Nucleotide Global Alignment
Description
- Query:
- TRCN0000489782
- Subject:
- NR_146209.1
- Aligned Length:
- 5603
- Identities:
- 1407
- Gaps:
- 4196
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TCTCTGCTGACCCGGAAGCAGAGCTGTGCAGCTGAGGCGCCGCCGTGGAGCCGCCTTGGAGCCACCGCCCCCTC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCCGCTTCGCCGCTGCGTTGGGGAACCTGGACCGCGGCGGCGCCGGGTTTCCCTCATGATCCCGGGCGGGTGGC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGCGGCGGCAGAGGCGGCGGGAGGATGACCTCTTACCGGGAGCGGAGTGCCGACCTGGCCCGTTTCTACACTGT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CACCGAGCCCCAGCGACACCCGAGGGGCTACACAGTATATAAGGTCACCGCCCGGGTTGTTTCACGAAGAAATC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CAGAGGATGTCCAGGAGATAATTGTATGGAAGAGATACAGTGATTTTAAGAAACTACACAAAGAACTATGGCAA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ATTCACAAAAACTTATTCCGACATTCAGAGTTGTTTCCTCCATTTGCTAAAGGAATAGTGTTTGGGCGATTTGA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TGAAACTGTTATCGAAGAGAGAAGACAATGTGCTGAAGACCTGCTACAGTTCTCTGCCAATATTCCTGCTCTTT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 ACAATAGTAAACAGCTTGAAGACTTTTTCAAGGGTGGAATAATTAATGATAGTTCTGAATTAATTGGTCCTGCT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GAAGCTCACTCAGATTCCCTCATTGATACCTTTCCTGAGTGTAGTACGGAAGGCTTCTCCAGTGACAGTGATCT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GGTATCTCTTACTGTTGATGTGGATTCTCTTGCTGAGTTAGATGATGGAATGGCTTCCAATCAAAATTCTCCCA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TTAGAACTTTTGGTCTCAATCTTTCTTCGGATTCTTCAGCACTAGGGGCTGTTGCTTCTGACAGTGAACAGAGC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AAAACAGAAGAAGAACGGGAAAGTCGTAGCCTCTTTCCTGGCAGTTTAAAGCCGAAGCTTGGCAAGAGAGATTA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TTTGGAGAAAGCAGGAGAATTAATAAAGCTGGCTTTAAAAAAGGAAGAAGAAGACGACTATGAAGCTGCTTCTG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 ATTTTTATAGGAAGGGAGTTGATTTACTCCTAGAAGGTGTTCAAGGAGAGTCAAGCCCTACCCGTCGAGAAGCT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GTGAAGAGAAGAACAGCCGAGTACCTCATGCGGGCAGAAAGTATCTCTAGTCTTTATGGGAAACCTCAGCTTGA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TGATGTATCTCAGCCTCCAGGATCACTAAGTTCAAGGCCCCTTTGGAACCTAAGGAGCCCTGCCGAGGAGCTGA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 AGGCCTTCAGAGTCCTTGGGGTGATTGACAAGGTGGCAAACTGTGGTCATATATCAGTAAATTTCTAAACAGAA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 GTCCTGAAGAAAGCTTTGACATCAAGGAAGTGAAAAAACCTACACTTGCAAAAGTTCACCTGCAGCAGCCAACT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TCTAGTCCTCAGGACAGCAGTAGCTTTGAATCCAGAGGAAGTGATGGTGGAAGCATGCTTAAAGCTCTGCCTTT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GAAGAGTAGTCTTACTCCAAGTTCTCAAGATGACAGCAACCAGGAAGATGATGGCCAAGATAGCTCTCCAAAGT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GGCCAGATTCTGGTTCAAGTTCAGAAGAAGAATGTACTACTAGTTATTTAACATTATGCAATGAATATGGGCAA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GAAAAGATTGAACCAGGGTCTTTGAATGAGGAGCCCTTCATGAAGACTGAAGGGAATGGTGTTGATACAAAAGC 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TATTAAAAGCTTCCCAGCACACCTTGCTGCTGACAGTGACAGCCCCAGCACACAGCTGAGAGCTCACGAGCTGA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 AGTTCTTCCCCAACGATGACCCAGAAGCAGTTAGTTCTCCAAGAACATCAGATTCCCTCAGTAGATCAAAAAAT 1776
