Nucleotide Global Alignment
Description
- Query:
- TRCN0000489543
- Subject:
- XR_001784647.1
- Aligned Length:
- 2280
- Identities:
- 1229
- Gaps:
- 908
Alignment
Query 1 ATGATTTTATTTTGACTGATAGTGACCTGTTCGTT---GCAACAAATTGA-----TGAGCAATGCTT------- 59
||.||.||.| || ||.|.||..| ||||.|.|||.| || ||.|.||||
Sbjct 1 ------TTCTTGTGCC--AT-----CCGGGTCTCTCGCGCAAGAGATTCAGTCTGTG-GCGAAGCTTCGAGGCG 60
Query 60 --------TTTTATAATGC---CAA-------------CTTTG----------TACAAAAAAGCAGGCACCATG 99
|.|| .|.||| ||| |||.| | ||||||| |..|||
Sbjct 61 GCCAGTACTGTT-GAGTGCGGGCAAGCAGAGGCGCCGCCTTAGCGGCCGGGACT-CAAAAAA------ATAATG 126
Query 100 GCGGCTAGTGATACAGAGCGAGATGGACTAGCCCCAGAAAAGACATCACCAGATAGAGATAAGAAAAAAGAGCA 173
|||||||.|||||||||.|||||||||.||||||.|||||||||||||||.||||||||.||||||||||||||
Sbjct 127 GCGGCTATTGATACAGAACGAGATGGATTAGCCCTAGAAAAGACATCACCGGATAGAGAAAAGAAAAAAGAGCA 200
Query 174 GTCAGAAGTATCTGTTTCTCCTAGAGCTTCAAAACATCATTATTCAAGATCACGATCAAGGTCAAGAGAAAGAA 247
||||||..|||||.|||||||||||||.||||||||||||||||||||.||..|.|||||||||||||||||||
Sbjct 201 GTCAGATATATCTATTTCTCCTAGAGCCTCAAAACATCATTATTCAAGGTCGAGGTCAAGGTCAAGAGAAAGAA 274
Query 248 AACGAAAGTCAGATAAT-GAAGGAAGAAAACACAGGAGCCGGAGCAGAAGCAAAGAGGGAAGAAGACATGAATC 320
|||||||.||||||.|| |||||||| |||||||||||||||||||||||||||||||||||||||||.||
Sbjct 275 AACGAAAATCAGATGATGGAAGGAAG----CACAGGAGCCGGAGCAGAAGCAAAGAGGGAAGAAGACATGAGTC 344
Query 321 CAAAGATAAATCCTCTAAGAAACATAAGTCTGAGGAACATAATGACAAAGAACATTCTTCTGATAAAGGAAGAG 394
|||||||||.||||||||||.|||.|||||||||||.||.|||||||||||||||||||||||.||||||||||
Sbjct 345 CAAAGATAAGTCCTCTAAGAGACACAAGTCTGAGGAGCACAATGACAAAGAACATTCTTCTGACAAAGGAAGAG 418
Query 395 AGCGACTAAATTCATCTGAAAATGGTGAGGACAGGCACAAACGCAAAGAAAGAAAGTCATCAAGAGGCAGAAGT 468
|||||.|||||||||||||.||||||||||||||.||.||||||||||||||.|||||||||.|.|||||||||
Sbjct 419 AGCGATTAAATTCATCTGAGAATGGTGAGGACAGACATAAACGCAAAGAAAGGAAGTCATCACGGGGCAGAAGT 492
Query 469 CACTCAAGATCTAGGTCTCGTGAAAGACGCCATCGTAGTAGAAGCAGGGAGCGGAAGAAGTCTCGATCCAGGAG 542
||||||||.|||||.||.||||||||.||||||||.||||||||||||||..||||||||||||||||.|||||
Sbjct 493 CACTCAAGGTCTAGATCGCGTGAAAGGCGCCATCGCAGTAGAAGCAGGGAAAGGAAGAAGTCTCGATCGAGGAG 566
Query 543 TAGGGAGCGGAAGAAATCGAGATCCAGAAGCAGAGAGAGGAAGAAATCGAGATCCAGAAGCAGGGAAAGAAAAC 616
