Nucleotide Global Alignment
Description
- Query:
- TRCN0000489564
- Subject:
- XR_376307.3
- Aligned Length:
- 2257
- Identities:
- 1136
- Gaps:
- 961
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CCTTGGCACTGAGGAGCTTGAAGCTTTGACACTGAGCCCAGGAGGTTTTGACTAGGCCAGGCTGTGCAGGTATG 74
Query 1 -----------------------------------------------------------------ATGAGCAAG 9
||||.||.|
Sbjct 75 TTTATGGAAAGGAATGAAGCCAGCAGGACATCAAAGTCCAGACTGCTGAGAACCATCAGTTTCAGATGAACACG 148
Query 10 GAGCTGGCAGCAATGGGGCCTGGAGCTTCAGGGGACGGGGTCAGGACTGAGACAGCTCCACACATAGCACTGGA 83
|||||.|..|||||||..||.||||..|||.||.|.||.|||||.||||||||| ||| || |.|
Sbjct 149 GAGCTTGTGGCAATGGAACCAGGAGTGTCAAGGAATGGAGTCAGAACTGAGACA-----ACA------AC-GAA 210
Query 84 CTCCAGAGTTGGTCTGCACGCCTACGACATCAGCGTGGTGGTCATCTACTTTGTCTTCGTCATTGCTGTGGGGA 157
|.|.||..|.||.||.||..||||.||||||...||||||||||||||.||||||||.||..||||||||||.|
Sbjct 211 CCCAAGCCTGGGGCTACATACCTATGACATCGTGGTGGTGGTCATCTATTTTGTCTTTGTTCTTGCTGTGGGAA 284
Query 158 TCTGGTCGTCCATCCGTGCAAGTCGAGGGACCATTGGCGGCTATTTCCTGGCCGGGAGGTCCATGAGCTGGTGG 231
|.|||||.||||||||||||||||||||||||.||||.||||||||||||||.|||||.|||||||.|||||||
Sbjct 285 TTTGGTCATCCATCCGTGCAAGTCGAGGGACCGTTGGTGGCTATTTCCTGGCTGGGAGATCCATGACCTGGTGG 358
Query 232 CCAATTGGAGCATCTCTGATGTCCAGCAATGTGGGCAGTGGCTTGTTCATCGGCCTGGCTGGGACAGGGGCTGC 305
|||||||||||||||||.||||||||||||||||||||||||||.||.||||||||||||||.|||||||||||
Sbjct 359 CCAATTGGAGCATCTCTAATGTCCAGCAATGTGGGCAGTGGCTTATTTATCGGCCTGGCTGGAACAGGGGCTGC 432
Query 306 CGGAGGCCTTGCCGTAGGTGGCTTCGAGTGGAACATGAGGAAATCAAGGTCTGGAGGAGACAGAGGGATCCATC 379
.|||||||||||.||.||||||||.|||||||||
Sbjct 433 TGGAGGCCTTGCTGTTGGTGGCTTTGAGTGGAAC---------------------------------------- 466
Query 380 CAAGGTCACACGGGAGGACTGGGGTCAGGTCCCAGGCAACCTGGCTGCTCCTGGCCCTTGGCTGGGTCTTCGTC 453
|||||||..|||||.||.|||||.||||||.||||.|||
Sbjct 467 -----------------------------------GCAACCTTCCTGCTTCTAGCCCTGGGCTGGATCTTTGTC 505
Query 454 CCTGTGTACATCGCAGCAGGTGTGGTCACAATGCCGCAGTATCTGAAGAAGCGATTTGGGGGCCAGAGGATCCA 527
|||||||||||.|||||.|||||||||||.|||||.|||||.||||||||.|||||||||||.|||||||||||
Sbjct 506 CCTGTGTACATAGCAGCTGGTGTGGTCACCATGCCACAGTACCTGAAGAAACGATTTGGGGGACAGAGGATCCA 579
Query 528 GGTGTACATGTCTGTCCTGTCTCTCATCCTCTACATCTTCACCAAGATCTCGACTGACATCTTCTCTGGAGCCC 601
||||||||||||.||.||.||||||||.||||||||||||||||||||.||||||||.||||||||||||||||
Sbjct 580 GGTGTACATGTCAGTTCTTTCTCTCATTCTCTACATCTTCACCAAGATATCGACTGATATCTTCTCTGGAGCCC 653
