Nucleotide Global Alignment

Description

• Query: TRCN0000491567
• Subject: XM_017022176.1
• Aligned Length: 1572
• Identities: 1094
• Gaps: 452

Alignment

Query    1  ATGGA------CACAAGTCCCCTGTGTTT--CTCCATTCTGTTGGTTTTATGCATCTT-------------TAT  53
            |||||      |||             ||  |||.|||       |..|||.|.||.|             |||
Sbjct    1  ATGGATTTGATCAC-------------TTACCTCAATT-------TAATATTCCTCCTCCTAAAACCACAGTAT  54

Query   54  -----CCA-------ATCA--AGTG-------CCCTT----GGAC------AAAGC--------CTGAAACCAG  88
                 |||       ||||  .|||       |.|||    .|||      |||||        |.||    ||
Sbjct   55  CATCCCCAGATTCTTATCACTGGTGTGACTACCTCTTCTGAAGACATGAGAAAAGCTCCAGTTTCAGA----AG  124

Query   89  AGCCATTTGGAAGAAGAGCTCAAGCTGTTGAAACAAACAAAACGCTGCATGAGATGAAGACCAGATTCCTGCTC  162
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  125  AGCCATTTGGAAGAAGAGCTCAAGCTGTTGAAACAAACAAAACGCTGCATGAGATGAAGACCAGATTCCTGCTC  198

Query  163  TTTGGAGAAACCAATCAGGGCTGTCAGATTCGAATCAATCATCCGGACACGTTACAGGAGTGCGGCTTCAACTC  236
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  199  TTTGGAGAAACCAATCAGGGCTGTCAGATTCGAATCAATCATCCGGACACGTTACAGGAGTGCGGCTTCAACTC  272

Query  237  CTCCCTGCCTCTGGTGATGATAATCCACGGGTGGTCGGTGGACGGCGTGCTAGAAAACTGGATCTGGCAGATGG  310
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  273  CTCCCTGCCTCTGGTGATGATAATCCACGGGTGGTCGGTGGACGGCGTGCTAGAAAACTGGATCTGGCAGATGG  346

Query  311  TGGCCGCGCTGAAGTCTCAGCCGGCCCAGCCAGTGAACGTGGGGCTGGTGGACTGGATCACCCTGGCCCACGAC  384
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  347  TGGCCGCGCTGAAGTCTCAGCCGGCCCAGCCAGTGAACGTGGGGCTGGTGGACTGGATCACCCTGGCCCACGAC  420

Query  385  CACTACACCATCGCCGTCCGCAACACCCGCCTTGTGGGCAAGGAGGTCGCGGCTCTTCTCCGGTGGCTGGAGGA  458
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  421  CACTACACCATCGCCGTCCGCAACACCCGCCTTGTGGGCAAGGAGGTCGCGGCTCTTCTCCGGTGGCTGGAGGA  494

Query  459  ATCTGTGCAACTCTCTCGAAGCCATGTTCACCTAATTGGGTACAGCCTGGGTGCACACGTGTCAGGATTTGCCG  532
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  495  ATCTGTGCAACTCTCTCGAAGCCATGTTCACCTAATTGGGTACAGCCTGGGTGCACACGTGTCAGGATTTGCCG  568

Query  533  GCAGTTCCATCGGTGGAACGCACAAGATTGGGAGAATCACAGGGCTGGATGCCGCGGGACCTTTGTTTGAGGGA  606
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  569  GCAGTTCCATCGGTGGAACGCACAAGATTGGGAGAATCACAGGGCTGGATGCCGCGGGACCTTTGTTTGAGGGA  642

Query  607  AGCGCCCCCAGCAATCGTCTTTCTCCAGATGATGCCAATTTTGTGGATGCCATTCATACCTTTACGCGGGAGCA  680
            ||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||
Sbjct  643  AGTGCCCCCAGCAATCGTCTTTCTCCAGATGATGCCAATTTTGTGGATGCCATTCATACCTTTACCCGGGAGCA  716

