Nucleotide Global Alignment

Description

Query:
TRCN0000489576
Subject:
NR_004843.2
Aligned Length:
4551
Identities:
1011
Gaps:
3370

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACTTCCTTGGTTCCGGACACAGTCCACGCAGTAACTTGTTTTTGCAGAGACTGATAGGCGGATCGGGCGTGGCC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CGAGCGCGCCCCACTCAGGGAAAGCTGCCGTCCCTCTTTGCCTTTGAGCGCCGCAGCCCTGAGAATCGCATCTG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GCTTGGAAACGGTCCCAGGACTGGAGCCACCAAGAAAGCCGAAGGCAGTCGCGAAGAGCCGAGGACGCCCAGAG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  ACTCTGCGGCTTCCGGGAAGCGGAACCGAGCCTACCCGGAAGGAGCCAACCTCACCTGAGGCTCGCTGAGCACC  296

Query    1  -------------------------------ATGGCGGCCGAGGCGACAGCTGTGGCCGGAAGCGGGGCTGTTG  43
                                           ||||||||.||.|.|||||..||.|.||||.|.||||||||.|
Sbjct  297  GGCAGGCGTTAAACCTAACGGAGCCCACGTCATGGCGGCAGACGGGACAGGGGTAGTCGGAGGAGGGGCTGTCG  370

Query   44  GCGGCTGCCTGGCCAAAGACGGCTTGCAGCAGTCTAAGTGCCCGGACACTACCCCAAAACGGCGGCGCGCCTCG  117
            |||||.|||||.||||.|||||.||||||.|..||||||||||.||..|.|.|||.||.|||||||||||.||.
Sbjct  371  GCGGCGGCCTGCCCAAGGACGGTTTGCAGGATGCTAAGTGCCCAGAGCCAATCCCCAATCGGCGGCGCGCTTCC  444

Query  118  TCGCTGTCGCGTGACGCCGAGCGCCGAGCCTACCAATGGTGCCGGGAGTACTTGGGCGGGGCCTGGCGCCGAGT  191
            ||||||||.||||||||..|||||||||||||.||.|||||||||||||||.|||||||||||||||||||||.
Sbjct  445  TCGCTGTCCCGTGACGCGCAGCGCCGAGCCTATCAGTGGTGCCGGGAGTACCTGGGCGGGGCCTGGCGCCGAGC  518

Query  192  GCAGCCCGAGGAGCTGAGGGTTTACCCCGTGAGCGGAGGCCTCAGCAACCTGCTCTTCCGCTGCTCGCTCCCGG  265
            ||.|||.|||||||||||.||||..|||||||||||||||||||||||||||||||||||.|||||.||.|||.
Sbjct  519  GCGGCCGGAGGAGCTGAGCGTTTGTCCCGTGAGCGGAGGCCTCAGCAACCTGCTCTTCCGATGCTCACTACCGA  592

Query  266  ACCACCTGCCCAGCGTTGGCGAGGAGCCCCGGGAGGTGCTTCTGCGGCTGTACGGAGCCATCTTGCAGGGCGTG  339
            |||||.|.|||||.||.||||.||||||||||||||||||.||.||.||.|||||.||||||.|||||||.||.
Sbjct  593  ACCACGTACCCAGTGTGGGCGGGGAGCCCCGGGAGGTGCTGCTACGACTCTACGGGGCCATCCTGCAGGGTGTA  666

Query  340  GACTCCCTGGTGCTAGAAAGCGTGATGTTCGCCATACTTGCGGAGCGGTCGCTGGGGCCCCAGCTGTACGGAGT  413
            ||||||.||||..||||||||||||||||||||||.||.||.||||||||.||.|||||||||||.||||||||
Sbjct  667  GACTCCTTGGTATTAGAAAGCGTGATGTTCGCCATTCTCGCAGAGCGGTCTCTAGGGCCCCAGCTTTACGGAGT  740

Query  414  CTTCCCAGAGGGCCGGCTGGAACAGTACATCCCA----------------------------------------  447
            .||.|||||||||||..|||||||||||.|||||                                        
Sbjct  741  GTTTCCAGAGGGCCGCTTGGAACAGTACCTCCCAGTAAGAGCCCAGTTTTTGTTGTTTTTACCCCAAGTCTTTA  814

