Nucleotide Global Alignment

Description

• Query: TRCN0000489543
• Subject: XM_006530244.3
• Aligned Length: 1420
• Identities: 1023
• Gaps: 284

Alignment

Query    1  ATGATTTTATTTTGACTGATAGTGACCTGTTCGTTGCAACAAATTGATGAGCAATGCTTTTTTATAATGCCAAC  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  TTTGTACAAAAAAGCAGGCACCATGGCGGCTAGTGATACAGAGCGAGATGGACTAGCCCCAGAAAAGACATCAC  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  CAGATAGAGATAAGAAAAAAGAGCAGTCAGAAGTATCTGTTTCTCCTAGAGCTTCAAAACATCATTATTCAAGA  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  TCACGATCAAGGTCAAGAGAAAGAAAACGAAAGTCAGATAATGAAGGAAGAAAACACAGGAGCCGGAGCAGAAG  296
                                                    ||||.|||||.||.||||||||||||||||||||
Sbjct    1  ----------------------------------------ATGATGGAAGGAAGCACAGGAGCCGGAGCAGAAG  34

Query  297  CAAAG----------------------AGGGAAGAAGACATGAATCCAAAGATAAATCCTCTAAGAAACATAAG  348
            |||||                      ||||||||||||||||.|||||||||||.||||||||||.|||.|||
Sbjct   35  CAAAGAGAACCAACTTCTTGTTAAAACAGGGAAGAAGACATGAGTCCAAAGATAAGTCCTCTAAGAGACACAAG  108

Query  349  TCTGAGGAACATAATGACAAAGAACATTCTTCTGATAAAGGAAGAGAGCGACTAAATTCATCTGAAAATGGTGA  422
            ||||||||.||.|||||||||||||||||||||||.|||||||||||||||.|||||||||||||.||||||||
Sbjct  109  TCTGAGGAGCACAATGACAAAGAACATTCTTCTGACAAAGGAAGAGAGCGATTAAATTCATCTGAGAATGGTGA  182

Query  423  GGACAGGCACAAACGCAAAGAAAGAAAGTCATCAAGAGGCAGAAGTCACTCAAGATCTAGGTCTCGTGAAAGAC  496
            ||||||.||.||||||||||||||.|||||||||.|.|||||||||||||||||.|||||.||.||||||||.|
Sbjct  183  GGACAGACATAAACGCAAAGAAAGGAAGTCATCACGGGGCAGAAGTCACTCAAGGTCTAGATCGCGTGAAAGGC  256

Query  497  GCCATCGTAGTAGAAGCAGGGAGCGGAAGAAGTCTCGATCCAGGAGTAGGGAGCGGAAGAAATCGAGATCCAGA  570
            |||||||.||||||||||||||..||||||||||||||||.|||||||||||.|||||.||.||..||||||||
Sbjct  257  GCCATCGCAGTAGAAGCAGGGAAAGGAAGAAGTCTCGATCGAGGAGTAGGGATCGGAAAAAGTCTCGATCCAGA  330

Query  571  AGCAGAGAGAGGAAGAAATCGAGATCCAGAAGCAGGGAAAGAAAACGGCGGATCAGGTCTCGTTCCCGCTCAAG  644
            ||||||||.||||||||.||.|||||.|||||||||||.||.|||||..|||||||..||||||||||.||.||
Sbjct  331  AGCAGAGACAGGAAGAAGTCAAGATCTAGAAGCAGGGATAGGAAACGAAGGATCAGAACTCGTTCCCGATCCAG  404

Query  645  ATCAAGACACAGGCATAGGACTAGAAGCAGGAGTAGGACAAGGAGTAGGAGTCGAGATAGAAAGAAGAGAATTG  718
            |||.|||||||||||||||||||||||||||||.||..||||||||.|.|||||||||||||||||||||||||
Sbjct  405  ATCCAGACACAGGCATAGGACTAGAAGCAGGAGCAGATCAAGGAGTCGAAGTCGAGATAGAAAGAAGAGAATTG  478

Query  719  AAAAGCCGAGAAGATTTAGCAGAAGTTTAAGCCGGACTCCAAGTCCACGTCCCTTCAGAGGCAGAAACACAGCA  792
            ||||.||.|||||||||||||||||..||||||||||.||.|||||||.|||||||||||||||||||||||||
Sbjct  479  AAAAACCAAGAAGATTTAGCAGAAGCCTAAGCCGGACACCTAGTCCACCTCCCTTCAGAGGCAGAAACACAGCA  552