Query 602 TCTTCATCCAGATGGCATTGGGCTGGAACCTGTACCTCTCCACAGGGATCCTGCTGGTGGTGACTGCCGTCTAC 675
||||||||||||||||.|||||||||||.||.||.||||||||||..|||.|||||||||||||.||.||||||
Sbjct 654 TCTTCATCCAGATGGCCTTGGGCTGGAATCTCTATCTCTCCACAGTCATCTTGCTGGTGGTGACAGCTGTCTAC 727
Query 676 ACCATTGCAGGTGGCCTCATGGCCGTGATCTACACAGATGCTCTGCAGACGGTGATCATGGTAGGGGGAGCCCT 749
|||||||||||.|||||||..||.||||||||||||||||||||.|||||.|||||||||||.||||||||.||
Sbjct 728 ACCATTGCAGGGGGCCTCACAGCTGTGATCTACACAGATGCTCTACAGACTGTGATCATGGTTGGGGGAGCTCT 801
Query 750 GGTCCTCATGTTTCTGGGCTTTCAGGACGTGGGCTGGTACCCAGGCCTGGAGCAGCGGTACAGGCAGGCCATCC 823
|||||||||||||||||||||||||||.||.||||||||||||||||||.||||||..||.||.||||||||||
Sbjct 802 GGTCCTCATGTTTCTGGGCTTTCAGGAGGTTGGCTGGTACCCAGGCCTGCAGCAGCTCTATAGACAGGCCATCC 875
Query 824 CTAATGTCACAGTCCCCAACACCACCTGTCACCTCCCACGGCCCGATGCTTTCCACATGCTTCGGGACCCTGTG 897
|.|||..||||||.|||||.|||||||||||||||||||||||.|||||.||||||||||||||.||.||||||
Sbjct 876 CCAATACCACAGTTCCCAATACCACCTGTCACCTCCCACGGCCTGATGCCTTCCACATGCTTCGAGATCCTGTG 949
Query 898 AGCGGGGACATCCCTTGGCCAGGTCTCATTTTCGGGCTCACAGTGCTGGCCACCTGGTGTTGGTGCACAGACCA 971
|..||.||||||||.|||||||||||||||||.||.||||||||..||||||||||||||||||||||||||||
Sbjct 950 AATGGAGACATCCCCTGGCCAGGTCTCATTTTTGGCCTCACAGTCTTGGCCACCTGGTGTTGGTGCACAGACCA 1023
Query 972 GGTCATTGTGCAGCGGTCTCTCTCGGCCAAGAGTCTGTCTCATGCCAAGGGAGGCTCCGTGCTGGGGGGCTACC 1045
|||.|||||||||.||||||||.|||||||||.|||.||.|||||||||||||||||||||||.||||||||||
Sbjct 1024 GGTGATTGTGCAGAGGTCTCTCGCGGCCAAGAATCTTTCACATGCCAAGGGAGGCTCCGTGCTAGGGGGCTACC 1097
Query 1046 TGAAGATCCTCCCCATGTTCTTCATCGTCATGCCTGGCATGATCAGCCGGGCCCTGTTCCCAGACGAGGTGGGC 1119
|.|||||||||||.|||||||||||.|||||||||||||||||||||.|||||||||.||||||.||.||.|.|
Sbjct 1098 TAAAGATCCTCCCAATGTTCTTCATTGTCATGCCTGGCATGATCAGCAGGGCCCTGTACCCAGATGAAGTTGCC 1171
Query 1120 TGCGTGGACCCTGATGTCTGCCAAAGAATCTGTGGGGCCCGAGTGGGATGTTCCAACATTGCCTACCCTAAGTT 1193
||.|||||||||||..||||.||||||.|.|||||||||.||||.|||||.|||||.|||||||||||.|||.|
Sbjct 1172 TGTGTGGACCCTGACATCTGTCAAAGAGTGTGTGGGGCCAGAGTTGGATGCTCCAATATTGCCTACCCCAAGCT 1245
Query 1194 GGTCATGGCCCTCATGCCTGTTGGTCTGCGGGGGCTGATGATTGCCGTGATCATGGCCGCTCTCATGAGCTCAC 1267
|||.|||||.|||||||||||
Sbjct 1246 GGTTATGGCTCTCATGCCTGT----------------------------------------------------- 1266
Query 1268 TCACCTCCATCTTCAACAGCAGCAGCACCCTGTTCACCATTGATGTGTGGCAGCGCTTCCGCAGGAAGTCAACA 1341
.||||.|||||||||||..||||.||||||||||||||||||||||||.||.||.|.