Query  448  --------------------------------------------------------------------------  447
                                                                                      
Sbjct  815  CCCTTCCCAAAGTCTGCCTTCACATCCCAGGTAGGGAAATTTCCCTAAGACCTTGATCTCCTCCCATCCCGTAT  888

Query  448  -------------------------------------------------------AGTCGGCCATTGAAAACTC  466
                                                                   ||.|||||.||||||||||
Sbjct  889  CCCTTCCCCCTCCCGCCCCAGCCCCCTCACCACCCTGATAGGTTACTGGGTACAGAGCCGGCCGTTGAAAACTC  962

Query  467  AAGAGCTTCGAGAGCCAGTGTTGTCAGCAGCCATTGCCACGAAGATGGCGCAATTTCATGGCATGGAGATGCCT  540
            |||||||.||.||.|||||||||||.|.|||||||||.||||.||||||.|..||.|||||.|||||||||||.
Sbjct  963  AAGAGCTCCGGGACCCAGTGTTGTCGGGAGCCATTGCAACGAGGATGGCCCGTTTCCATGGTATGGAGATGCCC  1036

Query  541  TTCACCAAGGAGCCCCACTGGCTGTTTGGGACCATGGAGCGGTACCTAAAACAGATCCAGGACCTGCCCCCAAC  614
            |||||.||||||||||..|||.|||||||||||||||||||||||||.||.||||||||||||.||||..|.||
Sbjct 1037  TTCACTAAGGAGCCCCGATGGTTGTTTGGGACCATGGAGCGGTACCTGAAGCAGATCCAGGACTTGCCTTCCAC  1110

Query  615  TGGCCTCCCTGAGATGAACCTGCTGGAGATGTACAGCCTGAAGGATGAGATGGGCAACCTCAGGAAGTTACTAG  688
            ..||||.||..|||||||||||.|.||||||||||||||.|||||.||||||..||.|||||||||||||||||
Sbjct 1111  CAGCCTTCCCCAGATGAACCTGGTAGAGATGTACAGCCTCAAGGACGAGATGAACAGCCTCAGGAAGTTACTAG  1184

Query  689  AGTCTACCCCATCGCCAGTCGTCTTCTGCCACAATGACATCCAGGAAGGGAACATCTTGCTGCTCTCAGAGCCA  762
            |...||||||.||.|||||.|||||||||||||||||||||||||||||.|||||||||.||||.|||||||||
Sbjct 1185  ACGATACCCCGTCACCAGTGGTCTTCTGCCACAATGACATCCAGGAAGGAAACATCTTGTTGCTTTCAGAGCCA  1258

Query  763  GAAAATGCTGACAGCCTCATGCTGGTGGACTTCGAGTACAGCAGTTATAACTATAGGGGCTTTGACATTGGGAA  836
            ||.|.||.|||.|.|||||||.||||.||.||.||||||||.|||||||||||.||||||||||||||||||||
Sbjct 1259  GACAGTGATGATAACCTCATGTTGGTTGATTTTGAGTACAGTAGTTATAACTACAGGGGCTTTGACATTGGGAA  1332

Query  837  CCATTTTTGTGAGTGGGTTTATGATTATACTCACGAGGAATGGCCTTTCTACAAAGCAAGGCCCACAGACTACC  910
            .||||||||||||||||||||||||||||||.|.||.|||||||||||||||||||||||.|||||.|||||||
Sbjct 1333  TCATTTTTGTGAGTGGGTTTATGATTATACTTATGAAGAATGGCCTTTCTACAAAGCAAGACCCACGGACTACC  1406

Query  911  CCACTCAAGAACAGCAGTTGCATTTTATTCGTCATTACCTGGCAGAGGCAAAGAAAGGTGAGACCCTCTCCCAA  984
            |||||..||||||||||.|.|||||||||||.|||||.||||||||||...||||.|||||||.|||||||.||
Sbjct 1407  CCACTAGAGAACAGCAGCTCCATTTTATTCGCCATTATCTGGCAGAGGTTCAGAAGGGTGAGATCCTCTCCGAA  1480

