Nucleotide Global Alignment
Description
- Query:
- TRCN0000489907
- Subject:
- XR_921764.3
- Aligned Length:
- 3871
- Identities:
- 1832
- Gaps:
- 1943
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CGGTGGTTTAAAGATGGCGGCGGCGGTGGCGGCGGCGGCGGCGGCGGCGTTGGGGGCGCGGAGCCGCGACAGGA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGAGGGAAAAGCAGAATCTGTGAGTCGCCTGGAGGCAGCGCGGCGGCTGCCGTGAGGAGGCCGGGTGCGGAGCC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCCGGTGGCCCAGCCACTCAGGGCCAGGGCCTGGGCTGGGAGGGAGAGACCGGAGCAGCGCCAGGAGCCCGAGG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCGGAGCCGAGGAGGAATGTGACCAGGGGTCGGCGGGGGCGCGGGAGTACGCGAGAGCAGGGATGGGGCAGCAG 296
Query 1 ATGGTCC---TTGGGACAGTTCTCC----TTCCA----CCTAA-----TAGTTAT----GGCAG-AGATCAG-- 51
.|||.|| |.|||..|| |||| .|||| |||.| ..|..|| ||||| ||..|||
Sbjct 297 GTGGGCCGCGTCGGGGAAG--CTCCGGGGCTCCAGCAGCCTCAGCCCCGCGGGATCCGGGGCAGCAGTGCAGCC 368
Query 52 -GACACTTCACTTTGCTGCCTGTG------------------CACTGA----GGCCTCAGAATCTGCTCTACCC 102
|.|.||.| .||.||..|.| |||.|| |||.|||..||||.| ||||
Sbjct 369 AGGCCCTCC----GGCCGCAGGCGGGACCCGGCGGGGCGCACCACAGAGACCGGCTTCAATATCTTC---ACCC 435
Query 103 GACTTAACA-GATCACTTTGCCAGCTGTGTGGAGGATGGATTTGAGGGAGACAAGACTGGAGGCAGTAGTCCAG 175
|.|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 436 -----AGCATGATCACTTTGCCAGCTGTGTGGAGGATGGATTTGAGGGAGACAAGACTGGAGGCAGTAGTCCAG 504
Query 176 AAGCTTTGCATCGTCCCTATGGTTGTGATGTTGAACCCCAGGCACTAAATGAGGCTATCAGGTGGAGCTCCAAG 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 505 AAGCTTTGCATCGTCCCTATGGTTGTGATGTTGAACCCCAGGCACTAAATGAGGCTATCAGGTGGAGCTCCAAG 578
Query 250 GAGAACTTGCTCGGAGCCACTGAGAGTGACCCTAATCTCTTCGTTGCACTTTATGATTTTGTAGCAAGTGGTGA 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 579 GAGAACTTGCTCGGAGCCACTGAGAGTGACCCTAATCTCTTCGTTGCACTTTATGATTTTGTAGCAAGTGGTGA 652
Query 324 TAACACACTCAGCATCACTAAAGGTGAAAAGCTACGAGTCCTTGGTTACAACCAGAATGGTGAGTGGAGTGAAG 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 TAACACACTCAGCATCACTAAAGGTGAAAAGCTACGAGTCCTTGGTTACAACCAGAATGGTGAGTGGAGTGAAG 726
Query 398 TTCGCTCTAAGAATGGGCAGGGCTGGGTGCCAAGCAACTACATCACCCCAGTGAACAGCCTGGAAAAACACTCC 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 727 TTCGCTCTAAGAATGGGCAGGGCTGGGTGCCAAGCAACTACATCACCCCAGTGAACAGCCTGGAAAAACACTCC 800
Query 472 TGGTACCATGGACCTGTGTCACGCAGTGCAGCTGAGTATCTGCTCAGCAGTCTAATCAATGGCAGCTTCCTGGT 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 801 TGGTACCATGGACCTGTGTCACGCAGTGCAGCTGAGTATCTGCTCAGCAGTCTAATCAATGGCAGCTTCCTGGT 874