Query 1 ------ATGGAATTCTTTAGGATAGACAGTAAGGATAGCGCAAGTGAACTCCTGGGACTTGACTTTGGAGAAAA 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 AGCCCCATGGAATTCTTTAGGATAGACAGTAAGGATAGCGCAAGTGAACTCCTGGGACTTGACTTTGGAGAAAA 1850
Query 69 ATTGTATAGTCTAAAATCAGAACCTTTGAAACCATTCTTTACTCTTCCAGATGGAGACAGTGCTTCTAGGAGTT 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 ATTGTATAGTCTAAAATCAGAACCTTTGAAACCATTCTTTACTCTTCCAGATGGAGACAGTGCTTCTAGGAGTT 1924
Query 143 TTAATACTAGTGAAAGCAAGGTAGAGTTTAAAGCTCAGGACACCATTAGCAGGGGCTCAGATGACTCAGTGCCA 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 TTAATACTAGTGAAAGCAAGGTAGAGTTTAAAGCTCAGGACACCATTAGCAGGGGCTCAGATGACTCAGTGCCA 1998
Query 217 GTTATTTCATTTAAAGATGCTGCTTTTGATGATGTCAGTGGTACTGATGAAGGAAGACCTGATCTTCTTGTAAA 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 GTTATTTCATTTAAAGATGCTGCTTTTGATGATGTCAGTGGTACTGATGAAGGAAGACCTGATCTTCTTGTAAA 2072
Query 291 TTTACCTGGTGAATTGGAGTCAACAAGAGAAGCTGCAGCAATGGGACCTACTAAGTTTACACAAACTAATATAG 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 TTTACCTGGTGAATTGGAGTCAACAAGAGAAGCTGCAGCAATGGGACCTACTAAGTTTACACAAACTAATATAG 2146
Query 365 GGATAATAGAAAATAAACTCTTGGAAGCCCCTGATGTTTTATGCCTCAGGCTTAGTACTGAACAATGCCAAGCA 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147 GGATAATAGAAAATAAACTCTTGGAAGCCCCTGATGTTTTATGCCTCAGGCTTAGTACTGAACAATGCCAAGCA 2220
Query 439 CATGAGGAGAAAGGCATAGAGGAACTGAGTGATCCCTCTGGGCCCAAATCCTATAGTATAACAGAGAAACACTA 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221 CATGAGGAGAAAGGCATAGAGGAACTGAGTGATCCCTCTGGGCCCAAATCCTATAGTATAACAGAGAAACACTA 2294
Query 513 TGCACAGGAGGATCCCAGGATGTTATTTGTAGCAGCTGTTGATCATAGTAGTTCAGGAGATATGTCTTTGTTAC 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295 TGCACAGGAGGATCCCAGGATGTTATTTGTAGCAGCTGTTGATCATAGTAGTTCAGGAGATATGTCTTTGTTAC 2368
Query 587 CCAGCTCAGATCCTAAGTTTCAAGGACTTGGAGTGGTTGAGTCAGCAGTAACTGCAAACAACACAGAAGAAAGC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369 CCAGCTCAGATCCTAAGTTTCAAGGACTTGGAGTGGTTGAGTCAGCAGTAACTGCAAACAACACAGAAGAAAGC 2442
Query 661 TTATTCCGTATTTGTAGTCCACTCTCAGGTGCTAATGAATATATTGCAAGCACAGACACTTTAAAAACAGAAGA 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443 TTATTCCGTATTTGTAGTCCACTCTCAGGTGCTAATGAATATATTGCAAGCACAGACACTTTAAAAACAGAAGA 2516
Query 735 AGTATTGCTGTTTACAGATCAGACTGATGATTTGGCTAAAGAGGAACCAACTTCTTTATTCCAGAGAGACTCTG 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517 AGTATTGCTGTTTACAGATCAGACTGATGATTTGGCTAAAGAGGAACCAACTTCTTTATTCCAGAGAGACTCTG 2590
Query 809 AGACTAAGGGTGAAAGTGGTTTAGTGCTAGAAGGAGACAAGGAAATACATCAGATTTTTGAGGACCTTGATAAA 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591 AGACTAAGGGTGAAAGTGGTTTAGTGCTAGAAGGAGACAAGGAAATACATCAGATTTTTGAGGACCTTGATAAA 2664
Query 883 AAATTAGCACTAGCCTCCAGGTTTTACATCCCAGAGGGCTGCATTCAAAGATGGGCAGCTGAAATGGTGGTAGC 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2665 AAATTAGCACTAGCCTCCAGGTTTTACATCCCAGAGGGCTGCATTCAAAGATGGGCAGCTGAAATGGTGGTAGC 2738