Query  985  GAGGAGCAGAGAAAACTGGAAGAAGATTTGCTGGTAGAAGTCAGTCGGTATGCTCTGGCATCCCATTTCTTCTG  1058
            |||||.||||..||||.|||||||||.||||||.||||..||||||||||..|.||||||||.||.||.|||||
Sbjct 1481  GAGGAACAGAAGAAACGGGAAGAAGAATTGCTGCTAGAGATCAGTCGGTACTCCCTGGCATCTCACTTTTTCTG  1554

Query 1059  GGGTCTGTGGTCCATCCTCCAGGCATCCATGTCCACCATAGAATTTGGTTACTTGGACTATGCCCAGTCTCGGT  1132
            ||||||||||||||.|||.|||||.||.||||||||.|||||.||.||.||||||||.||||||||.|||||||
Sbjct 1555  GGGTCTGTGGTCCACCCTGCAGGCTTCGATGTCCACTATAGAGTTCGGCTACTTGGAGTATGCCCAATCTCGGT  1628

Query 1133  TCCAGTTCTACTTCCAGCAGAAGGGGCAGCTGACCAGTGTCCACTCC-TCATCC--------------------  1185
            |||||||||||||||||||||||||.||||||||.||| |||   || ||||||                    
Sbjct 1629  TCCAGTTCTACTTCCAGCAGAAGGGCCAGCTGACGAGT-TCC---CCATCATCCTGAGGATCCAACCCCACCTC  1698

Query 1186  --------------------------------------------------------------------------  1185
                                                                                      
Sbjct 1699  AAGTTTCTCCTGGAGCCTCCGGGGCAGGACCTTGGAGGGAGGGGCAGAGAGCAGACGACCCCCAGAGACGGGGC  1772

Query 1186  --------------------------------------------------------------------------  1185
                                                                                      
Sbjct 1773  TGTGCCTCAAAGTGCTGAATAAACCCCAGGATGGCGGAAGCACACCAGGCAGTAGCTTTCCAGTTCACTGTGAC  1846

Query 1186  --------------------------------------------------------------------------  1185
                                                                                      
Sbjct 1847  CCCAGACGGGGTCGACTTCCGGCTTAGTCGGGAGGCTCTGAGACACATCTACCTGTCTGGAATCAACTCCTGGA  1920

Query 1186  --------------------------------------------------------------------------  1185
                                                                                      
Sbjct 1921  AGAAACGCCTTATTCGAATCAAGAATGGCATCCTTAGGGGTGTGTACCCTGGCAGCCCCACCAGCTGGCTGGTT  1994

Query 1186  --------------------------------------------------------------------------  1185
                                                                                      
Sbjct 1995  GTTGTCATGGCAACAGTTGGTTCCAACTACTGCAAGGTGGACATCTCCATGGGACTGGTCGATTGCATCCAGAG  2068

Query 1186  --------------------------------------------------------------------------  1185
                                                                                      
Sbjct 2069  ATGCCTCCCGGAAAGGTATGGCCACTTTGGGACCCCACAGACAGAGGCACTTCTCAGCATGGTCATCTTCTCCA  2142

Query 1186  --------------------------------------------------------------------------  1185
                                                                                      
Sbjct 2143  CCGGAGTCTGGGCGACAGGCATTTTCTTCTTCCGACAAACCCTGAAGCTGCTGCTCTCCTACCACGGGTGGATG  2216

Query 1186  --------------------------------------------------------------------------  1185
                                                                                      
Sbjct 2217  TTCGAGATGCACAGCAAGACCAGCCATGCCACCAAGATCTGGGCTATCTGTGTCCGTCTCCTGTCCAGCCGGCG  2290

Query 1186  --------------------------------------------------------------------------  1185
                                                                                      
Sbjct 2291  GCCCATGCTCTACAGCTTCCAAACGTCACTGCCTAAGCTTCCTGTCCCCAGCGTGCCAGCCACAATTCACCGGT  2364

Query 1186  --------------------------------------------------------------------------  1185
                                                                                      
