Nucleotide Global Alignment

Description

Query:
TRCN0000491429
Subject:
XM_011248709.2
Aligned Length:
1443
Identities:
1212
Gaps:
108

Alignment

Query    1  ATGCGGCATTCCAAAAGAACTCACTGTCCTGATTGGGATAGCAGAGAAAGCTGGGGACATGAAAGCTATCGTGG  74
            ||| .||||.||              ||.||                |||||                |||   
Sbjct    1  ATG-TGCATCCC--------------TCTTG----------------AAGCT----------------TCG---  24

Query   75  AAGTCACAAGCGGAAGAGGAGATCTCATAGTAGCACACAAGAGAACAGGCATTGTAAACCACATCACCAGTTTA  148
                |||               |||    ||.|     |||||.|||            |.|||| |||     
Sbjct   25  ----CAC---------------TCT----GTTG-----AAGAGGACA------------CTCATC-CCA-----  52

Query  149  AAGAATCTGATTGTCATTATTTAGAAGCAAGGTCCTTGAATGAGCGAGATTATCGGGACCGGAGATACGTTGAC  222
                        ||||.||||||||||||||.|.||||||||||.|||||||||||||||||||||||.||||.
Sbjct   53  ------------GTCACTATTTAGAAGCAAGATGCTTGAATGAGAGAGATTATCGGGACCGGAGATACATTGAT  114

Query  223  GAATACAGGAATGACTACTGTGAAGGATATGTTCCTAGACATTATCACAGAGACATTGAAAGCGGGTATCGAAT  296
            ||||||||.|||||||||||.||||||||||||||.||||||||.||.||||||.||||||||...||.||.||
Sbjct  115  GAATACAGAAATGACTACTGCGAAGGATATGTTCCAAGACATTACCATAGAGACGTTGAAAGCACTTACCGGAT  188

Query  297  CCACTGCAGTAAATCTTCAGTCCGCAGCAGGAGAAGCAGTCCTAAAAGGAAGCGCAATAGACACTGTTCAAGTC  370
            |||.|||||||||||.||||||.|.||||||||||||||.|||||.||.|||||.|||||||.||||.||||||
Sbjct  189  CCATTGCAGTAAATCCTCAGTCAGGAGCAGGAGAAGCAGCCCTAAGAGAAAGCGTAATAGACCCTGTGCAAGTC  262

Query  371  ATCAGTCACGTTCGAAGAGCCACCGAAGGAAAAGATCCAGGAGTATAGAGGATGATGAGGAGGGTCACCTGATC  444
            |||||||.|.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  263  ATCAGTCGCATTCGAAGAGCCACCGAAGGAAAAGATCCAGGAGTATAGAGGATGATGAGGAGGGTCACCTGATC  336

Query  445  TGTCAAAGTGGAGACGTTCTAAGAGCAAGATATGAAATCGTGGACACTTTGGGTGAAGGAGCCTTTGGCAAAGT  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||
Sbjct  337  TGTCAAAGTGGAGACGTTCTAAGAGCAAGATATGAAATCGTGGACACTTTAGGTGAAGGAGCCTTTGGCAAAGT  410

Query  519  TGTAGAGTGCATTGATCATGGCATGGATGGCATGCATGTAGCAGTGAAAATCGTAAAAAATGTAGGCCGTTACC  592
            ||||||||||||||||||.||||||||||||.|.|||||||||||||||||.||||||||||||||||||||||
Sbjct  411  TGTAGAGTGCATTGATCACGGCATGGATGGCTTACATGTAGCAGTGAAAATTGTAAAAAATGTAGGCCGTTACC  484

Query  593  GTGAAGCAGCTCGTTCAGAAATCCAAGTATTAGAGCACTTAAATAGTACTGATCCCAATAGTGTCTTCCGATGT  666
            |.||.|||||||||||.||||||||||||||.||||||||.||.||.|||||.|||||.||||||||||||||.
Sbjct  485  GGGAGGCAGCTCGTTCTGAAATCCAAGTATTGGAGCACTTGAACAGCACTGACCCCAACAGTGTCTTCCGATGC  558

Query  667  GTCCAGATGCTAGAATGGTTTGATCATCATGGTCATGTTTGTATTGTGTTTGAACTACTGGGACTTAGTACTTA  740
            ||||||||||||||.||||||||||||||||||||||||||||||||||||||.||.||||||||||||||.||
Sbjct  559  GTCCAGATGCTAGAGTGGTTTGATCATCATGGTCATGTTTGTATTGTGTTTGAGCTGCTGGGACTTAGTACCTA  632

