Nucleotide Global Alignment
Description
- Query:
- TRCN0000491572
- Subject:
- XR_002957208.1
- Aligned Length:
- 5266
- Identities:
- 1515
- Gaps:
- 3743
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGCTGAGAGGGCCCGCGGGTAGGCATGGCGGCGCACCTTAAGAAGCGGGTTTATGAGGAATTCACGAAAGTGGT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TCAGCCACAGGAGGAAATTGCTACTAAGAAACTCCGACTAACAAAACCAAGTAAATCTGCAGCACTCCACATAG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ATCTGTGTAAAGCTACCTCCCCAGCAGATGCTTTGCAATACTTGCTCCAGTTTGCCAGGAAGCCTGTCGAGGCG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GAAAGCGTAGAGGGAGTAGTCAGGATTCTCTTGGAACATTATTACAAGGAGAATGATCCATCTGTGAGACTGAA 296
Query 1 -----------------------------------------------------------------ATGCCATCA 9
|||||||||
Sbjct 297 AATTGCATCATTGTTGGGTTTATTATCAAAGACAGCAGGATTTTCACCAGACTGCATTATGGATGATGCCATCA 370
Query 10 ACATCCTGCAGAATGAAA-------------------------------------------------------- 27
||||||||||||||||||
Sbjct 371 ACATCCTGCAGAATGAAAAGTCTCATCAAGTCCTAGCTCAACTGCTGGATACTTTGCTTGCAATTGGCACTAAG 444
Query 28 ---------------------------------------------------CATCTGACAGATACGTCTCATGG 50
|||||||||||||||||||||||
Sbjct 445 CTACCAGAGAATCAAGCTATCCAAATGCGATTAGTTGATGTGGCCTGCAAGCATCTGACAGATACGTCTCATGG 518
Query 51 TGTAAGAAATAAGTGCCTGCAGTTACTTGGCAATCTTGGCTCTTTGGAGAAAAGTGTCACAAAAGATGCAGAAG 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TGTAAGAAATAAGTGCCTGCAGTTACTTGGCAATCTTGGCTCTTTGGAGAAAAGTGTCACAAAAGATGCAGAAG 592
Query 125 GCCTAGCTGCCAGAGATGTCCAGAAGATTATAGGGGATTACTTCAGTGACCAAGACCCACGTGTCAGAACAGCA 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GCCTAGCTGCCAGAGATGTCCAGAAGATTATAGGGGATTACTTCAGTGACCAAGACCCACGTGTCAGAACAGCA 666
Query 199 GCTATAAAAGCCATGTTGCAGCTCCATGAAAGAGGACTGAAATTACACCAAACAATTTATAATCAGGCCTGTAA 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GCTATAAAAGCCATGTTGCAGCTCCATGAAAGAGGACTGAAATTACACCAAACAATTTATAATCAGGCCTGTAA 740
Query 273 ATTACTCTCTGATGACTATGAACAAGTGCGCAGTGCTGCAGTCCAGCTTATCTGGGTCGTCAGTCAGCTCTATC 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 ATTACTCTCTGATGACTATGAACAAGTGCGCAGTGCTGCAGTCCAGCTTATCTGGGTCGTCAGTCAGCTCTATC 814
Query 347 CTGAAAGCATTGTCCCAATTCCTTCTTCTAATGAAGAAATACGCTTAGTTGATGATGCGTTTGGCAAAATTTGT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CTGAAAGCATTGTCCCAATTCCTTCTTCTAATGAAGAAATACGCTTAGTTGATGATGCGTTTGGCAAAATTTGT 888
Query 421 CACATGGTCAGTGATGGCTCTTGGGTGGTTCGTGTTCAGGCAGCAAAACTGTTGGGCTCTATGGAGCAAGTCAG 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CACATGGTCAGTGATGGCTCTTGGGTGGTTCGTGTTCAGGCAGCAAAACTGTTGGGCTCTATGGAGCAAGTCAG 962
Query 495 TTCTCATTTCTTGGAGCAGACCCTTGACAAGAAGCTGATGTCAGATCTGAGGAGGAAACGTACTGCACATGAGC 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TTCTCATTTCTTGGAGCAGACCCTTGACAAGAAGCTGATGTCAGATCTGAGGAGGAAACGTACTGCACATGAGC 1036
Query 569 GTGCCAAGGAACTTTACAGTTCGGGGGAGTTTTCCAGTGGCAGAAAGTGGGGAGATGATGCTCCCAAGGAAGAA 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 GTGCCAAGGAACTTTACAGTTCGGGGGAGTTTTCCAGTGGCAGAAAGTGGGGAGATGATGCTCCCAAGGAAGAA 1110
