Nucleotide Global Alignment

Description

• Query: TRCN0000489543
• Subject: XM_017320778.1
• Aligned Length: 1408
• Identities: 1003
• Gaps: 293

Alignment

Query    1  ATGATTTTATTTTGACTGATAGTGACCTGTTCGTTGCAACAAATTGATGAGCAATGCTTTTTTATAATGCCAAC  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  TTTGTACAAAAAAGCAGGCACCATGGCGGCTAGTGATACAGAGCGAGATGGACTAGCCCCAGAAAAGACATCAC  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  CAGATAGAGATAAGAAAAAAGAGCAGTCAGAAGTATCTGTTTCTCCTAGAGCTTCAAAACATCATTATTCAAGA  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  TCACGATCAAGGTCAAGAGAAAGAAAACGAAAGTCAGATAATGAAGGAAGAA--AAC--------ACAGGAGCC  286
                                                    ||||  .|||||  |||        |        
Sbjct    1  ----------------------------------------ATGA--TAAGAACCAACTTCTTGTTA--------  24

Query  287  GGAGCAGAAGCAAAGAGGGAAGAAGACATGAATCCAAAGATAAATCCTCTAAGAAACATAAGTCTGAGGAACAT  360
                       |||.||||||||||||||||.|||||||||||.||||||||||.|||.|||||||||||.||.
Sbjct   25  -----------AAACAGGGAAGAAGACATGAGTCCAAAGATAAGTCCTCTAAGAGACACAAGTCTGAGGAGCAC  87

Query  361  AATGACAAAGAACATTCTTCTGATAAAGGAAGAGAGCGACTAAATTCATCTGAAAATGGTGAGGACAGGCACAA  434
            |||||||||||||||||||||||.|||||||||||||||.|||||||||||||.||||||||||||||.||.||
Sbjct   88  AATGACAAAGAACATTCTTCTGACAAAGGAAGAGAGCGATTAAATTCATCTGAGAATGGTGAGGACAGACATAA  161

Query  435  ACGCAAAGAAAGAAAGTCATCAAGAGGCAGAAGTCACTCAAGATCTAGGTCTCGTGAAAGACGCCATCGTAGTA  508
            ||||||||||||.|||||||||.|.|||||||||||||||||.|||||.||.||||||||.||||||||.||||
Sbjct  162  ACGCAAAGAAAGGAAGTCATCACGGGGCAGAAGTCACTCAAGGTCTAGATCGCGTGAAAGGCGCCATCGCAGTA  235

Query  509  GAAGCAGGGAGCGGAAGAAGTCTCGATCCAGGAGTAGGGAGCGGAAGAAATCGAGATCCAGAAGCAGAGAGAGG  582
            ||||||||||..||||||||||||||||.|||||||||||.|||||.||.||..||||||||||||||||.|||
Sbjct  236  GAAGCAGGGAAAGGAAGAAGTCTCGATCGAGGAGTAGGGATCGGAAAAAGTCTCGATCCAGAAGCAGAGACAGG  309

Query  583  AAGAAATCGAGATCCAGAAGCAGGGAAAGAAAACGGCGGATCAGGTCTCGTTCCCGCTCAAGATCAAGACACAG  656
            |||||.||.|||||.|||||||||||.||.|||||..|||||||..||||||||||.||.|||||.||||||||
Sbjct  310  AAGAAGTCAAGATCTAGAAGCAGGGATAGGAAACGAAGGATCAGAACTCGTTCCCGATCCAGATCCAGACACAG  383

Query  657  GCATAGGACTAGAAGCAGGAGTAGGACAAGGAGTAGGAGTCGAGATAGAAAGAAGAGAATTGAAAAGCCGAGAA  730
            |||||||||||||||||||||.||..||||||||.|.|||||||||||||||||||||||||||||.||.||||
Sbjct  384  GCATAGGACTAGAAGCAGGAGCAGATCAAGGAGTCGAAGTCGAGATAGAAAGAAGAGAATTGAAAAACCAAGAA  457

