Nucleotide Global Alignment

Description

Query:
TRCN0000489818
Subject:
XR_001750187.1
Aligned Length:
2596
Identities:
1385
Gaps:
1185

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GAGGGTGCTCCCACTTAGAGGTCACGCGCGGCGTCGGGCGTTCCTGAGACCGTCGGGCTCCCTGGCTCGGTCAC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GTGGGCTCAGGCACTACTCCCCTCTACCCTCCTCTCGGTCTTTAAAAGGAAGAAGGGGCTTATCGTTAAGTCGC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TTGTGATCTTTTCAGTTTCTCCAGCTGCTGGCTTTTTGGACACCCACTCCCCCGCCAGGAGGCAGTTGCAAGCG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CGGAGGCTGCGAGAAATAACTGCCTCTTGAAACTTGCAGGGCGAAGAGCAGGCGGCGAGCGCTGGGCCGGGGAG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GGACCACCCGAGCTGCGACGGGCTCTGGGGCTGCGGGGCAGGGCTGGCGCCCGGAGCCTGAGCTGCAGGAGGTG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CGCTCGCTTTCCTCAACAGGTGGCGGCGGGGCGCGCGCCGGGAGACCCCCCCTAATGCGGGAAAAGCACGTGTC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CGCATTTTAGAGAAGGCAAGGCCGGTGTGTTTATCTGCAAGCCATTATACTTGCCCACGAATCTTTGAGAACAT  518

Query    1  ---------------------------------------------------------ATGGATATAAAAAACTC  17
                                                                     |||||||||||||||||
Sbjct  519  TATAATGACCTTTGTGCCTCTTCTTGCAAGGTGTTTTCTCAGCTGTTATCTCAAGACATGGATATAAAAAACTC  592

Query   18  ACCATCTAGCCTTAATTCTCCTTCCTCCTACAACTGCAGTCAATCCATCTTACCCCTGGAGCACGGCTCCATAT  91
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  ACCATCTAGCCTTAATTCTCCTTCCTCCTACAACTGCAGTCAATCCATCTTACCCCTGGAGCACGGCTCCATAT  666

Query   92  ACATACCTTCCTCCTATGTAGACAGCCACCATGAATATCCAGCCATGACATTCTATAGCCCTGCTGTGATGAAT  165
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  ACATACCTTCCTCCTATGTAGACAGCCACCATGAATATCCAGCCATGACATTCTATAGCCCTGCTGTGATGAAT  740

Query  166  TACAGCATTCCCAGCAATGTCACTAACTTGGAAGGTGGGCCTGGTCGGCAGACCACAAGCCCAAATGTGTTGTG  239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  TACAGCATTCCCAGCAATGTCACTAACTTGGAAGGTGGGCCTGGTCGGCAGACCACAAGCCCAAATGTGTTGTG  814

Query  240  GCCAACACCTGGGCACCTTTCTCCTTTAGTGGTCCATCGCCAGTTATCACATCTGTATGCGGAACCTCAAAAGA  313
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  GCCAACACCTGGGCACCTTTCTCCTTTAGTGGTCCATCGCCAGTTATCACATCTGTATGCGGAACCTCAAAAGA  888

Query  314  GTCCCTGGTGTGAAGCAAGATCGCTAGAACACACCTTACCTGTAAACAGAGAGACACTGAAAAGGAAGGTTAGT  387
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  GTCCCTGGTGTGAAGCAAGATCGCTAGAACACACCTTACCTGTAAACAGAGAGACACTGAAAAGGAAGGTTAGT  962

Query  388  GGGAACCGTTGCGCCAGCCCTGTTACTGGTCCAGGTTCAAAGAGGGATGCTCACTTCTGCGCTGTCTGCAGCGA  461
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  GGGAACCGTTGCGCCAGCCCTGTTACTGGTCCAGGTTCAAAGAGGGATGCTCACTTCTGCGCTGTCTGCAGCGA  1036

