Nucleotide Global Alignment

Description

Query:
TRCN0000491429
Subject:
XM_017314243.1
Aligned Length:
1588
Identities:
1253
Gaps:
203

Alignment

Query    1  ATGCGGCATTCCAAAAGAACTCACTGTCCTGATTGGGATAGCAGAGAAAGCTGGGGACATGAAAGCTATCGTGG  74
                                                                      ||||||||||..||||
Sbjct    1  ----------------------------------------------------------ATGAAAGCTACAGTGG  16

Query   75  AAGTCACAAGCGGAAGAGGAGATCTCATAGTAGCACACAAGAGAACAGGCATTGTAAACCACATCACCAGTTTA  148
            |||||||||.||.|||||.||.|||||.||.||.||.||.|||||||||||.||||||||||||||.|||||||
Sbjct   17  AAGTCACAAACGCAAGAGAAGGTCTCACAGCAGTACTCAGGAGAACAGGCACTGTAAACCACATCATCAGTTTA  90

Query  149  AAGAATCTGATT--------------------------------------------------------------  160
            ||||.||.||||                                                              
Sbjct   91  AAGACTCGGATTGATGTTCCATTGGGGCTGTTTACCAGATTGCTTTCTAAATTAGCCAGCTGGGGTTACTTTAA  164

Query  161  --------------------------------------------------------------------------  160
                                                                                      
Sbjct  165  AAAACAGGGTCTTTGTGTACAAATCTTTGCCTGTGGCTATTTCCTGAGAGTAGATTCTAAGAAGAGGCATTTTC  238

Query  161  ---------GTCATTATTTAGAAGCAAGGTCCTTGAATGAGCGAGATTATCGGGACCGGAGATACGTTGACGAA  225
                     ||||.||||||||||||||.|.||||||||||.|||||||||||||||||||||||.||||.|||
Sbjct  239  AAGTTAAAGGTCACTATTTAGAAGCAAGATGCTTGAATGAGAGAGATTATCGGGACCGGAGATACATTGATGAA  312

Query  226  TACAGGAATGACTACTGTGAAGGATATGTTCCTAGACATTATCACAGAGACATTGAAAGCGGGTATCGAATCCA  299
            |||||.|||||||||||.||||||||||||||.||||||||.||.||||||.||||||||...||.||.|||||
Sbjct  313  TACAGAAATGACTACTGCGAAGGATATGTTCCAAGACATTACCATAGAGACGTTGAAAGCACTTACCGGATCCA  386

Query  300  CTGCAGTAAATCTTCAGTCCGCAGCAGGAGAAGCAGTCCTAAAAGGAAGCGCAATAGACACTGTTCAAGTCATC  373
            .|||||||||||.||||||.|.||||||||||||||.|||||.||.|||||.|||||||.||||.|||||||||
Sbjct  387  TTGCAGTAAATCCTCAGTCAGGAGCAGGAGAAGCAGCCCTAAGAGAAAGCGTAATAGACCCTGTGCAAGTCATC  460

Query  374  AGTCACGTTCGAAGAGCCACCGAAGGAAAAGATCCAGGAGTATAGAGGATGATGAGGAGGGTCACCTGATCTGT  447
            ||||.|.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  461  AGTCGCATTCGAAGAGCCACCGAAGGAAAAGATCCAGGAGTATAGAGGATGATGAGGAGGGTCACCTGATCTGT  534

Query  448  CAAAGTGGAGACGTTCTAAGAGCAAGATATGAAATCGTGGACACTTTGGGTGAAGGAGCCTTTGGCAAAGTTGT  521
            |||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||
Sbjct  535  CAAAGTGGAGACGTTCTAAGAGCAAGATATGAAATCGTGGACACTTTAGGTGAAGGAGCCTTTGGCAAAGTTGT  608

Query  522  AGAGTGCATTGATCATGGCATGGATGGCATGCATGTAGCAGTGAAAATCGTAAAAAATGTAGGCCGTTACCGTG  595
            |||||||||||||||.||||||||||||.|.|||||||||||||||||.|||||||||||||||||||||||.|
Sbjct  609  AGAGTGCATTGATCACGGCATGGATGGCTTACATGTAGCAGTGAAAATTGTAAAAAATGTAGGCCGTTACCGGG  682

Query  596  AAGCAGCTCGTTCAGAAATCCAAGTATTAGAGCACTTAAATAGTACTGATCCCAATAGTGTCTTCCGATGTGTC  669
            |.|||||||||||.||||||||||||||.||||||||.||.||.|||||.|||||.||||||||||||||.|||
Sbjct  683  AGGCAGCTCGTTCTGAAATCCAAGTATTGGAGCACTTGAACAGCACTGACCCCAACAGTGTCTTCCGATGCGTC  756

