCATTAAGAGTGAAGATGAA  996

Query 1234  GCTGGATGTAGCTCAGTTGATGAAGAAAGTTACAAGACTCTGAAGCAGCAGGAAGAAGTATTTCGAAATTTAGA  1307
            |||||.||||||||.|||||||||||||||||.||||||.|.|||||.||.||||||||.|||||.|||.|.||
Sbjct  997  GCTGGCTGTAGCTCCGTTGATGAAGAAAGTTATAAGACTTTAAAGCAACAAGAAGAAGTTTTTCGCAATCTTGA  1070

Query 1308  TGCTCAGTATGAAATGGCAAGATCACAAACCCACACACAAAGAGGAATGGGTTTGGGTTTCACATCTTCAATGC  1381
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071  TGCTCAGTATGAAATGGCAAGATCACAAACCCACACACAAAGAGGAATGGGTTTGGGTTTCACATCTTCAATGC  1144

Query 1382  GAGGAATGGATGCAGTT  1398
            |.|||||||||.|||||
Sbjct 1145  GTGGAATGGATACAGTT  1161