Query  681  CATGGGCCTGAGCGTGGGCATCAAACAGCCCATAGGACACTATGACTTCTATCCCAACGGGGGCTCCTTCCAGC  754
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  717  CATGGGCCTGAGCGTGGGCATCAAACAGCCCATAGGACACTATGACTTCTATCCCAACGGGGGCTCCTTCCAGC  790

Query  755  CTGGCTGCCACTTCCTAGAGCTCTACAGACATATTGCCCAGCACGGCTTCAATGCCATCACCCAGACCATAAAA  828
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  791  CTGGCTGCCACTTCCTAGAGCTCTACAGACATATTGCCCAGCACGGCTTCAATGCCATCACCCAGACCATAAAA  864

Query  829  TGCTCCCACGAGCGATCGGTGCACCTTTTCATCGACTCCTTGCTGCACGCCGGCACGCAGAGCATGGCCTACCC  902
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  865  TGCTCCCACGAGCGATCGGTGCACCTTTTCATCGACTCCTTGCTGCACGCCGGCACGCAGAGCATGGCCTACCC  938

Query  903  GTGTGGTGACATGAACAGCTTCAGCCAGGGCCTGTGCCTGAGCTGCAAGAAGGGCCGCTGCAACACGCTGGGCT  976
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  939  GTGTGGTGACATGAACAGCTTCAGCCAGGGCCTGTGCCTGAGCTGCAAGAAGGGCCGCTGCAACACGCTGGGCT  1012

Query  977  ACCACGTCCGCCAGGAGCCGCGGAGCAAGAGCAAGAGGCTCTTCCTCGTAACGCGAGCCCAGTCCCCCTTCAAA  1050
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013  ACCACGTCCGCCAGGAGCCGCGGAGCAAGAGCAAGAGGCTCTTCCTCGTAACGCGAGCCCAGTCCCCCTTCAAA  1086

Query 1051  GTTTATCATTACCAGTTAAAGA-TCCAGTTCATCAACCAAACTGAGACGCCAATACAAACAACTTTTACCATGT  1123
            |                   || ||||.||              ||     |||||     ||.|||||  || 
Sbjct 1087  G-------------------GATTCCAATT--------------AG-----AATAC-----ACGTTTAC--TG-  1114

Query 1124  CACTACTCGGAACAAAAGAGAAA-ATGCAGAA-AATTCCCATCACTCTGGGCAAAGGAATTGCTAGTAATAAAA  1195
                   |.||  |||.|.|||| .||||||| ||    |||           ||.|||..|     |||||||
Sbjct 1115  -------CAGA--AAATGTGAAACTTGCAGAAGAA----CAT-----------AAAGAAGAG-----AATAAAA  1159

Query 1196  CGTATTCCTTTCTTATCACGCTG---------GATGTGGATATCGGCGAG--CTGATCATGATCAAGTTCAAGT  1258
                       .|.|.|||.|||         ||    ||||      ||  |||.                  
Sbjct 1160  -----------ATGACCACTCTGCCCTCTCCAGA----GATA------AGCACTGT------------------  1194

Query 1259  GGGAAAACAGTGCAGTGTGGGCCAATGTCTGGGACACGGTCCAGACCATCATCCCATGGAGCACAGGGCCGCGC  1332
                                                                                      
Sbjct 1195  --------------------------------------------------------------------------  1194

Query 1333  CACTCAGGCCTCGTTCTGAAGACGATCAGAGTCAAAGCAGGAGAAACCCAGCAAAGAATGACATTTTGTTCAGA  1406
                                                                                      
Sbjct 1195  --------------------------------------------------------------------------  1194

Query 1407  AAACACAGATGACCTACTACTTCGCCCAACCCAGGAAAAAATCTTCGTGAAATGTGAAATAAAGTCTAAAACAT  1480
                                                                                      
Sbjct 1195  --------------------------------------------------------------------------  1194

Query 1481  CAAAGCGAAAGATCAGAG  1498
                              
Sbjct 1195  ------------------  1194