Nucleotide Global Alignment

Description

Query:
TRCN0000491583
Subject:
XM_011241137.1
Aligned Length:
2530
Identities:
2026
Gaps:
359

Alignment

Query    1  ATGGCGGCGCTGA------------------------------------------------GCGGTGGCGGT--  24
            |||||||||||||                                                |||||||||||  
Sbjct    1  ATGGCGGCGCTGAGTGGCGGCGGTGGCAGCAGCAGCGGTGGCGGCGGCGGCGGTGGCGGCGGCGGTGGCGGTGG  74

Query   25  -------GGTGGCGGCGCGGAGCCGGGCCAGGCTCTGTTCAACGGGGACATGGAGCCCGAGGCCGGCGCCGGCG  91
                   ||.||||||||.||||.||||||||||||||||||.||.|||||||||||.|||      |||||||
Sbjct   75  CGACGGCGGCGGCGGCGCCGAGCAGGGCCAGGCTCTGTTCAATGGCGACATGGAGCCGGAG------GCCGGCG  142

Query   92  CCGGCGCCGCGGCCTCTTCGGCTGCGGACCCTGCCATTCCGGAGGAGGTGTGGAATATCAAACAAATGATTAAG  165
            |.|||||||||||||||||||||||||||||.||||||||.||.|||||.|||||||||||.||||||||||||
Sbjct  143  CTGGCGCCGCGGCCTCTTCGGCTGCGGACCCGGCCATTCCTGAAGAGGTATGGAATATCAAGCAAATGATTAAG  216

Query  166  TTGACACAGGAACATATAGAGGCCCTATTGGACAAATTTGGTGGGGAGCATAATCCACCATCAATATATCTGGA  239
            ||||||||||||||||||||||||||||||||||||||||||||.||||||||.||||||||||||||.|||||
Sbjct  217  TTGACACAGGAACATATAGAGGCCCTATTGGACAAATTTGGTGGAGAGCATAACCCACCATCAATATACCTGGA  290

Query  240  GGCCTATGAAGAATACACCAGCAAGCTAGATGCACTCCAACAAAGAGAACAACAGTTATTGGAATCTCTGGGGA  313
            ||||||||||||.||||||||||||||||||||.||.||.|||||||||||.|||.|.||||||||.||||   
Sbjct  291  GGCCTATGAAGAGTACACCAGCAAGCTAGATGCCCTTCAGCAAAGAGAACAGCAGCTTTTGGAATCCCTGG---  361

Query  314  ACGGAACTGATTTTTCTGTTTCTAGCTCTGCATCAATGGATACCGTTACATCTTCTTCCTCTTCTAGCCTTTCA  387
                                       .|||||                                         
Sbjct  362  ---------------------------ATGCAT-----------------------------------------  367

Query  388  GTGCTACCTTCATCTCTTTCAGTTTTTCAAAATCCCACAGATGTGGCACGGAGCAACCCCAAGTCACCACAAAA  461
                                                          ||||||.||||||||||||||||||.||
Sbjct  368  ----------------------------------------------CACGGAACAACCCCAAGTCACCACAGAA  395

Query  462  ACCTATCGTTAGAGTCTTCCTGCCCAACAAACAGAGGACAGTGGTACCTGCAAGGTGTGGAGTTACAGTCCGAG  535
            ||||||||||||||||||||||||||||||||||||||||||||||||.|||||.|||||.||||||||.||||
Sbjct  396  ACCTATCGTTAGAGTCTTCCTGCCCAACAAACAGAGGACAGTGGTACCCGCAAGATGTGGTGTTACAGTTCGAG  469

Query  536  ACAGTCTAAAGAAAGCACTGATGATGAGAGGTCTAATCCCAGAGTGCTGTGCTGTTTACAGAATTCAGGATGG-  608
            ||||||||||||||||||||||||||||||||||.||||||||.||||||||||||||||||||||||||||| 
Sbjct  470  ACAGTCTAAAGAAAGCACTGATGATGAGAGGTCTCATCCCAGAATGCTGTGCTGTTTACAGAATTCAGGATGGG  543

Query  609  --------AGAGAAGAAACCAATTGGTTGGGACACTGATATTTCCTGGCTTACTGGAGAAGAATTGCATGTGGA  674
                    ||||||||||||||||||.||||||||.||.||||||||||||||||||||.||.||.|||||.||
Sbjct  544  TATGGTTTAGAGAAGAAACCAATTGGCTGGGACACGGACATTTCCTGGCTTACTGGAGAGGAGTTACATGTTGA  617

Query  675  AGTGTTGGAGAATGTTCCACTTACAACACACAACTTTGTACGAAAAACGTTTTTCACCTTAGCATTTTGTGACT  748
            |||..||||||||||.||||||||||||||||||||||||||.|||||.|||||||||||||||||||||||||
Sbjct  618  AGTACTGGAGAATGTCCCACTTACAACACACAACTTTGTACGGAAAACTTTTTTCACCTTAGCATTTTGTGACT  691