Query 546 GCGAGAAAGTGAGAGTAGCCCTGGGCAGCTGTCCATCTCGCTCAGGTACGAGGGACGTGTATATCACTACAGGA 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||
Sbjct 875 GCGAGAAAGTGAGAGTAGCCCTGGGCAGCTGTCCATCTCGCTCAGGTACGAGGGACGTGTGTATCACTACAGGA 948
Query 620 TCAATACCACTGCAGATGGCAAGGTGTATGTGACTGCTGAGAGCCGCTTCAGCACCTTGGCAGAGCTTGTACAC 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 TCAATACCACTGCAGATGGCAAGGTGTATGTGACTGCTGAGAGCCGCTTCAGCACCTTGGCAGAGCTTGTACAC 1022
Query 694 CATCACTCCACAGTGGCTGATGGGCTGGTGACAACATTACACTACCCAGCACCCAAGTGTAATAAGCCTACAGT 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 CATCACTCCACAGTGGCTGATGGGCTGGTGACAACATTACACTACCCAGCACCCAAGTGTAATAAGCCTACAGT 1096
Query 768 CTATGGTGTGTCCCCCATCCACGACAAATGGGAAATGGAGCGAACAGATATTACCATGAAGCACAAACTTGGGG 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1097 CTATGGTGTGTCCCCCATCCACGACAAATGGGAAATGGAGCGAACAGATATTACCATGAAGCACAAACTTGGGG 1170
Query 842 GCGGTCAGTATGGAGAGGTTTACGTTGGCGTCTGGAAGAAATACAGCCTTACAGTTGCTGTGAAAACATTGAAG 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1171 GCGGTCAGTATGGAGAGGTTTACGTTGGCGTCTGGAAGAAATACAGCCTTACAGTTGCTGTGAAAACATTGAAG 1244
Query 916 GAAGATACCATGGAGGTAGAAGAATTCCTGAAAGAAGCTGCAGTAATGAAGGAAATCAAGCATCCTAATCTGGT 989
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1245 GAAGATACCATGGAGGTAGAAGAATTCCTGAAAGAAGCTGCAGTAATGAAGGAAATCAAGCATCCTAATCTGGT 1318
Query 990 ACAACTTTTAGGTGTGTGTACTTTGGAGCCACCATTTTACATTGTGACTGAATACATGCCATACGGGAATTTGC 1063
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 ACAACTTTTAGGTGTGTGTACTTTGGAGCCACCATTTTACATTGTGACTGAATACATGCCATACGGGAATTTGC 1392
Query 1064 TGGATTACCTCCGAGAATGCAACCGAGAAGAGGTGACTGCAGTTGTGCTGCTCTACATGGCCACTCAGATTTCT 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1393 TGGATTACCTCCGAGAATGCAACCGAGAAGAGGTGACTGCAGTTGTGCTGCTCTACATGGCCACTCAGATTTCT 1466
Query 1138 TCTGCAATGGAGTACTTAGAGAAGAAGAATTTCATCCATAGAGATCTTGCAGCTCGTAACTGCCTAGTGGGAGA 1211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1467 TCTGCAATGGAGTACTTAGAGAAGAAGAATTTCATCCATAGAGATCTTGCAGCTCGTAACTGCCTAGTGGGAGA 1540
Query 1212 AAACCATGTGGTAAAAGTGGCTGACTTTGGCTTAAGTAGATTGATGACTGGAGACACTTATACTGCTCATGCTG 1285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1541 AAACCATGTGGTAAAAGTGGCTGACTTTGGCTTAAGTAGATTGATGACTGGAGACACTTATACTGCTCATGCTG 1614
Query 1286 GAGCCAAATTTCCTATTAAGTGGACAGCACCAGAGAGTCTTGCCTACAATACCTTCTCAATTAAATCTGACGTC 1359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1615 GAGCCAAATTTCCTATTAAGTGGACAGCACCAGAGAGTCTTGCCTACAATACCTTCTCAATTAAATCTGACGTC 1688