||||||.|||||.||.||..||||||||||||||||.||||||||.||.|||||.|||||||||||.||.||||
Sbjct 567 TAGGGATCGGAAAAAGTCTCGATCCAGAAGCAGAGACAGGAAGAAGTCAAGATCTAGAAGCAGGGATAGGAAAC 640
Query 617 GGCGGATCAGGTCTCGTTCCCGCTCAAGATCAAGACACAGGCATAGGACTAGAAGCAGGAGTAGGACAAGGAGT 690
|..|||||||..||||||||||.||.|||||.|||||||||||||||||||||||||||||.||..||||||||
Sbjct 641 GAAGGATCAGAACTCGTTCCCGATCCAGATCCAGACACAGGCATAGGACTAGAAGCAGGAGCAGATCAAGGAGT 714
Query 691 AGGAGTCGAGATAGAAAGAAGAGAATTGAAAAGCCGAGAAGATTTAGCAGAAGTTTAAGCCGGACTCCAAGTCC 764
.|.|||||||||||||||||||||||||||||.||.|||||||||||||||||..||||||||||.||.|||||
Sbjct 715 CGAAGTCGAGATAGAAAGAAGAGAATTGAAAAACCAAGAAGATTTAGCAGAAGCCTAAGCCGGACACCTAGTCC 788
Query 765 ACGTCCCTTCAGAGGCAGAAACACAGCAATGGATGCACAGGAAGCTTTAGCTAG-------------------- 818
||.||||||||||||||||||||||||||||||.||.||.|||||..|||||||
Sbjct 789 ACCTCCCTTCAGAGGCAGAAACACAGCAATGGACGCTCAAGAAGCACTAGCTAGGAGTTCTCACAGTGTAACCT 862
Query 819 -------------------------------------------------------AAGGTTGGAAAGGGCAAAG 837
|||.||.||||||||||||
Sbjct 863 GATGTGCTGCTGCCCTGTGAAGCCAGCCTGGCAGAAACTCCACTGAACAGCAGCAAAGATTAGAAAGGGCAAAG 936
Query 838 AAATTACAAGAACAGCGAGAAAAGGAAATGGTTGAAAAACAAAAACAACAAGAAATAGCT---GCAGCTGCAGC 908
||||||||||||||.|||||||||||||||||||||||.||.||||||||||||||.||| |||||||||||
Sbjct 937 AAATTACAAGAACAACGAGAAAAGGAAATGGTTGAAAAGCAGAAACAACAAGAAATGGCTGCAGCAGCTGCAGC 1010
Query 909 TACTGGAGGTTCTGTTCTCAATGTTGCTGCCCTGTTGGCATCAGGAACACAAGTAACACCTCAGATAGCCATGG 982
.|||||||||||.|||||.|||||||||||.|||||||||||||||||.||.||.||.|||||||||||.||||
Sbjct 1011 CACTGGAGGTTCAGTTCTTAATGTTGCTGCACTGTTGGCATCAGGAACGCAGGTTACTCCTCAGATAGCTATGG 1084
Query 983 CAGCTCAGATGGCAGCCCTGCAAGCTAAAGCTTTGGCAGAGACAGGAATAGCTGTTCCTAGCTACTATAACCCA 1056
|||||||.|||||||||||||||||||||||.|||||||||||.||.|||||.||.||.||||||||.||||||
Sbjct 1085 CAGCTCAAATGGCAGCCCTGCAAGCTAAAGCCTTGGCAGAGACTGGCATAGCAGTGCCCAGCTACTACAACCCA 1158
Query 1057 GCCGCTGTTAATCCAATGAAATTTGCTGAACAAGAGAAAAAAAGGAAAATGCTTTGGCAGGGCAAGAAAGAAGG 1130
||.|||||.|||||||||||.||||||||.|||||||||||.|||||||||||.|||||.||||||||||||||
Sbjct 1159 GCAGCTGTGAATCCAATGAAGTTTGCTGAGCAAGAGAAAAAGAGGAAAATGCTCTGGCAAGGCAAGAAAGAAGG 1232
Query 1131 GGACAAATCCCAATCTGCTGAAATATGGGAAAAATTGAATTTTGGAAACAAGGACCAAAATGTCAAATTTAGGA 1204
.||||||||.||.|||||||||||.|||||||||||.|||||||||||||||||||||||||||||||||||.|