Sbjct 1267 -----------------GGCAGTAGCACCCTGTTTGCCATAGATGTGTGGCAGCGCTTCCGCAGGCAGGCATCG 1323
Query 1342 GAGCAGGAGCTGATGGTGGTGGGCAGAGTGTTTGTGGTGTTCCTGGTTGTCATCAGCATCCTCTGGATCCCCAT 1415
|||||.||||||||||||||.|||||..||||.||.||.||||||||.||||||||||||||||||||||||||
Sbjct 1324 GAGCAAGAGCTGATGGTGGTAGGCAGGTTGTTCGTAGTCTTCCTGGTAGTCATCAGCATCCTCTGGATCCCCAT 1397
Query 1416 CATCCAAAGCTCCAACAGTGGGCAGCTCTTCGACTACATCCAGGCTGTCACCAGTTACCTGGCCCCACCCATCA 1489
||||||.||||||||.||||||||||||||.|||||||
Sbjct 1398 CATCCAGAGCTCCAATAGTGGGCAGCTCTTTGACTACA------------------------------------ 1435
Query 1490 CCGCTCTCTTCCTGCTGGCCATCTTCTGCAAGAGGGTCACAGAGCCCGGAGCTTTCTGGGGCCTCGTGTTTGGC 1563
Sbjct 1436 -------------------------------------------------------------------------- 1435
Query 1564 CTGGGAGTGGGGCTTCTGCGTATGATCCTGGAGTTCTCATACCCAGCGCCAGCCTGTGGGGAGGTGGACCGGAG 1637
Sbjct 1436 -------------------------------------------------------------------------- 1435
Query 1638 GCCAGCAGTGCTGAAGGACTTCCACTACCTGTACTTTGCAATCCTCCTCTGCGGGCTCACTGCCATCGTCATTG 1711
Sbjct 1436 -------------------------------------------------------------------------- 1435
Query 1712 TCATTGTCAGCCTCTGTACAACTCCCATCCCTGAGGAACAGCTCACACGCCTCACATGGTGGACTCGGAACTGC 1785
Sbjct 1436 -------------------------------------------------------------------------- 1435
Query 1786 CCCCTCTCTGAGCTGGAGAAGGAGGCCCACGAGAGCACACCGGAGATATCCGAGAGGCCAGCCGGGGAGTGCCC 1859
Sbjct 1436 -------------------------------------------------------------------------- 1435
Query 1860 TGCAGGAGGTGGAGCGGCAGAGAACTCGAGCCTGGGCCAGGAGCAGCCTGAAGCCCCAAGCAGGTCCTGGGGAA 1933
Sbjct 1436 -------------------------------------------------------------------------- 1435
Query 1934 AGTTGCTCTGGAGCTGGTTCTGTGGGCTCTCTGGAACACCGGAGCAGGCCCTGAGCCCAGCAGAGAAGGCTGCG 2007
Sbjct 1436 -------------------------------------------------------------------------- 1435
Query 2008 CTAGAACAGAAGCTGACAAGCATTGAGGAGGAGCCACTCTGGAGACATGTCTGCAACATCAATGCTGTCCTTTT 2081
Sbjct 1436 -------------------------------------------------------------------------- 1435
Query 2082 GCTGGCCATCAACATCTTCCTCTGGGGCTATTTTGCG 2118
Sbjct 1436 ------------------------------------- 1435