Query  741  CGATTTCATTAAAGAAAACAGCTTTCTGCCATTTCAAATTGACCACATCAGGCAGATGGCGTATCAGATCTGCC  814
            .|||||.|||||||||||.||.||||||||||||||||||||.|||||||||||.|||||.|||||||||||||
Sbjct  633  TGATTTTATTAAAGAAAATAGTTTTCTGCCATTTCAAATTGATCACATCAGGCAAATGGCTTATCAGATCTGCC  706

Query  815  AGTCAATAAATTTTTTACATCATAATAAATTAACCCATACAGATCTGAAGCCTGAAAATATTTTGTTTGTGAAG  888
            ||||.|||||||||||||||||||||||||||||.||.||.||.||.||.||||||||||||||.|||||||||
Sbjct  707  AGTCTATAAATTTTTTACATCATAATAAATTAACACACACGGACCTAAAACCTGAAAATATTTTATTTGTGAAG  780

Query  889  TCTGACTATGTAGTCAAATATAATTCTAAAATGAAACGTGATGAACGCACACTGAAAAACACAGATATCAAAGT  962
            ||||||||||||||||||||.|||||||||||||||||.|||||.||||||.||||||||||||||||||||||
Sbjct  781  TCTGACTATGTAGTCAAATACAATTCTAAAATGAAACGAGATGAGCGCACATTGAAAAACACAGATATCAAAGT  854

Query  963  TGTTGACTTTGGAAGTGCAACGTATGATGATGAACATCACAGTACTTTGGTGTCTACCCGGCACTACAGAGCTC  1036
            ||||||.||||||||||||||.|||||.||.||||||||.||||||||||||||.||..||||||||||.||||
Sbjct  855  TGTTGATTTTGGAAGTGCAACATATGACGACGAACATCATAGTACTTTGGTGTCCACAAGGCACTACAGGGCTC  928

Query 1037  CCGAGGTCATTTTGGCTTTAGGTTGGTCTCAGCCTTGTGATGTTTGGAGCATAGGTTGCATTCTTATTGAATAT  1110
            |.|||||||||||||||.|||||||||||||||||||||||||||||||||||||.||||||||||||||.||.
Sbjct  929  CAGAGGTCATTTTGGCTCTAGGTTGGTCTCAGCCTTGTGATGTTTGGAGCATAGGCTGCATTCTTATTGAGTAC  1002

Query 1111  TACCTTGGTTTCACAGTCTTTCAGACTCATGATAGTAAAGAGCACCTGGCAATGATGGAACGAATATTAGGACC  1184
            ||||||||.|||||||||||||||||.||.|||||||||||||||||||||||||||||.||.||.||||||||
Sbjct 1003  TACCTTGGGTTCACAGTCTTTCAGACCCACGATAGTAAAGAGCACCTGGCAATGATGGAGCGGATCTTAGGACC  1076

Query 1185  CATACCACAACACATGATTCAGAAAACAAGAAAACGCAAGTATTTTCACCATAACCAGCTAGATTGGGATGAAC  1258
            |||.|||..|||.|||||.|||||.|||||.||||||||||||||.|||||||||||||||||||||||.||.|
Sbjct 1077  CATCCCAGCACATATGATCCAGAAGACAAGGAAACGCAAGTATTTCCACCATAACCAGCTAGATTGGGACGAGC  1150

Query 1259  ACAGTTCTGCTGGTAGATATGTTAGGAGACGCTGCAAACCGTTGAAGGAATTTATGCTTTGTCATGATGAAGAA  1332
            |.|||||.|||||.|||||||||||||||||||||||.|||||.||||||||||||||.||||||||.|||||.
Sbjct 1151  ATAGTTCAGCTGGGAGATATGTTAGGAGACGCTGCAAGCCGTTAAAGGAATTTATGCTGTGTCATGACGAAGAG  1224

Query 1333  CATGAGAAACTGTTTGACCTGGTTCGAAGAATGTTAGAATATGATCCAACTCAAAGAATTACCTTGGATGAAGC  1406
            ||||||||.||||||||||||||||||||||||||.||.|||||.|||.|...|||.||.||||||||||||||
Sbjct 1225  CATGAGAAGCTGTTTGACCTGGTTCGAAGAATGTTGGAGTATGACCCAGCGAGAAGGATCACCTTGGATGAAGC  1298

Query 1407  ATTGCAGCATCCTTTCTTTGACTTATTAAAAAAGAAA  1443
            |||||||||.||||||||||||||||||||||.||||
Sbjct 1299  ATTGCAGCACCCTTTCTTTGACTTATTAAAAAGGAAA  1335

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.