Sbjct 1233 CGACAAATCTCAGTCTGCTGAAATCTGGGAAAAATTAAATTTTGGAAACAAGGACCAAAATGTCAAATTTAGAA 1306
Query 1205 AATTGATGGGTATTAAGAGTGAAGATGAAGCTGGATGTAGCTCAGTTGATGAAGAAAGTTACAAGACTCTGAAG 1278
|.||.|||||.|||||||||||||||||||||||.||||||||.|||||||||||||||||.||||||.|.|||
Sbjct 1307 AGTTAATGGGCATTAAGAGTGAAGATGAAGCTGGCTGTAGCTCCGTTGATGAAGAAAGTTATAAGACTTTAAAG 1380
Query 1279 CAGCAGGAAGAAGTATTTCGAAATTTAGATGCTCAGTATGAAATGGCAAGATCACAAACCCACACACAAAGAGG 1352
||.||.||||||||.|||||.|||.|.|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 CAACAAGAAGAAGTTTTTCGCAATCTTGATGCTCAGTATGAAATGGCAAGATCACAAACCCACACACAAAGAGG 1454
Query 1353 AATGGGTTTGGGTTTCACATCTTCAATGCGAGGAATGGATGCAGTT---------------------------- 1398
||||||||||||||||||||||||||||||.|||||||||.|||||
Sbjct 1455 AATGGGTTTGGGTTTCACATCTTCAATGCGTGGAATGGATACAGTTTGAAAAAATATCAATTTGGGACTTTATA 1528
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 1529 GACTTGTTCTGATGTTGGGTCCTTGTTCACCACACAGCTAGTATTCTAGCTTGCATGGGTGTTGCATTGACTTT 1602
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 1603 AATTTATTGAAAAATACGATTTTTTTGTAAATATCAGATCAGTGATACTGGTGTTAGTGTTGTAATCAGGTTCA 1676
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 1677 ACCCACTTCCATTAAACTTGACAGGACTATAGAAGGACAATATTTTTTAGTTCATGAATTCTACTTTTCAAATA 1750
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 1751 TATTAAAGCTTCGGGTGGGATAAAATCTCATGCATAGATTTTTCTCGTGTCCGCTGTCTTGTGTACTTTTGTAC 1824
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 1825 TTAACCTTGTACAGTTATTTTCATCTCTTGAAACATGAAAGAAATGTTATGTAGATGTTCTTTAGAAGATCTGG 1898
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 1899 CCATTTGGTACATAATCCTGCACACAAGCTGGGCAGTGATAATAAAAATGGTTTTCTCAAAACTGGTGTTAATT 1972
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 1973 TAAGTTACCTGCTGTTTGGTTTGGGAGGTTGTTTGTTTGTTTTTATAATTAAAAAACTGGTTATAAATGCCTTT 2046
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2047 TTATAGCCTCTATTATAAGGTGTAGACAATATAGACAATACCACAGCGAGCTGTAAAGGGAGGGTGAGTGGAGC 2120
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2121 ATATTAAAATAGTACTGTTTCTACTGTAAGGCACAATTGGTGTGCAGTATTTGTTAATCCATGTTAATCAGGAA 2194
Query 1399 ------------------------------------------------------------ 1398
Sbjct 2195 ATAGACTAAAGTATTAAAGGGATGTGAGCACTTTTACTCTAATAAAGTGCCTTATAACAA 2254