Query 1360 TGGGCTTTTGGGGTATTGTTGTGGGAAATTGCTACCTATGGAATGTCACCATATCCAGGTATTGACCTGTCTCA 1433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1689 TGGGCTTTTGGGGTATTGTTGTGGGAAATTGCTACCTATGGAATGTCACCATATCCAGGTATTGACCTGTCTCA 1762
Query 1434 GGTCTATGACCTACTAGAAAAAGGATATCGAATGGAACAGCCTGAGGGATGCCCCCCTAAGGTTTATGAACTTA 1507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1763 GGTCTATGACCTACTAGAAAAAGGATATCGAATGGAACAGCCTGAGGGATGCCCCCCTAAGGTTTATGAACTTA 1836
Query 1508 TGAGAGCATGCTGGAAGTGGAGCCCTGCCGATAGGCCCTCTTTTGCTGAAACACACCAAGCTTTTGAAACCATG 1581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1837 TGAGAGCATGCTGGAAGTGGAGCCCTGCCGATAGGCCCTCTTTTGCTGAAACACACCAAGCTTTTGAAACCATG 1910
Query 1582 TTCCATGACTCTAGCATTTCTGAAGAGGTAGCTGAGGAGCTTGGGAGAGCCGCCTCCTCGTCATCTGTTGTTCC 1655
|||||||||||.||||||||||||| || ||||
Sbjct 1911 TTCCATGACTCCAGCATTTCTGAAG---------------TT-----------CTCC----------------- 1941
Query 1656 ATACCTGCCCCGGCTACCTATACTTCCTTCCAAGACTCGGACACTGAAGAAACAGGTGGAGAACAAGGAGAACA 1729
|||.|..|.|||| ||.||| |||.|.||||..|.||||
Sbjct 1942 --------------------TACATTGTGCCAA---TCAGAC-------------GTGCATAACATTGTGAAC- 1978
Query 1730 TTGAAGGGGCACAAGATGCCACAGAAAATTCTGCTTCCAGTTTAGCACCAGGGTTCATCAGAGGTGCACAGGCC 1803
||.|||| ||||||..|...||.|.| |||||.| |..||||
Sbjct 1979 ---------CAAAAGA---CACAGAGCAGGATGATGC-----TAGCAAC-GTATTCA----------------- 2017
Query 1804 TCTAGTGGATCCCCAGCACTGCCTCGAAAGCAAAGAGACAAGTCACCCAGCAGCCTCTTGGAAGATGCCAAAGA 1877
|||| |.|.||| .|||| |||| ||.||| |
Sbjct 2018 --TAGT--AACTCCA-AACTG----GAAA---------------------CAACCT-----------------A 2044
Query 1878 GACATGCTTCACCAGGGATAGGAAGGGGGGCT-------TCTTCAGCTCCTT--CATGAAGAAGAGAAATGCTC 1942
.||||.|.|||..||| ||.|..||.||.| |.|||| |.|.|| ||||
Sbjct 2045 AACATCCATCAAGAGG---AGAACAGGTGGATTGTGGTATATTCA-CACGTTGGCATG---------------- 2098
Query 1943 CTACACCCCCCAAACGCAGCAGCTCCTTCCGAGAAATGGAGAATCAGCCCCATAAGAAATACGAACTCACGGGT 2016
|||||| ||.||| ||||| ||||
Sbjct 2099 CTACAC-------------------------AGCAAT-GAGAA----CCCC----------------------- 2119
Query 2017 AACTTCTCATCTGTTGCTTCTCTACAGCATGCTGATGGGTTCTCTTTCACTCCTGCCCAGCAAGAGG-CGAATC 2089
||| || |||||.| |||| |.|| ||||||
Sbjct 2120 --------------TGC-------CA-CATGCAG-----------------------CAGC--GTGGACGAATC 2146
Query 2090 TGGTGCCACCCAAGTGCTATGGGGGGAGCTTTGCACAGAGGAACCTCTGTAATGACGACGGTGGTGGGGGTGGG 2163
| ||.||..||.||..|||.|| |.|||
Sbjct 2147 T------ACACACATGATACTGGGCGA-----------AAGAA------------------------------- 2172
Query 2164 GGCAGTGGCACTGCTGGGGGTGGGTGGTCTGGCATCACAGGCTTCTTTACACCACGCTTAATCAAAAAG---AC 2234
|.||| ||| |||.|| |.
