Nucleotide Global Alignment
Description
- Query:
- TRCN0000491583
- Subject:
- XR_001785085.1
- Aligned Length:
- 2734
- Identities:
- 1187
- Gaps:
- 1448
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CCATGGAAACTGTGCGGGTAGAAACGTGTGAGCGCGAGGGTGGTTGGAGGAGAAGGAACACTCCCCTGGCGACA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCGGCGCGAGGGTGCTCCTCGGATGACGTCACGCACCCAGGTGACGTCACGACCGTGACATGCGGGTGACGCCG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TTGCCGCGGCGACTCCTCGTCGTCTCCGCCCCCTCCCCCCCCCAAATCCCCTCAGGCTCGGCTGCGCCGGGGCC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GCCGGCGGGTTCCAGAGGTGGCCTCCGCCCCGGCCGCTCCGCCCACGCCCCCCGCGCCTCCGCGCCCGCCTCCG 296
Query 1 --------------------------------------------------------------------ATGGCG 6
||||||
Sbjct 297 CCCGCCCTGCGCCTCCCTTCCCCCTCCCCGCCCCGCGGCGGCCGCTCGGCCCGGCTCGCGCTTCGAAGATGGCG 370
Query 7 GCGCTGA------------------------------------------------GCGGTGGCGGT-------- 24
||||||| |||||||||||
Sbjct 371 GCGCTGAGTGGCGGCGGTGGCAGCAGCAGCGGTGGCGGCGGCGGCGGTGGCGGCGGCGGTGGCGGTGGCGACGG 444
Query 25 -GGTGGCGGCGCGGAGCCGGGCCAGGCTCTGTTCAACGGGGACATGGAGCCCGAGGCCGGCGCCGGCGCCGGCG 97
||.||||||||.||||.||||||||||||||||||.||.|||||||||||.||| ||||||||.||||
Sbjct 445 CGGCGGCGGCGCCGAGCAGGGCCAGGCTCTGTTCAATGGCGACATGGAGCCGGAG------GCCGGCGCTGGCG 512
Query 98 CCGCGGCCTCTTCGGCTGCGGACCCTGCCATTCCGGAGGAGGTGTGGAATATCAAACAAATGATTAAGTTGACA 171
|||||||||||||||||||||||||.||||||||.||.|||||.|||||||||||.||||||||||||||||||
Sbjct 513 CCGCGGCCTCTTCGGCTGCGGACCCGGCCATTCCTGAAGAGGTATGGAATATCAAGCAAATGATTAAGTTGACA 586
Query 172 CAGGAACATATAGAGGCCCTATTGGACAAATTTGGTGGGGAGCATAATCCACCATCAATATATCTGGAGGCCTA 245
||||||||||||||||||||||||||||||||||||||.||||||||.||||||||||||||.|||||||||||
Sbjct 587 CAGGAACATATAGAGGCCCTATTGGACAAATTTGGTGGAGAGCATAACCCACCATCAATATACCTGGAGGCCTA 660
Query 246 TGAAGAATACACCAGCAAGCTAGATGCACTCCAACAAAGAGAACAACAGTTATTGGAATCTCTGGGGAACGGAA 319
||||||.||||||||||||||||||||.||.||.|||||||||||.|||.|.||||||||.|||||.||.|||.