Query 643 GTAGATACCGGGGCTGTGAACTTGATTGAGTCAGGAGCTTGTGGAGCTTTTGTTCATGGGTTGGAAGATGAGAT 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GTAGATACCGGGGCTGTGAACTTGATTGAGTCAGGAGCTTGTGGAGCTTTTGTTCATGGGTTGGAAGATGAGAT 1184
Query 717 GTATGAGGTTCGTATTGCTGCTGTGGAGGCCCTCTGCATGTTGGCCCAGTCTTCACCCTCTTTTGCTGAGAAGT 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 GTATGAGGTTCGTATTGCTGCTGTGGAGGCCCTCTGCATGTTGGCCCAGTCTTCACCCTCTTTTGCTGAGAAGT 1258
Query 791 GCCTTGATTTCCTAGTTGACATGTTCAACGATGAAATTGAGGAAGTACGTCTGCAGTCTATACATACCATGAGA 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 GCCTTGATTTCCTAGTTGACATGTTCAACGATGAAATTGAGGAAGTACGTCTGCAGTCTATACATACCATGAGA 1332
Query 865 AAAATCTCTAACAACATCACCCTCCGAGAAGATCAGCTTGACACTGTCCTGGCTGTGCTAGAGGATTCATCCAG 938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 AAAATCTCTAACAACATCACCCTCCGAGAAGATCAGCTTGACACTGTCCTGGCTGTGCTAGAGGATTCATCCAG 1406
Query 939 AGATATTCGAGAGGCTCTTCATGAACTCTTATGCTGTACTAATGTTTCAACCAAAGAAGGGATTCATCTTGCAT 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 AGATATTCGAGAGGCTCTTCATGAACTCTTATGCTGTACTAATGTTTCAACCAAAGAAGGGATTCATCTTGCAT 1480
Query 1013 TGGTGGAGCTGCTGAAAAATTTAACCAAGTACCCTACTGATAGGGACTCCATATGGAAGTGCTTGAAGTTTCTG 1086
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 TGGTGGAGCTGCTGAAAAATTTAACCAAGTACCCTACTGATAGGGACTCCATATGGAAGTGCTTGAAGTTTCTG 1554
Query 1087 GGAAGTCGGCATCCAACCCTGGTGCTTCCCTTGGTGCCAGAGCTTCTGAGCACCCACCCATTTTTTGACACAGC 1160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 GGAAGTCGGCATCCAACCCTGGTGCTTCCCTTGGTGCCAGAGCTTCTGAGCACCCACCCATTTTTTGACACAGC 1628
Query 1161 TGAACCAGACATGGATGATCCAGCTTATATTGCAGTTTTGGTACTTATTTTCAATGCTGCTAAAACCTGTCCAA 1234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 TGAACCAGACATGGATGATCCAGCTTATATTGCAGTTTTGGTACTTATTTTCAATGCTGCTAAAACCTGTCCAA 1702
Query 1235 CAATGCCAGCATTGTTCTCAGATCACACCTTCAGGCACTATGCCTACCTCCGAGACAGTCTTTCTCATCTTGTT 1308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 CAATGCCAGCATTGTTCTCAGATCACACCTTCAGGCACTATGCCTACCTCCGAGACAGTCTTTCTCATCTTGTT 1776
Query 1309 CCTGCCTTGAGGTTACCAGGTAGAAAACTGGTGTCATCAGCTGTTTCTCCCAGCATCATACCTCAAGAGGATCC 1382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 CCTGCCTTGAGGTTACCAGGTAGAAAACTGGTGTCATCAGCTGTTTCTCCCAGCATCATACCTCAAGAGGATCC 1850
Query 1383 TTCCCAGCAGTTCCTGCAGCAGAGCCTTGAAAGAGTGTATAGTCTTCAGCACTTGGACCCTCAGGGAGCCCAGG 1456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 TTCCCAGCAGTTCCTGCAGCAGAGCCTTGAAAGAGTGTATAGTCTTCAGCACTTGGACCCTCAGGGAGCCCAGG 1924
Query 1457 AGCTGCTGGAATTCACCATCAGAG-------------TCGAG-GTTTCACCAT-----------GGTG------ 1499
||||||||||||||||||||||.| |.||| ..|||| || ||.|
Sbjct 1925 AGCTGCTGGAATTCACCATCAGGGATCTGCAAAGACTTGGAGAACTTCA--ATCTGAATTGGCAGGAGTAGCTG 1996
Query 1500 --------GCCA--------GGCTGGTCTCAA--ACTCCTGAGCTCAAG------------------------- 1530
|||| .|||| |||| |||.||.| |||||
Sbjct 1997 ATTTCTCTGCCACCTATCTTCGCTG---TCAACTACTTCTCA--TCAAGGCCTTGCAGGAAAAGTTGTGGAATG 2065
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 2066 TAGCTGCCCCTTTGTATTTGAAGCAGAGTGATTTGGCCTCAGCAGCAGCGAAACAGATTATGGAAGAGACCTAC 2139