Sbjct 2365  ACTTGGATTCTGTGCGGCCCTTATTGGATGATGAAGCATATTACCGCATGGAGACATTGGCCAAGGAATTCCAG  2438

Query 1186  --------------------------------------------------------------------------  1185
                                                                                      
Sbjct 2439  GACAAGACTGCCCCCAGGCTGCAGAAATACCTGGTGCTCAAGTCATGGTGGGCAACTAACTATGTGAGTGACTG  2512

Query 1186  --------------------------------------------------------------------------  1185
                                                                                      
Sbjct 2513  GTGGGAAGAATATGTCTACCTCCGAAGCAGGAGCCCCCTCATGGTGAACAGCAACTATTATGCCATGGATTTTG  2586

Query 1186  --------------------------------------------------------------------------  1185
                                                                                      
Sbjct 2587  TGCTTATTAAGAACACAAATGTGCAAGCAGCCCGTCTAGGCAATGCCGTTCACGCCATGATCATGTATCGCCGC  2660

Query 1186  --------------------------------------------------------------------------  1185
                                                                                      
Sbjct 2661  AAACTGGACCGTGAAGAGATCAAGCCGACTTGCTACAGCACCTCTCAGAGAGCAGGCACGTGGCTGTCTACCAC  2734

Query 1186  --------------------------------------------------------------------------  1185
                                                                                      
Sbjct 2735  AAAGGTCGCTTCTTCAAGGTCTGGCTCTATGAGGGCTCGCGCCTGCTCAAGCCCCGAGACCTGGAGATGCAGTT  2808

Query 1186  --------------------------------------------------------------------------  1185
                                                                                      
Sbjct 2809  CCAGAGAATCCTCGACGACCCTTCCCCACCTCAGCCTGGGGAGGAGAAGCTGGCAGCCCTCACCGCAGGAGGAA  2882

Query 1186  --------------------------------------------------------------------------  1185
                                                                                      
Sbjct 2883  GGGTAGAGTGGGCAGAGGCACGTCAGACCTTCTTCAGCTCTGGCAAGAACAAGATGTCTCTGGACGCCATCGAA  2956

Query 1186  --------------------------------------------------------------------------  1185
                                                                                      
Sbjct 2957  CGTGCTGCTTTCTTTGTGACCCTGGATGAAGATTCTCATTGCTACAACCCTGACGATGAGACCAGTCTTAGCCT  3030

Query 1186  --------------------------------------------------------------------------  1185
                                                                                      
Sbjct 3031  CTACGGCAAAGCCTTGCTCCATGGCAACTGCTATAACAGGTGGTTTGACAAATCTTTCACCCTTATCTCCTGCA  3104

Query 1186  --------------------------------------------------------------------------  1185
                                                                                      
Sbjct 3105  AGAATGGCCTGTTAGGCCTCAACACCGAACACTCGTGGGCAGACGCGCCCATCATTGGGCACCTCTGGGAGTTT  3178

Query 1186  --------------------------------------------------------------------------  1185
                                                                                      
Sbjct 3179  GTCCTGGGCACTGATACCTTTCACCTGGGCTACACGGAGACAGGACACTGTGTGGGTGAGCCAAACACCACGTT  3252

Query 1186  --------------------------------------------------------------------------  1185
                                                                                      
Sbjct 3253  GCCACCCCCTCAGCGGCTGCCGTGGGACATTCCCGAGCAGTGCCGGGAAGCCATCGAGAACTCGTACCAAGTAG  3326

Query 1186  --------------------------------------------------------------------------  1185
                                                                                      
Sbjct 3327  CCAAGGCACTGGCCGATGACGTGGAGCTCTACTGCTTCCAGTTCTTACCCTTTGGCAAAGGTCTTATCAAGAAG  3400

Query 1186  --------------------------------------------------------------------------  1185
                                                                                      
Sbjct 3401  TGTAGGACCAGCCCCGACGCTTTTGTGCAGATTGCCCTACAGCTGGCTCATTTCCGGGACAAAGGCAAGTTCTG  3474

Query 1186  --------------------------------------------------------------------------  1185
                                                                                      