Query 957 CCTTGATGCTTTACATAGAGAGGGAATTGTGTGCCGCGATTTGAACCCAAACAACATCTTATTGAATGATAG-- 1028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2739 CCTTGATGCTTTACATAGAGAGGGAATTGTGTGCCGCGATTTGAACCCAAACAACATCTTATTGAATGATAGAG 2812
Query 1029 -------------------------------------------------------------------------- 1028
Sbjct 2813 GTCAGGAACTTTTGCAAATGCATTTCTTTTTATTCGCTGTTGCTTCCAATTAACTGAGTAGGCGTTTTATCTTG 2886
Query 1029 -------------------------------------------------------------------------- 1028
Sbjct 2887 TAATTAGTATCTTCATTTCCTGTCTAGAGCTTCATTATCAGTGCAGCAAATTCACCCCCAGTAATAGCTTCTAG 2960
Query 1029 -------------------------------------------------------------------------- 1028
Sbjct 2961 TACTTAATGATGCCATTATTCTTAATGATACTGTTTTTAGCTACAAAAGGAGTAATTACAGTTCACTTCTGCAG 3034
Query 1029 -----------------------------------------------AGGACACATTCAGCTAACGTATTTTAG 1055
|||||||||||||||||||||||||||
Sbjct 3035 AAAATGGAAGAGAAAAATGTTTTGATTTCTCCTGTCGTTTTGTTTTTAGGACACATTCAGCTAACGTATTTTAG 3108
Query 1056 CAGGTGGAGTGAGGTTGAAGATTCCTGTGACAGCGATGCCATAGAGAGAATGTACTGTGCCCCAGAGGTTGGAG 1129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3109 CAGGTGGAGTGAGGTTGAAGATTCCTGTGACAGCGATGCCATAGAGAGAATGTACTGTGCCCCAGAGGTTGGAG 3182
Query 1130 CAATCACTGAAGAAACTGAAGCCTGTGATTGGTGGAGTTTGGGTGCTGTCCTCTTTGAACTTCTCACTGGCAAG 1203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3183 CAATCACTGAAGAAACTGAAGCCTGTGATTGGTGGAGTTTGGGTGCTGTCCTCTTTGAACTTCTCACTGGCAAG 3256
Query 1204 ACTCTGGTTGAATGCCATCCAGCAGGAATAAATACTCACACTACTTTGAACATGCCAGAATGTGTCTCTGAAGA 1277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3257 ACTCTGGTTGAATGCCATCCAGCAGGAATAAATACTCACACTACTTTGAACATGCCAGAATGTGTCTCTGAAGA 3330
Query 1278 GGCTCGCTCACTCATTCAACAGCTCTTGCAGTTCAATCCTCTGGAACGACTTGGTGCTGGAGTTGCTGGTGTTG 1351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3331 GGCTCGCTCACTCATTCAACAGCTCTTGCAGTTCAATCCTCTGGAACGACTTGGTGCTGGAGTTGCTGGTGTTG 3404
Query 1352 AAGATATCAAATCTCATCCATTTTTTACCCCTGTGGATTGGGCAGAACTGATGAGA------------------ 1407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3405 AAGATATCAAATCTCATCCATTTTTTACCCCTGTGGATTGGGCAGAACTGATGAGATGAACGTAATGCAGGGTT 3478
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 3479 ATCTTCACACATTCTGATCTTCTCTGTGACAGGCATCTCCAGCACTGAGGCACCTCTGACTCACAGTTACTTAT 3552
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 3553 GGAGCACCAAAGCATTTGGATAAAGACCGTTATAGGAAATGGGGGGGAAATGGCTAAAAGAGAACAATTCGTTT 3626
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 3627 ACAATTACAAGATATTAGCTAATTGTGCCAGGGGCTGTTATATACATATATACACAACCAAGGTGTGATCTGAA 3700
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 3701 TTTAATCCACATTTGGTGTTGCAGATGAGTTGTAAAGCCAACTGAAAGAGTTCCTTCAAGAAGTTCCTCTGATA 3774
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 3775 GGAAGCTAGAAGTGTAGAATGAAGTTTTACTTGACAGAAGGACCTTTACATGGCAGCTAACAGTGCTTTTTGCT 3848
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 3849 GACCAGGATTGGTTTATATGATTAAATTAATATTTGCTTAATAATACACTAAAAGTATATGAACAATGTCATCA 3922
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 3923 ATGAAACTTAAAAGCGAGAAAAAAGAATATACACATAATTTCTGACGGAAAACCTGTACCCTGATGCTGTATAA 3996