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 2140 AAAATGGAATTCATGTACAGTGGTGTGGAGAATAAGCAGGTGGTGATTATACATCACATGAGGCTGCAGGCCAA 2213
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 2214 AGCTTTGCAACTTATAGTAACAGCACGAACTACACGAGGGACAGCTTTGTGGACAAACTCCTTGACCTTATGCC 2287
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 2288 CCGACTCATGACATCCAAACCTGCAGAAGTGGTCAAAATTCTACAGACCATGCTGCGACAGAGTGCCTTTCTGC 2361
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 2362 ATCTCCCGCTTCCAGAGCAGATCCACAAAGCCTCAGCCACCATCATCGAGCCAGCGGGCGAGTCAGACAACCCT 2435
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 2436 TTGCGGTTTACCTCTGGGTTGGTGGTTGCCCTGGATGTTGATGCAACCCTGGAGCATGTGCAGGATCCTCAGAA 2509
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 2510 CACTGTTAAGGTCCAGGTCTTATATCCAGATGGCCAGGCTCAGATGATTCACCCCAAGCCTGCAGACTTCCGGA 2583
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 2584 ATCCTGGCCCAGGGCGGCACCGGCTCATCACTCAGGTTTATCTCTCCCACACCGCTTGGACAGGATGTGCCATG 2657
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 2658 AAGCTGTAGCCAGGTGGAATTGTACCACAGCCCTGACATGAACACCTGATGGCAGCTGCTGGGTTGGAGCCTAG 2731
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 2732 ACAAAAACATGAAGAACCATGGCTGCTGCCTGAGCCCATCGTGCTGTAATTATAGAAAACCTTCTAAGGGAAGA 2805
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 2806 ATATGCTGATATTTTTCAGATAAGTACCCCTTTTATAAAAATCCTCCAAGTTAGCCCTCATTTTCCATGTAAGG 2879
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 2880 AAACAGAGGCTTTGAGATAATGTCTGTCTCCTAAGGGACAAAGCCAGGACTTGATCCTGTCTTAAAAATGCAAA 2953
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 2954 ATGTAGTACTTCTTCCATCAAAGGTAGACATGCACTAAGGGACAGGTTTTGGCTTGGTATCAGAATACATTTTT 3027
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 3028 AAAAGCTGTGTAAGAATTGAACGGGCTGTACTAGGGGGTATAGAATTCTCCAGGCTAGATGAGTTTGGGCAGAG 3101
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 3102 GTTGAACAAGCTCCTGACAAATTTGTTGCTAAGCAATTCAAGTATCGTATCGGGGTTGGGCTCAACTTTTTAAA 3175
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 3176 TTGCTTTTACCCTGAATTTTCACGTTCTGGGGAACATGAGAATTTTAGTTTTTCTCTATCTGATTCTGTACTTT 3249
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 3250 TTCACTGAAGTGAAAAAAAAAAAAAGACCTTTTTATAAAGGTTTCGAAGGGGGCATAAAGAGCACTCCAGTGTG 3323
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 3324 GCACCTTCATTTACAAATGAATACGCAGGCCCAGAGAGACTGAGTTAGTGGTGAAGCTAAGCCTGGAACCCAGG 3397
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 3398 CCTCTGGTTTCTTCCCCAGGTGACTTTCATCACAGGGGTCTGTTCTTAGTGAGTGGTCTAGCATGCACCCAGCA 3471
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 3472 GTCAGAGCCAGAAACCTGTTTGGCACGTTGGATTCCTTCCTCATCCCTCATACAAAAGTAGCCATCAAGTCCTT 3545
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 3546 TAGATTCCTCTTCCTTCATGTTTCTTAGTCCTCTTCTTATACTGTTTGTATACTGATGGAACCACCATCAGCCC 3619
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 3620 TCCTTAAGTGATGAGCTGATCTGACCACACCATTCCCCTGCTCAGTCCCTTTCAGTGGATCACTGCTCATCCCA 3693
