Nucleotide Global Alignment
Description
- Query:
- TRCN0000489880
- Subject:
- XM_006716441.1
- Aligned Length:
- 3404
- Identities:
- 1856
- Gaps:
- 1547
Alignment
Query 1 ATGAAGTATTCTTGCTGTGCTCTGGTTTTGGCTGTCCTGGGCACAGAATTGCTGGGAAGCCTCTGTTCGACTGT 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 CAGATCCCCGAGGTTCAGAGGACGGATACAGCAGGAACGAAAAAACATCCGACCCAACATTATTCTTGTGCTTA 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 CCGATGATCAAGATGTGGAGCTGGGGTCCCTGCAAGTCATGAACAAAACGAGAAAGATTATGGAACATGGGGGG 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 GCCACCTTCATCAATGCCTTTGTGACTACACCCATGTGCTGCCCGTCACGGTCCTCCATGCTCACCGGGAAGTA 296
Sbjct 1 -------------------------------------------------------------------------- 0
Query 297 TGTGCACAATCACAATGTCTACACCAACAACGAGAACTGCTCTTCCCCCTCGTGGCAGGCCATGCATGAGCCTC 370
Sbjct 1 -------------------------------------------------------------------------- 0
Query 371 GGACTTTTGCTGTATATCTTAACAACACTGGCTACAGAACAGCCTTTTTTGGAAAATACCTCAATGAATATAAT 444
Sbjct 1 -------------------------------------------------------------------------- 0
Query 445 GGCAGCTACATCCCCCCTGGGTGGCGAGAATGGCTTGGATTAATCAAGAATTCTCGCTTCTATAATTACACTGT 518
Sbjct 1 -------------------------------------------------------------------------- 0
Query 519 TTGTCGCAATGGCATCAAAGAAAAGCATGGATTTGATTATGCAAAGGACTACTTCACAGACTTAATCACTAACG 592
Sbjct 1 -------------------------------------------------------------------------- 0
Query 593 AGAGCATTAATTACTTCAAAATGTCTAAGAGAATGTATCCCCATAGGCCCGTTATGATGGTGATCAGCCACGCT 666
Sbjct 1 -------------------------------------------------------------------------- 0
Query 667 GCGCCCCACGGCCCCGAGGACTCAGCCCCACAGTTTTCTAAACTGTACCCCAA--TGCTTCCCAACACAT--AA 736
| |||| || ||
Sbjct 1 ----------------------------------------------------ATGTGCT---------ATGGAA 13
Query 737 CTCCTAGTTATAACTATGCACCAAATATGGATAAACACTGGATTATGCAGTACACAGGACCAATGCTGCCCATC 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 14 CTCCTAGTTATAACTATGCACCAAATATGGATAAACACTGGATTATGCAGTACACAGGACCAATGCTGCCCATC 87
Query 811 CACATGGAATTTACAAACATTCTACAGCGCAAAAGGCTCCAGACTTTGATGTCAGTGGATGATTCTGTGGAGAG 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 88 CACATGGAATTTACAAACATTCTACAGCGCAAAAGGCTCCAGACTTTGATGTCAGTGGATGATTCTGTGGAGAG 161
Query 885 GCTGTATAACATGCTCGTGGAGACGGGGGAGCTGGAGAATACTTACATCATTTACACCGCCGACCATGGTTACC 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 162 GCTGTATAACATGCTCGTGGAGACGGGGGAGCTGGAGAATACTTACATCATTTACACCGCCGACCATGGTTACC 235
Query 959 ATATTGGGCAGTTTGGACTGGTCAAGGGGAAATCCATGCCATATGACTTTGATATTCGTGTGCCTTTTTTTATT 1032
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 ATATTGGGCAGTTTGGACTGGTCAAGGGGAAATCCATGCCATATGACTTTGATATTCGTGTGCCTTTTTTTATT 309
Query 1033 CGTGGTCCAAGTGTAGAACCAGGATCAATAGTCCCACAGATCGTTCTCAACATTGACTTGGCCCCCACGATCCT 1106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 CGTGGTCCAAGTGTAGAACCAGGATCAATAGTCCCACAGATCGTTCTCAACATTGACTTGGCCCCCACGATCCT 383
Query 1107 GGATATTGCTGGGCTCGACACACCTCCTGATGTGGACGGCAAGTCTGTCCTCAAACTTCTGGACCCAGAAAAGC 1180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 384 GGATATTGCTGGGCTCGACACACCTCCTGATGTGGACGGCAAGTCTGTCCTCAAACTTCTGGACCCAGAAAAGC 457