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 3997 TGTATGTTGAATGTGGTCCCAGATTATTTCTGTAAGAAGACACTCCATGTTGTCAGCTTTGTACTCTTTGTTGA 4070
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 4071 TACTGCTTATTTAGAGAAGGGTTCATATAAACACTCACTCTGTGTCTTCAACAGCATCTTTCTTTCCCCATCTT 4144
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 4145 TCTATTTTCTGCACCCTCTGCTTGTTCCCTCATATTCTGTTCTTCCGACTCCTGCTAACACACATGCAACAAAA 4218
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 4219 AAGGGAAGGGAGTGCTTATTTCCCTTTGTGTAAGGACTAAGAAATCATGATATCAAATAAACATGGTGAAACAT 4292
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 4293 TAGATCTCTTCTTCATTTAATAACCCTCCCCCCTTTTTTTCCTTGAAGAAATGCGTCTGTTCCTTTCCTTGTGA 4366
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 4367 AATATTATCAGTTTCTACCATTGCTTCTCATGCTTGACTTTGTTTTACTTTTTGGCTTGGTATACTAAGAAGCA 4440
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 4441 AAGGATCTCATCTAAATGGAATTGAATGGCAGTCCTAGTTTGTTACTTATGGTGATGAGATTTTCAGATTTGAA 4514
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 4515 CTAATCTATTTGACGTGATTTAGAAAGAATGTAAGTATTCACACATCTCCAAACATTTGTATTTGTTACTTCTT 4588
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 4589 TTTGTTGCTAAGGTAGCTCCTGTAGTTATGCATTGTTGCAAAAATTTACAAATGTTTTAAAAGTGTTAACATCT 4662
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 4663 GTTTTTTTTTAAACGTTAGCCAAAGAAGAAGTCACTATTTCCAAGTTAGAAACCACCAGAAATAATTGAAATTT 4736
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 4737 TTGATATGTTCTAATCTTCTTTGCATTTTTGAGATCTGTGTGAGAGCCCAACCCCACTCCAGGAGCATCTGTAC 4810
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 4811 AGCTTCCATCTGCCATCGACCAGGTCCTCTCATCAAATTAAATGGAACAGAAAATGCTCTAGTGAAACAAAGGA 4884
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 4885 AATGTGCAAGCATTTTTCCTTTTTCTATTATTCTATTTCCCTTTTTCCTTTTTGGCCCCCTTATAATCCAAACC 4958
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 4959 CCAGCTGAAAGGCTGCAACAACACCAGGTTGGGGAGCAGGTCACCAGGATCATAGTTCAGTCAAAATGACATCA 5032
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 5033 CTCCCTGGAACTAGATTTCAACTCACTAGTCCCCTGGCCTCATAACAGGAACTTATGCAGGTGAGACACAAGAA 5106
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 5107 TGACTTCCTGTGTAGGACTAGTAGGAAATCTGCAAGTACTTAGAGCTGGCCATTACAGAACTTCCTTCCAGAAG 5180
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 5181 TGCCCTGTGACATGAAAGTAGGACTTCACAACTAAGGTGAAGATCCCTGCCCTACCACATGATTTGAGTCTCTT 5254
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 5255 GGATTCAAAGGACATTAATGTCAACAGATGGTTGCCATGTCAGTCTGTTGACACAATTCCATTGCTTCAGTTTC 5328
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 5329 TCCCCTTTTCTCTCTATATGTTTGGTTGGAGCTTGTGCCTAATGTAAATACATCATTCATAATTAGAATGGACA 5402
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 5403 TTAATTATTTTAGTAATAAACACAGGATAAATAGCTTTGGGGTGATGAACCAGAGTCTGTTTTTATTTTATGGT 5476
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 5477 GTGTACATATTTTAAGCTGTACTTCTGTGAATGGTACTGATTTTTGTGGTTGTTTTTTTTTTATATTTTGTTTG 5550
Query 1408 ----------------------------------------------------- 1407
Sbjct 5551 TTTAAGCAGAAGAGTGGAATATGGGGTCAAAATCATAAAAGAAGTTGCCATGA 5603