Sbjct 2173 GCCAG-------------------------------ACA------------------------AAAGAGTACAT 2191
Query 2235 ACTGGGCTTACGA----GCAGGTAAACCCACAGCCAGTGATGACACTT-------CCAAGCCTTTTCCAAGGTC 2297
||| |||.|| |.|||| ||| |||.|| .||| || ||||..|| |||
Sbjct 2192 ACT----TTATGATTCCGTAGGT--------AGC---TGAGGA-GCTTGGGAGAGCC--GCCTCCTC----GTC 2243
Query 2298 AAACTCTACATCTTCCATGTCCT--CAGGGCTTCCAGAGCAGGATAGGATGGCAATGACCCTTCCCAGGAACTG 2369
| ||| ..|.|||||| .||| |..||||.|| .||| |||||
Sbjct 2244 A---TCT-GTTGTTCCAT-ACCTGCCCCGGCTACC-------TATA--------------CTTCC--------- 2282
Query 2370 CCAGAGGTCCAA-ACTCCAGCTGGAAAGGACAGTGTCCACCTCTTCTCAGCCAGAAGAGAATGTGGACAGGGCC 2442
.||||| |||| |||||
Sbjct 2283 ------TTCCAAGACTC----------GGACA------------------------------------------ 2298
Query 2443 AATGACATGCTTCCAAAAAAATCAGAGGAAAGTGCTGCTCCAAGCAGGGAGAGACCAAAAGCCAAGTTATTGCC 2516
Sbjct 2299 -------------------------------------------------------------------------- 2298
Query 2517 CAGAGGAGCCACAGCTCTTCCTCTCAGAACACCCTCTGGGGATCTAGCCATTACAGAGAAGGACCCTCCAGGGG 2590
Sbjct 2299 -------------------------------------------------------------------------- 2298
Query 2591 TGGGAGTGGCTGGAGTGGCAGCTGCCCCCAAGGGTAAAGAGAAGAATGGTGGGGCACGACTTGGGATGGCTGGA 2664
Sbjct 2299 -------------------------------------------------------------------------- 2298
Query 2665 GTTCCAGAGGATGGAGAGCAGCCGGGCTGGCCTTCTCCAGCCAAGGCTGCCCCCGTCCTCCCAACCACTCACAA 2738
Sbjct 2299 -------------------------------------------------------------------------- 2298
Query 2739 CCACAAAGTGCCAGTCCTTATCTCACCCACTCTGAAACACACTCCAGCTGACGTGCAGCTCATTGGCACAGACT 2812
Sbjct 2299 -------------------------------------------------------------------------- 2298
Query 2813 CTCAGGGGAATAAATTCAAGCTCTTATCTGAGCATCAGGTCACATCCTCTGGAGACAAGGACCGACCCCGACGG 2886
Sbjct 2299 -------------------------------------------------------------------------- 2298
Query 2887 GTAAAACCAAAGTGTGCCCCACCCCCACCACCAGTGATGAGACTACTGCAGCATCCGTCCATCTGCTCAGACCC 2960
Sbjct 2299 -------------------------------------------------------------------------- 2298
Query 2961 TACAGAAGAGCCAACTGCCCTAACTGCAGGACAGTCCACATCAGAAACACAGGAAGGAGGAAAGAAGGCAGCTC 3034
Sbjct 2299 -------------------------------------------------------------------------- 2298
Query 3035 TGGGCGCAGTGCCCATCAGTGGGAAAGCTGGGAGGCCAGTGATGCCTCCACCTCAAGTGCCTCTGCCCACATCT 3108
Sbjct 2299 -------------------------------------------------------------------------- 2298
Query 3109 TCCATCTCGCCAGCCAAAATGGCCAATGGCACAGCAGGTACTAAAGTGGCTCTGAGAAAAACCAAACAGGCCGC 3182
Sbjct 2299 -------------------------------------------------------------------------- 2298
Query 3183 TGAGAAAATCTCAGCAGACAAAATCAGCAAAGAGGCCCTGCTGGAATGTGCTGACCTACTGTCCAGTGCACTCA 3256
Sbjct 2299 -------------------------------------------------------------------------- 2298
Query 3257 CGGAACCTGTGCCCAACAGCCAGCTGGTAGACACTGGACACCAGCTGCTTGACTACTGCTCAGGCTATGTGGAC 3330
Sbjct 2299 -------------------------------------------------------------------------- 2298
Query 3331 TGCATCCCTCAAACTCGCAACAAATTTGCCTTCCGAGAGGCTGTGAGCAAACTGGAACTCAGCCTGCAGGAGCT 3404
Sbjct 2299 -------------------------------------------------------------------------- 2298
Query 3405 ACAGGTTTCTTCAGCAGCTGCTGGTGTGCCCGGGACAAACCCTGTCCTTAATAACTTATTGTCATGTGTACAGG 3478
Sbjct 2299 -------------------------------------------------------------------------- 2298
Query 3479 AAATCAGTGATGTGGTGCAGAGG 3501
Sbjct 2299 ----------------------- 2298