Sbjct 661 TGAAGAGTACACCAGCAAGCTAGATGCCCTTCAGCAAAGAGAACAGCAGCTTTTGGAATCCCTGGGTAATGGAG 734
Query 320 CTGATTTTTCTGTTTCTAGCTCTGCATCAATGGATACCGTTACATCTTCTTCCTCTTCTAGCCTTTCAGTGCTA 393
|.||||||||||||||||||||||||||||||||.|||||||||||.||.||||||||||||||||||||||||
Sbjct 735 CAGATTTTTCTGTTTCTAGCTCTGCATCAATGGACACCGTTACATCCTCCTCCTCTTCTAGCCTTTCAGTGCTA 808
Query 394 CCTTCATCTCTTTCAGTTTTTCAAAATCCCACAGATGTGGCACGGAGCAACCCCAAGTCACCACAAAAACCTAT 467
||.||||||||||||||||||||||.|||||||||||...||||||.||||||||||||||||||.||||||||
Sbjct 809 CCATCATCTCTTTCAGTTTTTCAAACTCCCACAGATGCATCACGGAACAACCCCAAGTCACCACAGAAACCTAT 882
Query 468 CGTTAGAGTCTTCCTGCCCAACAAACAGAGGACAGTGGTACCTGCAAGGTGTGGAGTTACAGTCCGAGACAGTC 541
||||||||||||||||||||||||||||||||||||||||||.|||||.|||||.||||||||.||||||||||
Sbjct 883 CGTTAGAGTCTTCCTGCCCAACAAACAGAGGACAGTGGTACCCGCAAGATGTGGTGTTACAGTTCGAGACAGTC 956
Query 542 TAAAGAAAGCACTGATGATGAGAGGTCTAATCCCAGAGTGCTGTGCTGTTTACAGAATTCAGGATGG------- 608
||||||||||||||||||||||||||||.||||||||.|||||||||||||||||||||||||||||
Sbjct 957 TAAAGAAAGCACTGATGATGAGAGGTCTCATCCCAGAATGCTGTGCTGTTTACAGAATTCAGGATGGGTATGGT 1030
Query 609 --AGAGAAGAAACCAATTGGTTGGGACACTGATATTTCCTGGCTTACTGGAGAAGAATTGCATGTGGAAGTGTT 680
||||||||||||||||||.||||||||.||.||||||||||||||||||||.||.||.|||||.|||||..|
Sbjct 1031 TTAGAGAAGAAACCAATTGGCTGGGACACGGACATTTCCTGGCTTACTGGAGAGGAGTTACATGTTGAAGTACT 1104
Query 681 GGAGAATGTTCCACTTACAACACACAACTTTGTACGAAAAACGTTTTTCACCTTAGCATTTTGTGACTTTTGTC 754
|||||||||.||||||||||||||||||||||||||.|||||.|||||||||||||||||||||||||||||.|
Sbjct 1105 GGAGAATGTCCCACTTACAACACACAACTTTGTACGGAAAACTTTTTTCACCTTAGCATTTTGTGACTTTTGCC 1178
Query 755 GAAAGCTGCTTTTCCAGGGTTTCCGCTGTCAAACATGTGGTTATAAATTTCACCAGCGTTGTAGTACAGAAGTT 828
|||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||.|||
Sbjct 1179 GAAAGCTGCTTTTCCAGGGTTTCCGTTGTCAAACATGTGGTTATAAATTTCACCAGCGTTGTAGTACAGAGGTT 1252
Query 829 CCACTGATGTGTGTTAATTATGACCAACTTGATTTGCTGTTTGTCTCCAAGTTCTTTGAACACCACCCAATACC 902
||||||||||||||.||||||||||||||||| ||||||||.||.||||||.||||
Sbjct 1253 CCACTGATGTGTGTAAATTATGACCAACTTGA-------------------TTCTTTGAGCATCACCCAGTACC 1307
Query 903 ACAGGAAGAGGCGTCCTTAGCAGAGACTGCCCTAACATCTGGATCATCCCCTTCCGCACCCGCCTCGGACTCTA 976
||||||.|||||.|||||..|||||||||||||..||||||| ||||.|||||||||||.||||.|||||||
Sbjct 1308 ACAGGAGGAGGCCTCCTTCCCAGAGACTGCCCTTCCATCTGG---ATCCTCTTCCGCACCCCCCTCAGACTCTA 1378
Query 977 TTGGGCCCCAAATTCTCACCAGTCCGTCTCCTTCAAAATCCATTCCAATTCCACAGCCCTTCCGACCAGCAGAT 1050
.||||||||||||.|||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 CTGGGCCCCAAATCCTCACCAGTCCATCTCCTTCAAAATCCATTCCAATTCCACAGCCCTTCCGACCAGCAGAT 1452
Query 1051 GAAGATCATCGAAATCAATTTGGGCAACGAGACCGATCCTCATCAGCTCCCAATGTGCATATAAACACAATAGA 1124
|||||||||||.|||||.|||||||||||||||||.|||||.||||||||||||||.||||||||||||||.||
Sbjct 1453 GAAGATCATCGCAATCAGTTTGGGCAACGAGACCGGTCCTCCTCAGCTCCCAATGTTCATATAAACACAATTGA 1526
Query 1125 ACCTGTCAATATTGATGACTTGATTAGAGACCAAGGATTTCGTGGTGATGGAGGATCAACCACAGGTTTGTCTG 1198
.|||||.|||||.|||||.||||||||||||||.||.|||||||||||||||||.|||||||||||.|||||.|
Sbjct 1527 GCCTGTGAATATCGATGATTTGATTAGAGACCAGGGGTTTCGTGGTGATGGAGGGTCAACCACAGGCTTGTCCG 1600
Query 1199 CTACCCCCCCTGCCTCATTACCTGGCTCACTAACTAACGTGAAAGCCTTACAGAAATCTCCAGGACCTCAGCGA 1272
|.|||||.|||||||||||||||||||||||.||||||||||||||||||||||||||||||||.||||||||.
