Nucleotide Global Alignment

Description

Query:
TRCN0000489649
Subject:
XM_006539992.2
Aligned Length:
2692
Identities:
2040
Gaps:
329

Alignment

Query    1  ATGGCGTGGCGGTGCCCCAGGATGGGCAGGGTCCCGCTGGCCTGGTGCTTGGCGCTGTGCGGCTGGGCGTGCAT  74
                                 ||||||||||||||||||||||||||.||||||||||||.||||||.|||  |
Sbjct    1  ---------------------ATGGGCAGGGTCCCGCTGGCCTGGTGGTTGGCGCTGTGCTGCTGGGGGTG--T  51

Query   75  G--GCCCCCAGGGGCACGCAGGCTGA---AGAAAGTCCCTTCGTGGGCAACCCAGGGAATATCACAGGTGCCCG  143
            |  ||||..|.||.|||.|||.|.||   .|..||.||.||.|||||.||||||||||||||||||||||||.|
Sbjct   52  GCAGCCCATAAGGACACACAGACCGAGGCTGGCAGCCCGTTTGTGGGGAACCCAGGGAATATCACAGGTGCCAG  125

Query  144  GGGACTCACGGGCACCCTTCGGTGTCAGCTCCAGGTTCAGGGAGAGCCCCCCGAGGTACATTGGCTTCGGGATG  217
            .|||||||||||.||.|||||||||.||||||||||||||||.||.|||||.|||||....||||||||.||||
Sbjct  126  AGGACTCACGGGGACACTTCGGTGTGAGCTCCAGGTTCAGGGGGAACCCCCTGAGGTGGTGTGGCTTCGAGATG  199

Query  218  GACAGATCCTGGAGCTCGCGGACAGCACCCAGACCCAGGTGCCCCTGGGTGAGGA-TGAACAGGATGACTGGAT  290
            ||||||||||.||.||.||.||.|.||||||||||||||||||.|||||.||.|| || .||.|||||.||||.
Sbjct  200  GACAGATCCTAGAACTGGCTGATAACACCCAGACCCAGGTGCCTCTGGGCGAAGACTG-GCAAGATGAATGGAA  272

Query  291  AGTGGTCAGCCAGCTCAGAATCACCTCCCTGCAGCTTTCCGA--CACGGGACAGTACCAGTGTTTGGTGTTTCT  362
            |||.|||||.||||||||||||.|..|||||||.|||||.||  ||.|||  |||||||||||.|||||..|||
Sbjct  273  AGTTGTCAGTCAGCTCAGAATCTCAGCCCTGCAACTTTCAGATGCAGGGG--AGTACCAGTGTATGGTGCATCT  344

Query  363  GGGACATCAGACCTTCGTGTCCCAGCCTGGCTATGTTGGGCTGGAGGGCTTGCCTTACTTCCTGGAGGAGCCCG  436
            .|.|...|.||||||.|||||.|||||.||||.|||.||||||||.||..|.||.|||||||||||||||||.|
Sbjct  345  AGAAGGACGGACCTTTGTGTCTCAGCCGGGCTTTGTAGGGCTGGAAGGTCTCCCGTACTTCCTGGAGGAGCCTG  418

Query  437  AAGACAGGACTGTGGCCGCCAACACCCCCTTCAACCTGAGCTGCCAAGCTCAGGGACCCCCAGAGCCCGTGGAC  510
            |.||||...|||||.|.|||||||||||.||||||||.||||||||.||.|||||||||||.||.||||||..|
Sbjct  419  AGGACAAAGCTGTGCCTGCCAACACCCCTTTCAACCTAAGCTGCCAGGCCCAGGGACCCCCGGAACCCGTGACC  492

Query  511  CTACTCTGGCTCCAGGATGCTGTCCCCCTGGCCACGGCTC-CAGGTCACGGCCCCCAGCGCAGCCTGCATGTTC  583
            |||||||||||.||.||||||||||||||||||.|.| || ||||.|||.||.||||||.|||.|||||...||
Sbjct  493  CTACTCTGGCTTCAAGATGCTGTCCCCCTGGCCCCAG-TCACAGGACACAGCTCCCAGCACAGTCTGCAAACTC  565