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 3694 GGAAAAAGTCTGAACTCCTGTCTTGAAGGCTCTTCATGGCTCTGCTTCGTTTCCAGCCTCATACTCCCTGTCCC 3767
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 3768 AAACTGTCTCTGTACTCCACTTGAACAGAATTACCTGTAGTCTTTTTCTGTCACCTCTAGGCCTTTGGACCTGC 3841
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 3842 TGAGCCTGGGAATGTGCTCCTCAGACTGTCTCCTGTGGTTCTTTCCTTCCATTCTTCAGGACTGGGCCTTGTTC 3915
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 3916 TAGGACATATCTGTGTCTCTTATGGGCTTGGAACATTTCCTCTATGTTCCCACAGCCTCCTATACTATATTCTT 3989
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 3990 CACACATAGTATAGTATTTATTAATATGGCATTGCAGGTTCACAAATGCAAACCCCTTAAGAAAGGTAGGCAGG 4063
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 4064 AAAAGTAAAGGAATAAAGTGGCCTAGAAGATAACAGCAATTGGAAGAATCAGAGAGCACATTCTCTGTTGGAGA 4137
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 4138 AGGCGGTGCTATTCCATTCCACTCAGTTATTTTCATTTATAAGTGTGGACCTAGTGGTGTCAGTTCTTCCCATT 4211
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 4212 CTTCCAAAACAGCCAGAAATCTTCATTTTCATGAAAGTTAAAAAACCTTGGTAACTACAGTAAATATTAAAATT 4285
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 4286 ACTGAGACAAACAAAACATGTCTCCAGGCAGATTTGTGCCAATTTGCAACTTCTACATCCTCACTGTAATGTTT 4359
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 4360 ACACGCCTTATTTCTTCCAACTGATCTGTACCTGGACTGTAAGAATGTCTGTGCTGTATGCCCAGCACAACTCC 4433
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 4434 TGGCACATAACCGGGCAAGGAAAGAATGATTCTATGTCTCCAGAGCAAAGGTAGCAGTACCATGGCATGCTGCA 4507
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 4508 AAAAAAGATTCAGGTTTCTGAAAGGACTTTATATTTGCTTTGAGATGATTGAACTCAGCAAACACAATCATGGA 4581
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 4582 GAAGAAAGGTACACACCTAGCTGTGGCCAGCTTCATGTCTTTTTTTTTTTTTTTGAGATGGAGTCTTGCTCTGT 4655
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 4656 CACCCAGGCTGGAGTGCAGTGGCACGATCTCACCTCACAGCAGGCTCTGCCGCCCTGGTTCCAGCGATTCTCCT 4729
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 4730 GCCTCAGCCTCCCAAGTAGACTAGCTGGGATTACAGGCACGTGCCACCACGCCTGGCTAATTTTTGTATTTTTA 4803
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 4804 GTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTGCTGACCTCAGGTGATCTGCCCACCTCGGC 4877
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 4878 CTCCCAAAGCGCTGGGATTACAGGCGTGAGCCACCGCACCCGGCCAACTTCTTGTCTTAACCACTCAGGCTAGA 4951
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 4952 AGAAATGACCTGTGGGCAGCTTGAGGGCTGTTCTACCTACAAACTAACTCAGAGGCTTTAATGATTTAAGACAG 5025
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 5026 AGGACTAAGTATAGTTATGTGGAGAAACAGCTTCCCTTCAAGCTCTACATATTTCCATCGTTAACCATGTGCAC 5099
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 5100 CAGGTTCCAAAGTAGGGGCTATGTATTAGCAGGTTTTCTTAAAAGTTTAATAATGTCACTGACAGATACTTCTG 5173
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 5174 TCTCTAAGAAGTTTACACTAAGTTCTCTTTAATTGGAGACAACTCACTTAGGAAGAATGATTACACCCACACTG 5247
Query 1531 ------------ 1530
Sbjct 5248 AATTCAACACCC 5259