Nucleotide Global Alignment

Description

• Query: TRCN0000489543
• Subject: XM_006530247.3
• Aligned Length: 1411
• Identities: 1003
• Gaps: 296

Alignment

Query    1  ATGATTTTATTTTGACTGATAGTGACCTGTTCGTTGCAACAAATTGATGAGCAATGCTTTTTTATAATGCCAAC  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  TTTGTACAAAAAAGCAGGCACCATGGCGGCTAGTGATACAGAGCGAGATGGACTAGCCCCAGAAAAGACATCAC  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  CAGATAGAGATAAGAAAAAAGAGCAGTCAGAAGTATCTGTTTCTCCTAGAGCTTCAAAACATCATTATTCAAGA  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  TCACGATCAAGGTCAAGAGAAAGAAAACGAAAGTCAGATAATGAAGGAAGAA--AAC--------ACAGGAGCC  286
                                                    ||||  .|||||  |||        |        
Sbjct    1  ----------------------------------------ATGA--TAAGAACCAACTTCTTGTTA--------  24

Query  287  GGAGCAGAAGCAAAGAGGGAAGAAGACATGAATCCAAAGATAAATCCTCTAAGAAACATAAGTCTGAGGAACAT  360
                       |||.||||||||||||||||.|||||||||||.||||||||||.|||.|||||||||||.||.
Sbjct   25  -----------AAACAGGGAAGAAGACATGAGTCCAAAGATAAGTCCTCTAAGAGACACAAGTCTGAGGAGCAC  87

Query  361  AATGACAAAGAACATTCTTCTGATAAAGGAAGAGAGCGACTAAATTCATCTGAAAATGGTGAGGACAGGCACAA  434
            |||||||||||||||||||||||.|||||||||||||||.|||||||||||||.||||||||||||||.||.||
Sbjct   88  AATGACAAAGAACATTCTTCTGACAAAGGAAGAGAGCGATTAAATTCATCTGAGAATGGTGAGGACAGACATAA  161

Query  435  ACGCAAAGAAAGAAAGTCATCAAGAGGCAGAAGTCACTCAAGATCTAGGTCTCGTGAAAGACGCCATCGTAGTA  508
            ||||||||||||.|||||||||.|.|||||||||||||||||.|||||.||.||||||||.||||||||.||||
Sbjct  162  ACGCAAAGAAAGGAAGTCATCACGGGGCAGAAGTCACTCAAGGTCTAGATCGCGTGAAAGGCGCCATCGCAGTA  235

Query  509  GAAGCAGGGAGCGGAAGAAGTCTCGATCCAGGAGTAGGGAGCGGAAGAAATCGAGATCCAGAAGCAGAGAGAGG  582
            ||||||||||..||||||||||||||||.|||||||||||.|||||.||.||..||||||||||||||||.|||
Sbjct  236  GAAGCAGGGAAAGGAAGAAGTCTCGATCGAGGAGTAGGGATCGGAAAAAGTCTCGATCCAGAAGCAGAGACAGG  309

Query  583  AAGAAATCGAGATCCAGAAGCAGGGAAAGAAAACGGCGGATCAGGTCTCGTTCCCGCTCAAGATCAAGACACAG  656
            |||||.||.|||||.|||||||||||.||.|||||..|||||||..||||||||||.||.|||||.||||||||
Sbjct  310  AAGAAGTCAAGATCTAGAAGCAGGGATAGGAAACGAAGGATCAGAACTCGTTCCCGATCCAGATCCAGACACAG  383

Query  657  GCATAGGACTAGAAGCAGGAGTAGGACAAGGAGTAGGAGTCGAGATAGAAAGAAGAGAATTGAAAAGCCGAGAA  730
            |||||||||||||||||||||.||..||||||||.|.|||||||||||||||||||||||||||||.||.||||
Sbjct  384  GCATAGGACTAGAAGCAGGAGCAGATCAAGGAGTCGAAGTCGAGATAGAAAGAAGAGAATTGAAAAACCAAGAA  457