Query 1181 CAGGTAACAGGTTTCGAACAAACAAGAAGGCCAAAATTTGGCGTGATACATTCCTAGTGGAAAGAGGCAAATTT 1254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 458 CAGGTAACAGGTTTCGAACAAACAAGAAGGCCAAAATTTGGCGTGATACATTCCTAGTGGAAAGAGGCAAATTT 531
Query 1255 CTACGTAAGAAGGAAGAATCCAGCAAGAATATCCAACAGTCAAATCACTTGCCCAAATATGAACGGGTCAAAGA 1328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 CTACGTAAGAAGGAAGAATCCAGCAAGAATATCCAACAGTCAAATCACTTGCCCAAATATGAACGGGTCAAAGA 605
Query 1329 ACTATGCCAGCAGGCCAGGTACCAGACAGCCTGTGAACAACCGGGGCAGAAGTGGCAATGCATTGAGGATACAT 1402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 ACTATGCCAGCAGGCCAGGTACCAGACAGCCTGTGAACAACCGGGGCAGAAGTGGCAATGCATTGAGGATACAT 679
Query 1403 CTGGCAAGCTTCGAATTCACAAGTGTAAAGGACCCAGTGACCTGCTCACAGTCCGGCAGAGCACGCGGAACCTC 1476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 680 CTGGCAAGCTTCGAATTCACAAGTGTAAAGGACCCAGTGACCTGCTCACAGTCCGGCAGAGCACGCGGAACCTC 753
Query 1477 TACGCTCGCGGCTTCCATGACAAAGACAAAGAGTGCAGTTGTAGGGAGTCTGGTTACCGTGCCAGCAGAAGCCA 1550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 754 TACGCTCGCGGCTTCCATGACAAAGACAAAGAGTGCAGTTGTAGGGAGTCTGGTTACCGTGCCAGCAGAAGCCA 827
Query 1551 AAGAAAGAGTCAACGGCAATTCTTGAGAAACCAGGGGACTCCAAAGTACAAGCCCAGATTTGTCCATACTCGGC 1624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 AAGAAAGAGTCAACGGCAATTCTTGAGAAACCAGGGGACTCCAAAGTACAAGCCCAGATTTGTCCATACTCGGC 901
Query 1625 AGACACGTTCCTTGTCCGTCGAATTTGAAGGTGAAATATATGACATAAATCTGGAAGAAGAAGAAGAATTGCAA 1698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 AGACACGTTCCTTGTCCGTCGAATTTGAAGGTGAAATATATGACATAAATCTGGAAGAAGAAGAAGAATTGCAA 975
Query 1699 GTGTTGCAACCAAGAAACATTGCTAAGCGTCATGATGAAGGCCACAAGGGGCCAAGAGATCTCCAGGCTTCCAG 1772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 976 GTGTTGCAACCAAGAAACATTGCTAAGCGTCATGATGAAGGCCACAAGGGGCCAAGAGATCTCCAGGCTTCCAG 1049
Query 1773 TGGTGGCAACAGGGGCAGGATGCTGGCAGATAGCAGCAACGCCGTGGGCCCACCTACCACTGTCCGAGTGACAC 1846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1050 TGGTGGCAACAGGGGCAGGATGCTGGCAGATAGCAGCAACGCCGTGGGCCCACCTACCACTGTCCGAGTGACAC 1123
Query 1847 ACAAGTGTTTTATTCTTCCCAATGACTCTATCCATTGTGAGAGAGAACTGTACCAATCGGCCAGAGCGTGGAAG 1920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1124 ACAAGTGTTTTATTCTTCCCAATGACTCTATCCATTGTGAGAGAGAACTGTACCAATCGGCCAGAGCGTGGAAG 1197
Query 1921 GACCATAAGGCATACATTGACAAAGAGATTGAAGCTCTGCAAGATAAAATTAAGAATTTAAGAGAAGTGAGAGG 1994
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 GACCATAAGGCATACATTGACAAAGAGATTGAAGCTCTGCAAGATAAAATTAAGAATTTAAGAGAAGTGAGAGG 1271
Query 1995 ACATCTGAAGAGAAGGAAGCCTGAGGAATGTAGCTGCAGTAAACAAAGCTATTACAATAAAGAGAAAGGTGTAA 2068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1272 ACATCTGAAGAGAAGGAAGCCTGAGGAATGTAGCTGCAGTAAACAAAGCTATTACAATAAAGAGAAAGGTGTAA 1345
Query 2069 AAAAGCAAGAGAAATTAAAGAGCCATCTTCACCCATTCAAGGAGGCTGCTCAGGAAGTAGATAGCAAACTGCAA 2142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1346 AAAAGCAAGAGAAATTAAAGAGCCATCTTCACCCATTCAAGGAGGCTGCTCAGGAAGTAGATAGCAAACTGCAA 1419
Query 2143 CTTTTCAAGGAGAACAACCGTAGGAGGAAGAAGGAGAGGAAGGAGAAGAGACGGCAGAGGAAGGGGGAAGAGTG 2216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1420 CTTTTCAAGGAGAACAACCGTAGGAGGAAGAAGGAGAGGAAGGAGAAGAGACGGCAGAGGAAGGGGGAAGAGTG 1493