Query  462  TTACGCATCGGGATATCACTATGGAGTCTGGTCGTGTGAAGGATGTAAGGCCTTTTTTAAAAGAAGCATTCAAG  535
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  TTACGCATCGGGATATCACTATGGAGTCTGGTCGTGTGAAGGATGTAAGGCCTTTTTTAAAAGAAGCATTCAAG  1110

Query  536  GACATAATGATTATATTTGTCCAGCTACAAATCAGTGTACAATCGATAAAAACCGGCGCAAGAGCTGCCAGGCC  609
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  GACATAATGATTATATTTGTCCAGCTACAAATCAGTGTACAATCGATAAAAACCGGCGCAAGAGCTGCCAGGCC  1184

Query  610  TGCCGACTTCGGAAGTGTTACGAAGTGGGAATGGTGAAGTGTGGCTCCCGGAGAGAGAGATGTGGGTACCGCCT  683
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  TGCCGACTTCGGAAGTGTTACGAAGTGGGAATGGTGAAGTGTGGCTCCCGGAGAGAGAGATGTGGGTACCGCCT  1258

Query  684  TGTGCGGAGACAGAGAAGTGCCGACGAGCAGCTGCACTGTGCCGGCAAGGCCAAGAGAAGTGGCGGCCACGCGC  757
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  TGTGCGGAGACAGAGAAGTGCCGACGAGCAGCTGCACTGTGCCGGCAAGGCCAAGAGAAGTGGCGGCCACGCGC  1332

Query  758  CCCGAGTGCGGGAGCTGCTGCTGGACGCCCTGAGCCCCGAGCAGCTAGTGCTCACCCTCCTGGAGGCTGAGCCG  831
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  CCCGAGTGCGGGAGCTGCTGCTGGACGCCCTGAGCCCCGAGCAGCTAGTGCTCACCCTCCTGGAGGCTGAGCCG  1406

Query  832  CCCCATGTGCTGATCAGCCGCCCCAGTGCGCCCTTCACCGAGGCCTCCATGATGATGTCCCTGACCAAGTTGGC  905
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  CCCCATGTGCTGATCAGCCGCCCCAGTGCGCCCTTCACCGAGGCCTCCATGATGATGTCCCTGACCAAGTTGGC  1480

Query  906  CGACAAGGAGTTGGTACACATGATCAGCTGGGCCAAGAAGATTCCCGGCTTTGTGGAGCTCAGCCTGTTCGACC  979
            ||||||||||||||||||||||||||||||||||||||||||||||                            
Sbjct 1481  CGACAAGGAGTTGGTACACATGATCAGCTGGGCCAAGAAGATTCCC----------------------------  1526

Query  980  AAGTGCGGCTCTTGGAGAGCTGTTGGATGGAGGTGTTAATGATGGGGCTGATGTGGCGCTCAATTGACCACCCC  1053
                                                                                      
Sbjct 1527  --------------------------------------------------------------------------  1526

Query 1054  GGCAAGCTCATCTTTGCTCCAGATCTTGTTCTGGACAGGGATGAGGGGAAATGCGTAGAAGGAATTCTGGAAAT  1127
                                                 |||||||||||||||||||||||||||||||||||||
Sbjct 1527  -------------------------------------GGGATGAGGGGAAATGCGTAGAAGGAATTCTGGAAAT  1563

Query 1128  CTTTGACATGCTCCTGGCAACTACTTCAAGGTTTCGAGAGTTAAAACTCCAACACAAAGAATATCTCTGTGTCA  1201
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1564  CTTTGACATGCTCCTGGCAACTACTTCAAGGTTTCGAGAGTTAAAACTCCAACACAAAGAATATCTCTGTGTCA  1637