Query  793  ATGGATGCACAGGAAGCTTTAGCTAGAAGGTTGGAAAGGGCAAAGAAATTACAAGAACAGCGAGAAAAGGAAAT  866
            |||||.||.||.|||||..|||||||.||.||.||||||||||||||||||||||||||.||||||||||||||
Sbjct  553  ATGGACGCTCAAGAAGCACTAGCTAGGAGATTAGAAAGGGCAAAGAAATTACAAGAACAACGAGAAAAGGAAAT  626

Query  867  GGTTGAAAAACAAAAACAACAAGAAATAGCTGCAGCTGCAGCTACTGGAGGTTCTGTTCTCAATGTTGCTGCCC  940
            |||||||||.||.||||||||||||||.||||||||||||||.|||||||||||.|||||.|||||||||||.|
Sbjct  627  GGTTGAAAAGCAGAAACAACAAGAAATGGCTGCAGCTGCAGCCACTGGAGGTTCAGTTCTTAATGTTGCTGCAC  700

Query  941  TGTTGGCATCAGGAACACAAGTAACACCTCAGATAGCCATGGCAGCTCAGATGGCAGCCCTGCAAGCTAAAGCT  1014
            ||||||||||||||||.||.||.||.|||||||||||.|||||||||||.|||||||||||||||||||||||.
Sbjct  701  TGTTGGCATCAGGAACGCAGGTTACTCCTCAGATAGCTATGGCAGCTCAAATGGCAGCCCTGCAAGCTAAAGCC  774

Query 1015  TTGGCAGAGACAGGAATAGCTGTTCCTAGCTACTATAACCCAGCCGCTGTTAATCCAATGAAATTTGCTGAACA  1088
            |||||||||||.||.|||||.||.||.||||||||.||||||||.|||||.|||||||||||.||||||||.||
Sbjct  775  TTGGCAGAGACTGGCATAGCAGTGCCCAGCTACTACAACCCAGCAGCTGTGAATCCAATGAAGTTTGCTGAGCA  848

Query 1089  AGAGAAAAAAAGGAAAATGCTTTGGCAGGGCAAGAAAGAAGGGGACAAATCCCAATCTGCTGAAATATGGGAAA  1162
            |||||||||.|||||||||||.|||||.||||||||||||||.||||||||.||.|||||||||||.|||||||
Sbjct  849  AGAGAAAAAGAGGAAAATGCTCTGGCAAGGCAAGAAAGAAGGCGACAAATCTCAGTCTGCTGAAATCTGGGAAA  922

Query 1163  AATTGAATTTTGGAAACAAGGACCAAAATGTCAAATTTAGGAAATTGATGGGTATTAAGAGTGAAGATGAAGCT  1236
            ||||.|||||||||||||||||||||||||||||||||||.||.||.|||||.|||||||||||||||||||||
Sbjct  923  AATTAAATTTTGGAAACAAGGACCAAAATGTCAAATTTAGAAAGTTAATGGGCATTAAGAGTGAAGATGAAGCT  996

Query 1237  GGATGTAGCTCAGTTGATGAAGAAAGTTACAAGACTCTGAAGCAGCAGGAAGAAGTATTTCGAAATTTAGATGC  1310
            ||.||||||||.|||||||||||||||||.||||||.|.|||||.||.||||||||.|||||.|||.|.|||||
Sbjct  997  GGCTGTAGCTCCGTTGATGAAGAAAGTTATAAGACTTTAAAGCAACAAGAAGAAGTTTTTCGCAATCTTGATGC  1070

Query 1311  TCAGTATGAAATGGCAAGATCACAAACCCACACACAAAGAGGAATGGGTTTGGGTTTCACATCTTCAATGCGAG  1384
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|
Sbjct 1071  TCAGTATGAAATGGCAAGATCACAAACCCACACACAAAGAGGAATGGGTTTGGGTTTCACATCTTCAATGCGTG  1144

Query 1385  GAATGGATGCAGTT  1398
            ||||||||.|||||
Sbjct 1145  GAATGGATACAGTT  1158