Query 2217 CAGCCTGCCTGGCCTCACTTGCTTCACGCATGACAACAACCACTGGCAGACAGCCCCGTTCTGGAACCTGGGAT 2290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 CAGCCTGCCTGGCCTCACTTGCTTCACGCATGACAACAACCACTGGCAGACAGCCCCGTTCTGGAACCTGGGAT 1567
Query 2291 CTTTCTGTGCTTGCACGAGTTCTAACAATAACACCTACTGGTGTTTGCGTACAGTTAATGAGACGCATAATTTT 2364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1568 CTTTCTGTGCTTGCACGAGTTCTAACAATAACACCTACTGGTGTTTGCGTACAGTTAATGAGACGCATAATTTT 1641
Query 2365 CTTTTCTGTGAGTTTGCTACTGGCTTTTTGGAGTATTTTGATATGAATACAGATCCTTATCAGCTCACAAATAC 2438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1642 CTTTTCTGTGAGTTTGCTACTGGCTTTTTGGAGTATTTTGATATGAATACAGATCCTTATCAGCTCACAAATAC 1715
Query 2439 AGTGCACACGGTAGAACGAGGCATTTTGAATCAGCTACACGTACAACTAATGGAGCTCAGAAGCTGTCAAGGAT 2512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1716 AGTGCACACGGTAGAACGAGGCATTTTGAATCAGCTACACGTACAACTAATGGAGCTCAGAAGCTGTCAAGGAT 1789
Query 2513 ATAAGCAGTGCAACCCAAGACCTAAGAATCTTGATGTTGGAAATAAAGATGGAGGAAGCTATGACCTACACAGA 2586
|||||||||||||||||||||||||||||||||||||| ||
Sbjct 1790 ATAAGCAGTGCAACCCAAGACCTAAGAATCTTGATGTT----------------------------------GA 1829
Query 2587 GGACAGTTATGGGATGGATGGGAAGGTTAAGC------------------------------------------ 2618
||||||||||||||||||||||||||||||.|
Sbjct 1830 GGACAGTTATGGGATGGATGGGAAGGTTAATCAGCCCCGTCTCACTGCAGACATCAACTGGCAAGGCCTAGAGG 1903
Query 2619 -------------------------------------------------------------------------- 2618
Sbjct 1904 AGCTACACAGTGTGAATGAAAACATCTATGAGTACAGACAAAACTACAGACTTAGTCTGGTGGACTGGACTAAT 1977
Query 2619 -------------------------------------------------------------------------- 2618
Sbjct 1978 TACTTGAAGGATTTAGATAGAGTATTTGCACTGCTGAAGAGTCACTATGAGCAAAATAAAACAAATAAGACTCA 2051
Query 2619 -------------------------------------------------------------------------- 2618
Sbjct 2052 AACTGCTCAAAGTGACGGGTTCTTGGTTGTCTCTGCTGAGCACGCTGTGTCAATGGAGATGGCCTCTGCTGACT 2125
Query 2619 -------------------------------------------------------------------------- 2618
Sbjct 2126 CAGATGAAGACCCAAGGCATAAGGTTGGGAAAACACCTCATTTGACCTTGCCAGCTGACCTTCAAACCCTGCAT 2199
Query 2619 -------------------------------------------------------------------------- 2618
Sbjct 2200 TTGAACCGACCAACATTAAGTCCAGAGAGTAAACTTGAATGGAATAACGACATTCCAGAAGTTAATCATTTGAA 2273
Query 2619 -------------------------------------------------------------------------- 2618
Sbjct 2274 TTCTGAACACTGGAGAAAAACCGAAAAATGGACGGGGCATGAAGAGACTAATCATCTGGAAACCGATTTCAGTG 2347
Query 2619 -------------------------------------------------------------------------- 2618
Sbjct 2348 GCGATGGCATGACAGAGCTAGAGCTCGGGCCCAGCCCCAGGCTGCAGCCCATTCGCAGGCACCCGAAAGAACTT 2421
Query 2619 -------------------------------------------------------------------------- 2618
Sbjct 2422 CCCCAGTATGGTGGTCCTGGAAAGGACATTTTTGAAGATCAACTATATCTTCCTGTGCATTCCGATGGAATTTC 2495
Query 2619 -------------------------------------------------------------------------- 2618
Sbjct 2496 AGTTCATCAGATGTTCACCATGGCCACCGCAGAACACCGAAGTAATTCCAGCATAGCGGGGAAGATGTTGACCA 2569
Query 2619 -------------------------------------------------------------------------- 2618
Sbjct 2570 AGGTGGAGAAGAATCACGAAAAGGAGAAGTCACAGCACCTAGAAGGCAGCGCCTCCTCTTCACTCTCCTCTGAT 2643