Query  584  CAGGGCTGAACAAGACATCCTCTTTCTCCTGCGAAGCCCATAACGCCAAGGGGGTCACCACATCCCGCACAGCC  657
            ||||.||||||||||||||.||||||||.||.||||||||.||.||||||||.||||||||.||||||||||||
Sbjct  566  CAGGCCTGAACAAGACATCTTCTTTCTCATGTGAAGCCCACAATGCCAAGGGAGTCACCACCTCCCGCACAGCC  639

Query  658  ACCATCACAGTGCTCCCCCAGCAGCCCCGTAACCTCCACCTGGTCTCCCGCCAACCCACGGAGCTGGAGGTGGC  731
            |||||||||||||||||||||..|||.|...|.||||||.||||.|||.|.|||||.||||||||.|||||.||
Sbjct  640  ACCATCACAGTGCTCCCCCAGAGGCCTCACCATCTCCACGTGGTTTCCAGACAACCTACGGAGCTAGAGGTAGC  713

Query  732  TTGGACTCCAGGCCTGAGCGGCATCTACCCCCTGACCCACTGCACCCTGCAGGCTGTGCTGTCAGACGATGGGA  805
            ||||||.||.||||||||.|||||||||||.||.||||||||||.|||||||||.||||||||||||||||||.
Sbjct  714  TTGGACCCCTGGCCTGAGTGGCATCTACCCGCTCACCCACTGCAACCTGCAGGCCGTGCTGTCAGACGATGGGG  787

Query  806  TGGGCATCCAGGC-GGGAGAACCAGACCCCCCAGAGGAGCCCCTCACCTCGCAAGCATCCGTGCCCCCCCATCA  878
            ||||.|| |.||| ||||.|..||||.||.||.||.||.||||||||||.|||||.|||.|||||||||||.||
Sbjct  788  TGGGTAT-CTGGCTGGGAAAGTCAGATCCTCCTGAAGACCCCCTCACCTTGCAAGTATCAGTGCCCCCCCACCA  860

Query  879  GCTTCGGCTAGGCAGCCTCCATCCTCACACCCCTTATCACATCCGCGTGGCATGCACCAGCAGCCAGGGCCCCT  952
            |||||||||.|..|..||||.||||||||||||.|||||||||||..|..|.||||.|||||||||||||||||
Sbjct  861  GCTTCGGCTGGAAAAGCTCCTTCCTCACACCCCGTATCACATCCGGATATCCTGCAGCAGCAGCCAGGGCCCCT  934

Query  953  CATCCTGGACCCACTGGCTTCCTGTGGAGACGCCGGAGGGAGTGCCCCTGGGCCCCCCTGAGAACATTAGTGCT  1026
            ||.|.||||||||||||||||||||||||||..|.|||||                                  
Sbjct  935  CACCTTGGACCCACTGGCTTCCTGTGGAGACCACAGAGGG----------------------------------  974

Query 1027  ACGCGGAATGGGAGCCAGGCCTTCGTGCATTGGCAAGAGCCCCGGGCGCCCCTGCAGGGTACCCTGTTAGGGTA  1100
                                                                                      
Sbjct  975  --------------------------------------------------------------------------  974

Query 1101  CCGGCTGGCGTATCAAGGCCAGGACACCCCAGAGGTGCTAATGGACATAGGGCTAAGGCAAGAGGTGACCCTGG  1174
                                                                                      
Sbjct  975  --------------------------------------------------------------------------  974

Query 1175  AGCTGCAGGGGGACGGGTCTGTGTCCAATCTGACAGTGTGTGTGGCAGCCTACACTGCTGCTGGGGATGGACCC  1248
                                                                                      
Sbjct  975  --------------------------------------------------------------------------  974

Query 1249  TGGAGCCTCCCAGTACCCCTGGAGGCCTGGCGCCCAGGGCAAGCACAGCCAGTCCACCAGCTGGTGAAGGAACC  1322
                                               ||||||||.|||||||.|||||||.|||||||..|||||
Sbjct  975  -----------------------------------AGGGCAAGGACAGCCACTCCACCATCTGGTGAGTGAACC  1013

Query 1323  TTCAACTCCTGCCTTCTCGTGGCCCTGGTGGTATGTACTGCTAGGAGCAGTCGTGGCCGCTGCCTGTGTCCTCA  1396
            ..||.|||..||||||||||||||.|||||||||||||||||.||||||.|.|||||.||.|||||.|||||||
Sbjct 1014  CCCACCTCGCGCCTTCTCGTGGCCTTGGTGGTATGTACTGCTGGGAGCACTTGTGGCTGCCGCCTGCGTCCTCA  1087