Sbjct 1601 CCACCCCGCCTGCCTCATTACCTGGCTCACTCACTAACGTGAAAGCCTTACAGAAATCTCCAGGTCCTCAGCGG 1674
Query 1273 GAAAGGAAGTCATCT------TCATCCTCAGAAGACAGGAATCGAATGAAAACACTTGGTAGACGGGACTCGAG 1340
||||||||||||||| ||||||||.||.|||||.|.|||.|||
Sbjct 1675 GAAAGGAAGTCATCTTCTTCCTCATCCTCGGAGGACAGAAGTCGGATG-------------------------- 1722
Query 1341 TGATGATTGGGAGATTCCTGATGGGCAGATTACAGTGGGACAAAGAATTGGATCTGGATCATTTGGAACAGTCT 1414
Sbjct 1723 -------------------------------------------------------------------------- 1722
Query 1415 ACAAGGGAAAGTGGCATGGTGATGTGGCAGTGAAAATGTTGAATGTGACAGCACCTACACCTCAGCAGTTACAA 1488
Sbjct 1723 -------------------------------------------------------------------------- 1722
Query 1489 GCCTTCAAAAATGAAGTAGGAGTACTCAGGAAAACACGACATGTGAATATCCTACTCTTCATGGGCTATTCCAC 1562
Sbjct 1723 -------------------------------------------------------------------------- 1722
Query 1563 AAAGCCACAACTGGCTATTGTTACCCAGTGGTGTGAGGGCTCCAGCTTGTATCACCATCTCCATATCATTGAGA 1636
Sbjct 1723 -------------------------------------------------------------------------- 1722
Query 1637 CCAAATTTGAGATGATCAAACTTATAGATATTGCACGACAGACTGCACAGGGCATGGATTACTTACACGCCAAG 1710
Sbjct 1723 -------------------------------------------------------------------------- 1722
Query 1711 TCAATCATCCACAGAGACCTCAAGAGTAATAATATATTTCTTCATGAAGACCTCACAGTAAAAATAGGTGATTT 1784
Sbjct 1723 -------------------------------------------------------------------------- 1722
Query 1785 TGGTCTAGCTACAGAGAAATCTCGATGGAGTGGGTCCCATCAGTTTGAACAGTTGTCTGGATCCATTTTGTGGA 1858
Sbjct 1723 -------------------------------------------------------------------------- 1722
Query 1859 TGGCACCAGAAGTCATCAGAATGCAAGATAAAAATCCATACAGCTTTCAGTCAGATGTATATGCATTTGGAATT 1932
Sbjct 1723 -------------------------------------------------------------------------- 1722
Query 1933 GTTCTGTATGAATTGATGACTGGACAGTTACCTTATTCAAACATCAACAACAGGGACCAGATAATTTTTATGGT 2006
Sbjct 1723 -------------------------------------------------------------------------- 1722
Query 2007 GGGACGAGGATACCTGTCTCCAGATCTCAGTAAGGTACGGAGTAACTGTCCAAAAGCCATGAAGAGATTAATGG 2080
Sbjct 1723 -------------------------------------------------------------------------- 1722
Query 2081 CAGAGTGCCTCAAAAAGAAAAGAGATGAGAGACCACTCTTTCCCCAAATTCTCGCCTCTATTGAGCTGCTGGCC 2154
Sbjct 1723 -------------------------------------------------------------------------- 1722
Query 2155 CGCTCATTGCCAAAAATTCACCGCAGTGCATCAGAACCCTCCTTGAATCGGGCTGGTTTCCAAACAGAGGATTT 2228
Sbjct 1723 -------------------------------------------------------------------------- 1722
Query 2229 TAGTCTATATGCTTGTGCTTCTCCAAAAACACCCATCCAGGCAGGGGGATATGGTGCGTTTCCTGTCCAC 2298
Sbjct 1723 ---------------------------------------------------------------------- 1722