Query 1202  AGGCCATGATCCTGCTCAATTCCAGTATGTACCCTCTGGTCACAGCGACCCAGGATGCTGACAGCAGCCGGAAG  1275
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1638  AGGCCATGATCCTGCTCAATTCCAGTATGTACCCTCTGGTCACAGCGACCCAGGATGCTGACAGCAGCCGGAAG  1711

Query 1276  CTGGCTCACTTGCTGAACGCCGTGACCGATGCTTTGGTTTGGGTGATTGCCAAGAGCGGCATCTCCTCCCAGCA  1349
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1712  CTGGCTCACTTGCTGAACGCCGTGACCGATGCTTTGGTTTGGGTGATTGCCAAGAGCGGCATCTCCTCCCAGCA  1785

Query 1350  GCAATCCATGCGCCTGGCTAACCTCCTGATGCTCCTGTCCCACGTCAGGCATGCGAG----TAACAAGGGC---  1416
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    .|| ||||.|   
Sbjct 1786  GCAATCCATGCGCCTGGCTAACCTCCTGATGCTCCTGTCCCACGTCAGGCATGCGAGGGCAGAA-AAGGCCTCT  1858

Query 1417  ------------------------------------------------------ATGGAACA-------TCTGC  1429
                                                                  |||||.||       |||..
Sbjct 1859  CAAACACTCACCTCATTTGGAATGAAGATGGAGACTCTTTTGCCTGAAGCAACGATGGAGCAGTGACCCTCTAA  1932

Query 1430  TCAA--------CATGAAGTGCAAAAATGT--GGTCCCAGT---------GTATGACCTGCTGCTGGAGATGC-  1483
            ||||        |.|.|||   ||||||.|  |||..||.|         || |..|||    |||| ||| | 
Sbjct 1933  TCAACTCGGTGGCCTAAAG---AAAAATCTTGGGTAACATTTTCACTTCAGT-TTCCCT----CTGG-GAT-CA  1996

Query 1484  -TG-AATGCCCACG------------------------------TGCTTCGCGGGTGCAAGT------------  1513
             || |||  |||.|                              |.|||.|       ||||            
Sbjct 1997  TTGTAAT--CCATGAAAAAAATAATTTTAAAGAAAGAGTTAAAATACTTTG-------AAGTTAGTTATGTGGT  2061

Query 1514  ------CCTCC------------ATCACGGGGTCCGAGTGCAGCCCGGCA----GAGGACAGTAAAAGC-AAAG  1564
                  ||.||            ||||    .|||.|           ||    ||..||.|||||.|| ||||
Sbjct 2062  TAAAAACCACCTTCCTTTCTATTATCA----ATCCAA-----------CAATTTGATAACTGTAAACGCTAAAG  2120

Query 1565  ---------------------------------------AGGGCTCCCAGA------ACCCACAGTCTCAG---  1590
                                                   ||||||..||||      |||||     |.||   
Sbjct 2121  TGAAGACGGATTCTCTTCAGATGGTCTCCTTAACTGCCCAGGGCTTGCAGATGTCTCACCCA-----TGAGGGG  2189

Query 1591  --------------------------------------------------------------------------  1590
                                                                                      
Sbjct 2190  CACCAATGTAGAAAGCTGAGGCTTCATCTACTGATGAGCTTCACTGGTTTCCCCTGAGGTTTGTGCTTTGGCAG  2263

Query 1591  --------------------------------------------------------------------------  1590
                                                                                      
Sbjct 2264  AGAAGGGGAGGAGGGGACTGGGATTGTGTGGTCAGCTGTGCCTGCCAACAGATGCAGGTTAGGAACTGTGTTCA  2337

Query 1591  --------------------------------------------------------------------------  1590
                                                                                      
Sbjct 2338  GTATCTTCCAATAAGAAAGGGGAAATGCCGATGCCTATCCTCTTTGTTTAGGTAGAAAGTAAAATGCTACTGGA  2411

Query 1591  ------  1590
                  
Sbjct 2412  CTTAAA  2417

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