Query 1397  TCTTGGCTCTCTTCCTTGTCCACCGGCGAAAGAAGGAGACCCGTTATGGAGAAGTGTTTGAACCAACAGTGGAA  1470
            |||||||.||.|||||||||||.|||.|.|||||||||||.||.|||||.||.||||||||.|||||.||||||
Sbjct 1088  TCTTGGCCCTGTTCCTTGTCCATCGGAGGAAGAAGGAGACTCGATATGGGGAGGTGTTTGAGCCAACCGTGGAA  1161

Query 1471  AGAGGTGAACTGGTAGTCAGGTACCGCGTGCGCAAGTCCTACAGTCGTCGGACCACTGAAGCTACCTTGAACAG  1544
            ||||||||||||||||||||||||||.||.||.|||||||||||.||.||||||||||||||.|||||||||||
Sbjct 1162  AGAGGTGAACTGGTAGTCAGGTACCGTGTCCGAAAGTCCTACAGCCGGCGGACCACTGAAGCCACCTTGAACAG  1235

Query 1545  CTTGGGCATCAGTGAAGAGCTGAAGGAGAAGCTGCGGGATGTGATGGTGGACCGGCACAAGGTGGCCCTGGGGA  1618
            ..||||||||||||||||||||||||||||.||.||.||.||.|||||.||.|||||.|||||||||.||||||
Sbjct 1236  TCTGGGCATCAGTGAAGAGCTGAAGGAGAAACTACGAGACGTCATGGTAGATCGGCATAAGGTGGCCTTGGGGA  1309

Query 1619  AGACTCTGGGAGAGGGAGAGTTTGGAGCTGTGATGGAAGGCCAGCTCAACCAGGACGACTCCATCCTCAAGGTG  1692
            ||||.||||||||.|||||.|||||.||||||||||||||.||||||||.|||||.|||||||||||||||||.
Sbjct 1310  AGACCCTGGGAGAAGGAGAATTTGGCGCTGTGATGGAAGGTCAGCTCAATCAGGATGACTCCATCCTCAAGGTC  1383

Query 1693  GCTGTGAAGACGATGAAGATTGCCATCTGCACGAGGTCAGAGCTGGAGGATTTCCTGAGTGAAGCGGTCTGCAT  1766
            |||||||||||.|||||.||||||||||||||.||.|||||||||||||||||||||||||||||.||||||||
Sbjct 1384  GCTGTGAAGACCATGAAAATTGCCATCTGCACAAGATCAGAGCTGGAGGATTTCCTGAGTGAAGCTGTCTGCAT  1457

Query 1767  GAAGGAATTTGACCATCCCAACGTCATGAGGCTCATCGGTGTCTGTTTCCAGGGTTCTGAACGAGAGAGCTTCC  1840
            |||||||||||||||.||||||||||||||||||||.||.||||||||.|||||.|||||..|||||.|.||||
Sbjct 1458  GAAGGAATTTGACCACCCCAACGTCATGAGGCTCATTGGCGTCTGTTTTCAGGGCTCTGACAGAGAGGGTTTCC  1531

Query 1841  CAGCACCTGTGGTCATCTTACCTTTCATGAAACATGGAGACCTACACAGCTTCCTCCTCTATTCCCGGCTCGGG  1914
            |||.|||||||||||||||.||||||||||||||.||||||||||||||.||||||||.||.||||||||||||
Sbjct 1532  CAGAACCTGTGGTCATCTTGCCTTTCATGAAACACGGAGACCTACACAGTTTCCTCCTGTACTCCCGGCTCGGG  1605

Query 1915  GACCAGCCAGTGTACCTGCCCACTCAGATGCTAGTGAAGTTCATGGCAGACATCGCCAGTGGCATGGAGTATCT  1988
            |||||||||||||.|||||||||||||||||||||||||||||||||.|||||.||||||||.||||||||.||
Sbjct 1606  GACCAGCCAGTGTTCCTGCCCACTCAGATGCTAGTGAAGTTCATGGCCGACATTGCCAGTGGTATGGAGTACCT  1679

Query 1989  GAGTACCAAGAGATTCATACACCGGGACCTGGCGGCCAGGAACTGCATGCTGAATGAGAACATGTCCGTGTGTG  2062
            |||||||||||||||||||||.|||||||||||.||||||||||||||||||||||||||||||||||||||||
Sbjct 1680  GAGTACCAAGAGATTCATACATCGGGACCTGGCTGCCAGGAACTGCATGCTGAATGAGAACATGTCCGTGTGTG  1753