Query  731  GATTTAGCAGAAGTTTAAGCCGGACTCCAAGTCCACGTCCCTTCAGAGGCAGAAACACAGCAATGGATGCACAG  804
            |||||||||||||..||||||||||.||.|||||||.||||||||||||||||||||||||||||||.||.||.
Sbjct  458  GATTTAGCAGAAGCCTAAGCCGGACACCTAGTCCACCTCCCTTCAGAGGCAGAAACACAGCAATGGACGCTCAA  531

Query  805  GAAGCTTTAGCTAGAAGGTTGGAAAGGGCAAAGAAATTACAAGAACAGCGAGAAAAGGAAATGGTTGAAAAACA  878
            |||||..|||||||.||.||.||||||||||||||||||||||||||.|||||||||||||||||||||||.||
Sbjct  532  GAAGCACTAGCTAGGAGATTAGAAAGGGCAAAGAAATTACAAGAACAACGAGAAAAGGAAATGGTTGAAAAGCA  605

Query  879  AAAACAACAAGAAATAGCTGCAGCTGCAGCTACTGGAGGTTCTGTTCTCAATGTTGCTGCCCTGTTGGCATCAG  952
            .||||||||||||||.||||||||||||||.|||||||||||.|||||.|||||||||||.|||||||||||||
Sbjct  606  GAAACAACAAGAAATGGCTGCAGCTGCAGCCACTGGAGGTTCAGTTCTTAATGTTGCTGCACTGTTGGCATCAG  679

Query  953  GAACACAAGTAACACCTCAGATAGCCATGGCAGCTCAGATGGCAGCCCTGCAAGCTAAAGCTTTGGCAGAGACA  1026
            ||||.||.||.||.|||||||||||.|||||||||||.|||||||||||||||||||||||.|||||||||||.
Sbjct  680  GAACGCAGGTTACTCCTCAGATAGCTATGGCAGCTCAAATGGCAGCCCTGCAAGCTAAAGCCTTGGCAGAGACT  753

Query 1027  GGAATAGCTGTTCCTAGCTACTATAACCCAGCCGCTGTTAATCCAATGAAATTTGCTGAACAAGAGAAAAAAAG  1100
            ||.|||||.||.||.||||||||.||||||||.|||||.|||||||||||.||||||||.|||||||||||.||
Sbjct  754  GGCATAGCAGTGCCCAGCTACTACAACCCAGCAGCTGTGAATCCAATGAAGTTTGCTGAGCAAGAGAAAAAGAG  827

Query 1101  GAAAATGCTTTGGCAGGGCAAGAAAGAAGGGGACAAATCCCAATCTGCTGAAATATGGGAAAAATTGAATTTTG  1174
            |||||||||.|||||.||||||||||||||.||||||||.||.|||||||||||.|||||||||||.|||||||
Sbjct  828  GAAAATGCTCTGGCAAGGCAAGAAAGAAGGCGACAAATCTCAGTCTGCTGAAATCTGGGAAAAATTAAATTTTG  901

Query 1175  GAAACAAGGACCAAAATGTCAAATTTAGGAAATTGATGGGTATTAAGAGTGAAGATGAAGCTGGATGTAGCTCA  1248
            ||||||||||||||||||||||||||||.||.||.|||||.|||||||||||||||||||||||.||||||||.
Sbjct  902  GAAACAAGGACCAAAATGTCAAATTTAGAAAGTTAATGGGCATTAAGAGTGAAGATGAAGCTGGCTGTAGCTCC  975

Query 1249  GTTGATGAAGAAAGTTACAAGACTCTGAAGCAGCAGGAAGAAGTATTTCGAAATTTAGATGCTCAGTATGAAAT  1322
            |||||||||||||||||.||||||.|.|||||.||.||||||||.|||||.|||.|.|||||||||||||||||
Sbjct  976  GTTGATGAAGAAAGTTATAAGACTTTAAAGCAACAAGAAGAAGTTTTTCGCAATCTTGATGCTCAGTATGAAAT  1049

Query 1323  GGCAAGATCACAAACCCACACACAAAGAGGAATGGGTTTGGGTTTCACATCTTCAATGCGAGGAATGGATGCAG  1396
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||.|||
Sbjct 1050  GGCAAGATCACAAACCCACACACAAAGAGGAATGGGTTTGGGTTTCACATCTTCAATGCGTGGAATGGATACAG  1123

Query 1397  TT  1398
            ||
Sbjct 1124  TT  1125