Query  749  TTTGTCGAAAGCTGCTTTTCCAGGGTTTCCGCTGTCAAACATGTGGTTATAAATTTCACCAGCGTTGTAGTACA  822
            ||||.||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||
Sbjct  692  TTTGCCGAAAGCTGCTTTTCCAGGGTTTCCGTTGTCAAACATGTGGTTATAAATTTCACCAGCGTTGTAGTACA  765

Query  823  GAAGTTCCACTGATGTGTGTTAATTATGACCAACTTGATTTGCTGTTTGTCTCCAAGTTCTTTGAACACCACCC  896
            ||.|||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||.||.|||||
Sbjct  766  GAGGTTCCACTGATGTGTGTAAATTATGACCAACTTGATTTGCTGTTTGTCTCCAAGTTCTTTGAGCATCACCC  839

Query  897  AATACCACAGGAAGAGGCGTCCTTAGCAGAGACTGCCCTAACATCTGGATCATCCCCTTCCGCACCCGCCTCGG  970
            |.||||||||||.|||||.|||||..|||||||||||||..|||||||   ||||.|||||||||||.||||.|
Sbjct  840  AGTACCACAGGAGGAGGCCTCCTTCCCAGAGACTGCCCTTCCATCTGG---ATCCTCTTCCGCACCCCCCTCAG  910

Query  971  ACTCTATTGGGCCCCAAATTCTCACCAGTCCGTCTCCTTCAAAATCCATTCCAATTCCACAGCCCTTCCGACCA  1044
            ||||||.||||||||||||.|||||||||||.||||||||||||||||||||||||||||||||||||||||||
Sbjct  911  ACTCTACTGGGCCCCAAATCCTCACCAGTCCATCTCCTTCAAAATCCATTCCAATTCCACAGCCCTTCCGACCA  984

Query 1045  GCAGATGAAGATCATCGAAATCAATTTGGGCAACGAGACCGATCCTCATCAGCTCCCAATGTGCATATAAACAC  1118
            |||||||||||||||||.|||||.|||||||||||||||||.|||||.||||||||||||||.|||||||||||
Sbjct  985  GCAGATGAAGATCATCGCAATCAGTTTGGGCAACGAGACCGGTCCTCCTCAGCTCCCAATGTTCATATAAACAC  1058

Query 1119  AATAGAACCTGTCAATATTGAT------------------------------------GACTTGATTAGAGACC  1156
            |||.||.|||||.|||||.|||                                    ||.|||||||||||||
Sbjct 1059  AATTGAGCCTGTGAATATCGATGAAAAATTCCCAGAAGTGGAATTACAGGATCAAAGGGATTTGATTAGAGACC  1132

Query 1157  AAGGATTTCGTGGTGATG--------------------------------------------------------  1174
            |.||.|||||||||||||                                                        
Sbjct 1133  AGGGGTTTCGTGGTGATGGAGCCCCCTTGAACCAACTGATGCGCTGTCTTCGGAAATACCAATCCCGGACTCCC  1206

Query 1175  ----------------------------------------------------------------GAGGATCAAC  1184
                                                                            ||||.|||||
Sbjct 1207  AGCCCCCTCCTCCATTCTGTCCCCAGTGAAATAGTGTTTGATTTTGAGCCTGGCCCAGTGTTCAGAGGGTCAAC  1280

Query 1185  CACAGGTTTGTCTGCTACCCCCCCTGCCTCATTACCTGGCTCACTAACTAACGTGAAAGCCTTACAGAAATCTC  1258
            ||||||.|||||.||.|||||.|||||||||||||||||||||||.||||||||||||||||||||||||||||
Sbjct 1281  CACAGGCTTGTCCGCCACCCCGCCTGCCTCATTACCTGGCTCACTCACTAACGTGAAAGCCTTACAGAAATCTC  1354

Query 1259  CAGGACCTCAGCGAGAAAGGAAGTCATCT------TCATCCTCAGAAGACAGGAATCGAATGAAAACACTTGGT  1326
            ||||.||||||||.|||||||||||||||      ||||||||.||.|||||.|.|||.|||||||||||||||
Sbjct 1355  CAGGTCCTCAGCGGGAAAGGAAGTCATCTTCTTCCTCATCCTCGGAGGACAGAAGTCGGATGAAAACACTTGGT  1428

Query 1327  AGACGGGACTCGAGTGATGATTGGGAGATTCCTGATGGGCAGATTACAGTGGGACAAAGAATTGGATCTGGATC  1400
            |||.|.||.||.||||||||.|||||||||||||||||.|||||||||||||||||.||||||||||||||.||
Sbjct 1429  AGAAGAGATTCAAGTGATGACTGGGAGATTCCTGATGGACAGATTACAGTGGGACAGAGAATTGGATCTGGGTC  1502

Query 1401  ATTTGGAACAGTCTACAAGGGAAAGTGGCATGGTGATGTGGCAGTGAAAATGTTGAATGTGACAGCACCTACAC  1474
            |||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||
Sbjct 1503  ATTTGGAACTGTCTACAAGGGAAAGTGGCATGGTGATGTGGCAGTGAAAATGTTGAATGTGACAGCACCCACAC  1576