Query  670  CAGATGCTAGAATGGTTTGATCATCATGGTCATGTTTGTATTGTGTTTGAACTACTGGGACTTAGTACTTACGA  743
            |||||||||||.||||||||||||||||||||||||||||||||||||||.||.||||||||||||||.||.||
Sbjct  757  CAGATGCTAGAGTGGTTTGATCATCATGGTCATGTTTGTATTGTGTTTGAGCTGCTGGGACTTAGTACCTATGA  830

Query  744  TTTCATTAAAGAAAACAGCTTTCTGCCATTTCAAATTGACCACATCAGGCAGATGGCGTATCAGATCTGCCAGT  817
            |||.|||||||||||.||.||||||||||||||||||||.|||||||||||.|||||.||||||||||||||||
Sbjct  831  TTTTATTAAAGAAAATAGTTTTCTGCCATTTCAAATTGATCACATCAGGCAAATGGCTTATCAGATCTGCCAGT  904

Query  818  CAATAAATTTTTTACATCATAATAAATTAACCCATACAGATCTGAAGCCTGAAAATATTTTGTTTGTGAAGTCT  891
            |.|||||||||||||||||||||||||||||.||.||.||.||.||.||||||||||||||.||||||||||||
Sbjct  905  CTATAAATTTTTTACATCATAATAAATTAACACACACGGACCTAAAACCTGAAAATATTTTATTTGTGAAGTCT  978

Query  892  GACTATGTAGTCAAATATAATTCTAAAATGAAACGTGATGAACGCACACTGAAAAACACAGATATCAAAGTTGT  965
            |||||||||||||||||.|||||||||||||||||.|||||.||||||.|||||||||||||||||||||||||
Sbjct  979  GACTATGTAGTCAAATACAATTCTAAAATGAAACGAGATGAGCGCACATTGAAAAACACAGATATCAAAGTTGT  1052

Query  966  TGACTTTGGAAGTGCAACGTATGATGATGAACATCACAGTACTTTGGTGTCTACCCGGCACTACAGAGCTCCCG  1039
            |||.||||||||||||||.|||||.||.||||||||.||||||||||||||.||..||||||||||.|||||.|
Sbjct 1053  TGATTTTGGAAGTGCAACATATGACGACGAACATCATAGTACTTTGGTGTCCACAAGGCACTACAGGGCTCCAG  1126

Query 1040  AGGTCATTTTGGCTTTAGGTTGGTCTCAGCCTTGTGATGTTTGGAGCATAGGTTGCATTCTTATTGAATATTAC  1113
            ||||||||||||||.|||||||||||||||||||||||||||||||||||||.||||||||||||||.||.|||
Sbjct 1127  AGGTCATTTTGGCTCTAGGTTGGTCTCAGCCTTGTGATGTTTGGAGCATAGGCTGCATTCTTATTGAGTACTAC  1200

Query 1114  CTTGGTTTCACAGTCTTTCAGACTCATGATAGTAAAGAGCACCTGGCAATGATGGAACGAATATTAGGACCCAT  1187
            |||||.|||||||||||||||||.||.|||||||||||||||||||||||||||||.||.||.|||||||||||
Sbjct 1201  CTTGGGTTCACAGTCTTTCAGACCCACGATAGTAAAGAGCACCTGGCAATGATGGAGCGGATCTTAGGACCCAT  1274

Query 1188  ACCACAACACATGATTCAGAAAACAAGAAAACGCAAGTATTTTCACCATAACCAGCTAGATTGGGATGAACACA  1261
            .|||..|||.|||||.|||||.|||||.||||||||||||||.|||||||||||||||||||||||.||.||.|
Sbjct 1275  CCCAGCACATATGATCCAGAAGACAAGGAAACGCAAGTATTTCCACCATAACCAGCTAGATTGGGACGAGCATA  1348

Query 1262  GTTCTGCTGGTAGATATGTTAGGAGACGCTGCAAACCGTTGAAGGAATTTATGCTTTGTCATGATGAAGAACAT  1335
            ||||.|||||.|||||||||||||||||||||||.|||||.||||||||||||||.||||||||.|||||.|||
Sbjct 1349  GTTCAGCTGGGAGATATGTTAGGAGACGCTGCAAGCCGTTAAAGGAATTTATGCTGTGTCATGACGAAGAGCAT  1422

Query 1336  GAGAAACTGTTTGACCTGGTTCGAAGAATGTTAGAATATGATCCAACTCAAAGAATTACCTTGGATGAAGCATT  1409
            |||||.||||||||||||||||||||||||||.||.|||||.|||.|...|||.||.|||||||||||||||||
Sbjct 1423  GAGAAGCTGTTTGACCTGGTTCGAAGAATGTTGGAGTATGACCCAGCGAGAAGGATCACCTTGGATGAAGCATT  1496

Query 1410  GCAGCATCCTTTCTTTGACTTATTAAAAAAGAAA  1443
            ||||||.||||||||||||||||||||||.||||
Sbjct 1497  GCAGCACCCTTTCTTTGACTTATTAAAAAGGAAA  1530

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