Nucleotide Global Alignment

Description

Query:
TRCN0000492083
Subject:
NR_110251.1
Aligned Length:
4209
Identities:
63
Gaps:
4137

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGTATTCTGTAAGGACATTTGTGTTTATATATATCTGTCATATGTATATATATATCATATATATATCAGTCATA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TATATATCTCACACATATATGTAAGTGATTTTATGCTATGTATCTTTTTTTCTTCTGATATCTTTTTCTGGTTT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CAATGTTAGTTTAATGCTAGCTTCATCAAATAAGTTGGGAAGTGGTCTTTTACTCATATTTTGAAAGAATTTGT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GTAGAATTACTATAAATTGTTAAGGAGAATTTTTGTAGAATTTGCTAGTGAATATATTTATGTTTTGAATTTTC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TTTTGTGGAAGGTTTTTACTACAAATTCCACTTACTTAGTAGAATTAAGATTATTCAAGTTATCTAATTTTTTA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CTGAGTAATTCTGGTCTCATTATGTCTTTCAAGGGAATTTTTTTCATTTTTTAATATCATTTTATAGCTTTATA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TTAAAAGTTCTGAATATGAGTGGCTCTCTGCCTGCTCCCTTTCACCACCTTAATATCTTAAGTGAATAATGCAT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TCTCATCAAGAGGGTTAAAACTAATCATCAGCTGATGGCAGTTCACTTTTTGAATTACAAAAAACTTTCCCCCT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CAGGCCATTTATTTTACTCATAAGCAACCTAACTATATTATAGATTCTAAAATATTATCTCCAAAGCCCCTAGA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  AGATGCATACATTTAGTCCAAAAGGTTTAATAACTCCCCAAGCTGATATTTCCCTTTCTCCTTTGATATTTCCA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TAATTTGGAGTGCCCATTGTCTGTTTTATTTCATATTGGGACAAGCTGAACAGGGACTAAGGTGAAGGCAGAGA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GGCATTCAGGGCAAATCGTTTAAGGAGGTACTACAAATACAAGGTCAACACTTGCAGGAAACTAAGAAAGAGTG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  TCTCCTTAAAATTTGTGTCCTAGGTGTCTTATCTAGTTCTGGCCTTTTTAATGTGAATTCTTTTTTTTTTTTTT  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  TTTGAGATGAAGTCTGGCTCTGTCACCCAGGCTAGAGTGCACTGGTGCGATCTCGCCTGACTGCAACCTCCACC  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  TCCTGGGTTCAAGGGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGCACCACCACACCTGG  1110

Query    1  ------------------------ATGGGGTTTCTCCATGTCGGTCAGGCTGGTCTGGAACTCCTGACCTCAGG  50
                                    |..|||||||.||||||.||.|||||||||||.|||||||||||||.|||
Sbjct 1111  CTAATTTTTGTATTTTTAGTGGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTGAGG  1184

Query   51  TGATCCGCCCACCTCAGCCTCC----------------------------------------------------  72
            ||||||.||||||||.||||||                                                    
Sbjct 1185  TGATCCACCCACCTCGGCCTCCCAAAGTGCTGTGATTACAGGCATCAACCACTGCACCCAGCTTGAATTCTTTG  1258

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1259  TGTCCTCTAAAAACTCAAAATTATTTTTTAGTATTTTACCAGAAACATGGGAGGCATCAATTTAAAAGGAATGC  1332

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1333  ACAGAAGACACTTCATCACTACTTCCAACCAAGCAGTAATGGGCTGGAGATCCTAGATTAAGCTACTGGCAGAT  1406

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1407  CTGGTGTCTGGCGAGGGCTCTGCTCCTGGTTTGCAGATGGGTGTCCTCTCATTATGCCCTCGCATGGTTGAGAG  1480

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1481  AAAAATCATCGTTCTTCTGTTTCTTCTTAGAAGGGCACTAATTTTATTCATGAGCTCCATCCTCATGACCTAAT  1554

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1555  CACAGCCTAAAGGCCTCACCTCCTAATACTATTATATTGGGGGTTTAGATTGCAACGTATGTATTTGGGGGGGT  1628

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1629  CGGCACAAACATTCAGCTCATAACATCTTGTGAATCACTTTTAATTGCAATGTTGGAACATTGCTTTAAAATGA  1702