Query  731  GATTTAGCAGAAGTTTAAGCCGGACTCCAAGTCCACGTCCCTTCAGAGGCAGAAACACAGCAATGGATGCACAG  804
            |||||||||||||..||||||||||.||.|||||||.||||||||||||||||||||||||||||||.||.||.
Sbjct  458  GATTTAGCAGAAGCCTAAGCCGGACACCTAGTCCACCTCCCTTCAGAGGCAGAAACACAGCAATGGACGCTCAA  531

Query  805  GAAGCTTTAGCTAGAAGGTTGGAAAGGGCAAAGAAATTACAAGAACAGCGAGAAAAGGAAATGGTTGAAAAACA  878
            |||||..|||||||.||.||.||||||||||||||||||||||||||.|||||||||||||||||||||||.||
Sbjct  532  GAAGCACTAGCTAGGAGATTAGAAAGGGCAAAGAAATTACAAGAACAACGAGAAAAGGAAATGGTTGAAAAGCA  605

Query  879  AAAACAACAAGAAATAGCT---GCAGCTGCAGCTACTGGAGGTTCTGTTCTCAATGTTGCTGCCCTGTTGGCAT  949
            .||||||||||||||.|||   |||||||||||.|||||||||||.|||||.|||||||||||.||||||||||
Sbjct  606  GAAACAACAAGAAATGGCTGCAGCAGCTGCAGCCACTGGAGGTTCAGTTCTTAATGTTGCTGCACTGTTGGCAT  679

Query  950  CAGGAACACAAGTAACACCTCAGATAGCCATGGCAGCTCAGATGGCAGCCCTGCAAGCTAAAGCTTTGGCAGAG  1023
            |||||||.||.||.||.|||||||||||.|||||||||||.|||||||||||||||||||||||.|||||||||
Sbjct  680  CAGGAACGCAGGTTACTCCTCAGATAGCTATGGCAGCTCAAATGGCAGCCCTGCAAGCTAAAGCCTTGGCAGAG  753

Query 1024  ACAGGAATAGCTGTTCCTAGCTACTATAACCCAGCCGCTGTTAATCCAATGAAATTTGCTGAACAAGAGAAAAA  1097
            ||.||.|||||.||.||.||||||||.||||||||.|||||.|||||||||||.||||||||.|||||||||||
Sbjct  754  ACTGGCATAGCAGTGCCCAGCTACTACAACCCAGCAGCTGTGAATCCAATGAAGTTTGCTGAGCAAGAGAAAAA  827

Query 1098  AAGGAAAATGCTTTGGCAGGGCAAGAAAGAAGGGGACAAATCCCAATCTGCTGAAATATGGGAAAAATTGAATT  1171
            .|||||||||||.|||||.||||||||||||||.||||||||.||.|||||||||||.|||||||||||.||||
Sbjct  828  GAGGAAAATGCTCTGGCAAGGCAAGAAAGAAGGCGACAAATCTCAGTCTGCTGAAATCTGGGAAAAATTAAATT  901

Query 1172  TTGGAAACAAGGACCAAAATGTCAAATTTAGGAAATTGATGGGTATTAAGAGTGAAGATGAAGCTGGATGTAGC  1245
            |||||||||||||||||||||||||||||||.||.||.|||||.|||||||||||||||||||||||.||||||
Sbjct  902  TTGGAAACAAGGACCAAAATGTCAAATTTAGAAAGTTAATGGGCATTAAGAGTGAAGATGAAGCTGGCTGTAGC  975

Query 1246  TCAGTTGATGAAGAAAGTTACAAGACTCTGAAGCAGCAGGAAGAAGTATTTCGAAATTTAGATGCTCAGTATGA  1319
            ||.|||||||||||||||||.||||||.|.|||||.||.||||||||.|||||.|||.|.||||||||||||||
Sbjct  976  TCCGTTGATGAAGAAAGTTATAAGACTTTAAAGCAACAAGAAGAAGTTTTTCGCAATCTTGATGCTCAGTATGA  1049

Query 1320  AATGGCAAGATCACAAACCCACACACAAAGAGGAATGGGTTTGGGTTTCACATCTTCAATGCGAGGAATGGATG  1393
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||.
Sbjct 1050  AATGGCAAGATCACAAACCCACACACAAAGAGGAATGGGTTTGGGTTTCACATCTTCAATGCGTGGAATGGATA  1123

Query 1394  CAGTT  1398
            |||||
Sbjct 1124  CAGTT  1128