Query 1475  CTCAGCAGTTACAAGCCTTCAAAAATGAAGTAGGAGTACTCAGGAAAACACGACATGTGAATATCCTACTCTTC  1548
            ||||.|||.||||.|||||||||||||||||||||||.|||||||||||.|||||||||||||||||.||.|||
Sbjct 1577  CTCAACAGCTACAGGCCTTCAAAAATGAAGTAGGAGTGCTCAGGAAAACTCGACATGTGAATATCCTCCTTTTC  1650

Query 1549  ATGGGCTATTCCACAAAGCCACAACTGGCTATTGTTACCCAGTGGTGTGAGGGCTCCAGCTTGTATCACCATCT  1622
            |||||||||||.|||||||||||||||||.||||||||.|||||||||||||||||||||||.|||||||||||
Sbjct 1651  ATGGGCTATTCTACAAAGCCACAACTGGCAATTGTTACACAGTGGTGTGAGGGCTCCAGCTTATATCACCATCT  1724

Query 1623  CCATATCATTGAGACCAAATTTGAGATGATCAAACTTATAGATATTGCACGACAGACTGCACAGGGCATGGATT  1696
            |||.||||||||||||||||||||||||||||||||||||||||||||.||.||||||||||||||||||||||
Sbjct 1725  CCACATCATTGAGACCAAATTTGAGATGATCAAACTTATAGATATTGCTCGGCAGACTGCACAGGGCATGGATT  1798

Query 1697  ACTTACACGCCAAGTCAATCATCCACAGAGACCTCAAGAGTAATAATATATTTCTTCATGAAGACCTCACAGTA  1770
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||
Sbjct 1799  ACTTACACGCCAAGTCAATCATCCACAGAGACCTCAAGAGTAATAATATATTTCTTCATGAAGACCTCACGGTA  1872

Query 1771  AAAATAGGTGATTTTGGTCTAGCTACAGAGAAATCTCGATGGAGTGGGTCCCATCAGTTTGAACAGTTGTCTGG  1844
            |||||||||||.|||||||||||.||||.|||||||||.|||||||||||||||||||||||||||||||||||
Sbjct 1873  AAAATAGGTGACTTTGGTCTAGCCACAGTGAAATCTCGGTGGAGTGGGTCCCATCAGTTTGAACAGTTGTCTGG  1946

Query 1845  ATCCATTTTGTGGATGGCACCAGAAGTCATCAGAATGCAAGATAAAAATCCATACAGCTTTCAGTCAGATGTAT  1918
            |||.|||||||||||||||||||||||.||||||||||||||||||||.||.||.||||||||||||||.||.|
Sbjct 1947  ATCTATTTTGTGGATGGCACCAGAAGTAATCAGAATGCAAGATAAAAACCCGTATAGCTTTCAGTCAGACGTGT  2020

Query 1919  ATGCATTTGGAATTGTTCTGTATGAATTGATGACTGGACAGTTACCTTATTCAAACATCAACAACAGGGACCAG  1992
            ||||.|||||.|||||||||||.|||.|||||||.||.|||.||||||||||||||||||||||||||||.|||
Sbjct 2021  ATGCGTTTGGGATTGTTCTGTACGAACTGATGACCGGCCAGCTACCTTATTCAAACATCAACAACAGGGATCAG  2094

Query 1993  ATAATTTTTATGGTGGGACGAGGATACCTGTCTCCAGATCTCAGTAAGGTACGGAGTAACTGTCCAAAAGCCAT  2066
            |||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2095  ATAATTTTTATGGTGGGACGAGGATACCTATCTCCAGATCTCAGTAAGGTACGGAGTAACTGTCCAAAAGCCAT  2168

Query 2067  GAAGAGATTAATGGCAGAGTGCCTCAAAAAGAAAAGAGATGAGAGACCACTCTTTCCCCAAATTCTCGCCTCTA  2140
            |||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||.|
Sbjct 2169  GAAGAGATTAATGGCAGAGTGCCTCAAAAAGAAAAGAGACGAGAGACCACTCTTTCCCCAAATTCTCGCCTCCA  2242

Query 2141  TTGAGCTGCTGGCCCGCTCATTGCCAAAAATTCACCGCAGTGCATCAGAACCCTCCTTGAATCGGGCTGGTTTC  2214
            ||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||
Sbjct 2243  TTGAGCTGCTGGCCCGCTCATTGCCAAAAATTCACCGCAGTGCATCAGAACCTTCCTTGAATCGGGCTGGTTTC  2316

Query 2215  CAAACAGAGGATTTTAGTCTATATGCTTGTGCTTCTCCAAAAACACCCATCCAGGCAGGGGGATATGGTGCGTT  2288
            ||||||||.|||||||||||.|||||||||||||||||.||||||||||||||.||||||||||||||.|..||
Sbjct 2317  CAAACAGAAGATTTTAGTCTGTATGCTTGTGCTTCTCCGAAAACACCCATCCAAGCAGGGGGATATGGAGAATT  2390

Query 2289  T----CCTGTCCAC  2298
            |    ||| ||.|.
Sbjct 2391  TGCAGCCT-TCAAG  2403

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