Sbjct 3475  CCTGACTTACGAGGCCTCGATGACAAGAATGTTCCGAGAGGGGCGGACTGAGACTGTGCGTTCCTGTACCAACG  3548

Query 1186  --------------------------------------------------------------------------  1185
                                                                                      
Sbjct 3549  AGTCCGCAGCCTTTGTGCAGGCCATGATGAAGGGGTCCCATAAGAAACAAGACCTCCAAGATCTCTTCCGGAAA  3622

Query 1186  --------------------------------------------------------------------------  1185
                                                                                      
Sbjct 3623  GCCTCCGAAAAGCACCAAAACATGTACCGCCTAGCCATGACAGGGGCTGGGATCGACCGGCACCTCTTCTGCCT  3696

Query 1186  --------------------------------------------------------------------------  1185
                                                                                      
Sbjct 3697  TTACATCGTCTCCAAGTACTTAGGAGTTAGCTCTCCTTTCCTGGCTGAGGTACTTTCTGAACCCTGGAGCCTCT  3770

Query 1186  --------------------------------------------------------------------------  1185
                                                                                      
Sbjct 3771  CCACCAGCCAGATCCCCCAGTTCCAGATCTGCATGTTTGACCCAAAACAGTATCCCAATCATCTGGGTGCTGGA  3844

Query 1186  --------------------------------------------------------------------------  1185
                                                                                      
Sbjct 3845  GGTGGCTTTGGTCCCGTGGCGGATGATGGCTACGGGGTCTCTTACATGATCGCAGGAGAAAACACCATGTTCTT  3918

Query 1186  --------------------------------------------------------------------------  1185
                                                                                      
Sbjct 3919  CCACATCTCCAGCAAATACTCAAGTTCAGAGACGAACGCCCAGCGCTTTGGGAACCACATCCGCCAAGCACTGT  3992

Query 1186  --------------------------------------------------------------------------  1185
                                                                                      
Sbjct 3993  TGGACATCGCCGAACTTTTCAAAATTTCCAAGACAGACAGCTGAGGAAAAGAGATACCCCAGCTGCCCTCTGGT  4066

Query 1186  --------------------------------------------------------------------------  1185
                                                                                      
Sbjct 4067  CCCCACCTGGTGGAAGAAGAGGCCTGTGGCCAGCTCACAGGCATAAGGGGTGGCGTGCACACACGCCCAGTTCG  4140

Query 1186  --------------------------------------------------------------------------  1185
                                                                                      
Sbjct 4141  GAGAACAGCTCTTGAGGCAGTGCTCCCCGGAGGAGGCAGTGCTCCCTGGGCAGATACTGCTCCTCTAGGGCCCC  4214

Query 1186  --------------------------------------------------------------------------  1185
                                                                                      
Sbjct 4215  CGCTGGAGGTGGGATTGGAGCAGCAGGGGAATTTTGATTTTTTTTTTTTTTTTTTGGCTTGGTAGATGTTAATA  4288

Query 1186  --------------------------------------------------------------------------  1185
                                                                                      
Sbjct 4289  AAAATAAGGCTGTATAATTCTTACTTGGCTGTTAGGTGCCTATGTTTTTGTTAGAGAACGATAAGGCCCTTTCC  4362

Query 1186  --------------------------------------------------------------------------  1185
                                                                                      
Sbjct 4363  TGCCCCAGCTCAGCCTAGGATGGAGGCGATGGAAGGGGTCGGAGAATGTTCATAATGGGCTTCTTACCTGCTTT  4436

Query 1186  --------------------------------------------------------------------------  1185
                                                                                      
Sbjct 4437  GAAATGGGTGCTCTTCTTGAATAATGCGGACTTGGAGAGCGCTGTCCAACCTCTCATGTGCACTTGGAATAAAT  4510

Query 1186  -------------------------------------  1185
                                                 
Sbjct 4511  TCTTACTTTAGAACCTTAAAAAAAAAAAAAAAAAAAA  4547

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