Query 2063  TGGCGGACTTCGGGCTCTCCAAGAAGATCTACAATGGGGACTACTACCGCCAGGGACGTATCGCCAAGATGCCA  2136
            ||||.|||||||||||||||||||||||||||||.|||||.|||||||||||.||.||.||.||||||||||||
Sbjct 1754  TGGCAGACTTCGGGCTCTCCAAGAAGATCTACAACGGGGATTACTACCGCCAAGGGCGCATTGCCAAGATGCCA  1827

Query 2137  GTCAAGTGGATTGCCATTGAGAGTCTAGCTGACCGTGTCTACACCAGCAAGAGCGATGTGTGGTCCTTCGGGGT  2210
            ||||||||||||||.|||||||||||.||.||.||.|||||||||||||||||||||||||||||||||||.||
Sbjct 1828  GTCAAGTGGATTGCTATTGAGAGTCTGGCAGATCGGGTCTACACCAGCAAGAGCGATGTGTGGTCCTTCGGTGT  1901

Query 2211  GACAATGTGGGAGATTGCCACAAGAGGCCAAACCCCATATCCGGGCGTGGAGAACAGCGAGATTTATGACTATC  2284
            |||||||||||||||.|||||..||||||||||.||.|||||.||.|||||||||||.||||||||.|||||.|
Sbjct 1902  GACAATGTGGGAGATCGCCACCCGAGGCCAAACTCCCTATCCAGGGGTGGAGAACAGTGAGATTTACGACTACC  1975

Query 2285  TGCGCCGGGGAAATCGCCTGAAGCAGCCTGCGGACTGTCTGGATGGACTGTATGCCTTGATGTCGCGGTGCTGG  2358
            ||||.|..||||||||.|||||.|||||||.||||||||||||.||.|||||||||.|||||||.|||||||||
Sbjct 1976  TGCGTCAAGGAAATCGGCTGAAACAGCCTGTGGACTGTCTGGACGGCCTGTATGCCCTGATGTCTCGGTGCTGG  2049

Query 2359  GAGCTAAATCCCCAGGACCGGCCAAGTTTTACAGAGCTGCGGGAAGATTTGGAGAACACACTGAAGGCCTTGCC  2432
            ||.||.||.||.|..|||||||||||||||.|.|||||.||||||||.||||||||||||||||||||..||||
Sbjct 2050  GAACTGAACCCTCGAGACCGGCCAAGTTTTGCGGAGCTCCGGGAAGACTTGGAGAACACACTGAAGGCTCTGCC  2123

Query 2433  TCCTGCCCAGGAGCCTGACGAAATCCTCTATGTCAACATGGATGAGGGTGGAGGTTATCCTGAACCCCCTGGAG  2506
            .|||||.||||||||.||.|||||||||||||||||||||||||||||.|||.|..|.|.||||||||.|||.|
Sbjct 2124  CCCTGCTCAGGAGCCAGATGAAATCCTCTATGTCAACATGGATGAGGGCGGAAGCCACCTTGAACCCCGTGGGG  2197

Query 2507  CTGCAGGAGGAGCTGACCCCCCAACCCAGCCAGACCCTAAGGATTCCTGTAGCTGCCTCACTGCGGCTGAGGTC  2580
            ||||.|||||||||||||||||||||||.||.||.||||||||||||||||||||.||||||||.|||||.|||
Sbjct 2198  CTGCTGGAGGAGCTGACCCCCCAACCCAACCTGATCCTAAGGATTCCTGTAGCTGTCTCACTGCAGCTGACGTC  2271

Query 2581  CATCCTGCTGGACGCTATGTCCTCTGCCCTTCCACAACCCCTAGCCCCGCTCAGCCTGCTGATAGGGGCTCCCC  2654
            ||..|.|||||||||||||||||.||.|||||.|||.||||..|.|||.|||.|.|||||||.||.||||.|||
Sbjct 2272  CACTCAGCTGGACGCTATGTCCTTTGTCCTTCTACAGCCCCAGGACCCACTCTGTCTGCTGACAGAGGCTGCCC  2345

Query 2655  AGCAGCCCCAGGGCAGGAGGATGGTGCC  2682
            ||||.|.||||||||||||||.||.|||
Sbjct 2346  AGCACCTCCAGGGCAGGAGGACGGAGCC  2373

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.