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1703  TGCAGGTCTTATTTCCATATATGCATTAGGCAGTTCTTGCATTGCTATAAAGAAATACAGGAAACTGGGTAATT  1776

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1777  TATAAATAAAAGAGGTTTAATTGGCTCACAGTTCTGTAGGCTTTACAGGAAGCATGGTGGTGCTCAGATCTGCT  1850

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1851  TGGCATCTAGGGAGGCCTCAGGAAGCTTCCATTCATGGCAGAAGGTGAAGACAGAGTAGGTATGTCGTGTAGTA  1924

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1925  AAAGCAGGAATACGCAAGAGACAGAGTGGGGGGCGGTGCCAAACACTTTTAAATGACCACATCTCATATGAATT  1998

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1999  CAGGGCAAGAGCTCACTTAATCACCAAGGGGTTGGCCCAAACCATTCATGAGGGATCTGCCCCCATTATCCAAA  2072

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2073  TCCCTCTGCCAGTCTCCAACATTAGGAGTTACACTTCAACACGAGATTTGAGTGGGGACAAATATCCAAACTAT  2146

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2147  ATTAAGAAGAAACGCAGCAGTTCCCAATTTTGTCTCTCATCACCCTCCCACACACCAAATCATATATGTGAGGA  2220

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2221  GTACTTTTATATGCACAACTTGCCCTATTTAGAACTGTTCTGGAATGAGTGCATTTCCCATAGTACTATCTAAA  2294

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2295  ATTCCATCCCCTGCAGTTCCCTTCAAGAAACCACATGACAGTATCAATAATGCATTGCATTTTAGGAATAAAGT  2368

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2369  TAAATATTTTCTAATTTATTTTAACCATTAATAAACTGTTCTTAACTCTTTTTATAACAATAATTTTTAGATCA  2442

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2443  GTTCACAAGTGATTACAACACACACGGCAGCAAGATGGATAATTGCTGTCCTAATGCATACATTACACTAAACA  2516

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2517  TTATTACATACAATGATATTGCCAAGGATTTAAAATTTTGATCAGCAGTTTCAGGAAGCTAGGAGCTTTTAACT  2590

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2591  AAATGGATGAATCATGGAGAAGAGTCCCGCCATTTCTCGTTCAAGATTGGTGACTCAGTGTCAGTGGGACATGA  2664

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2665  GACTTCTATGATCTGACCTTAGAATGACCCCTTTTTATGGTGGAACAAGGTTTTAAGCAAGGCCATTCCCCTGG  2738

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2739  AGCCATAAAGGATTGACTAGGGAAGATTGCACTGAGCTTTGCTATGAACAGGGCTGCTGCATTTTTGTGATTTT  2812

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2813  TCCCCAGTCTGTGGTTTTTCCTGAGCCTGTATCCAGACAGTGGTCATTCCAAGTCCAGCTTTGCTGTCTGTTAC  2886

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2887  AGCTTCTGTTTGACTATGTCTTTATACTCTTGCCTTATTAAGTTATAAAACTGTTTATTGCTTTATTGTCTCAG  2960

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2961  CTCAAAGGTGAATAACAAAACCCCAAGCATATGTCAGCCTTGGAAATTTAGTATTGACCTTCCTGGGCCCTCAG  3034

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3035  TGCCTGCTCATTTCCTATACCTAGCATTTACGTTTCCAATGCTTCATCTACACCTTCATTCACTACTACCTATA  3108

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3109  TGTCATTTGCCTTATTATCTATGGTACGTATACTGAGTTCTAGTAAAATAGTATTTCAAGTGCAAGTTTACACA  3182

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3183  TTCCTTATATTAACTTTAATTCAATACTTGCCATTTCTTTTTTGCTTCAGAACCAGGAGTTGAAAATATTTCCA  3256

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3257  TTTGTCTTTTAAAGAGGTTATAAAATTGTCACAAGGACATGGGACATGCTGGCTATTTTTCCCTTTTTACTATT  3330

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3331  TTATAGCATCCAATTAGGTGGATAATAAAATTCTTATTTTTCCAATGAGTAGTCCAAGACTTCACGAATAAAAG  3404

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3405  TACCATGCTTAATGTCACACTACTAACAAGCGGCAGGACCAGTGTTTAAATGTAAATATATCTTATTTCAAAAT  3478

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3479  TTGTTTGTTTTACCAAATTTTGTAGCTCCTTCCAAGACTCCCAACCTTCACCTTTTCTTTCTATCCCTAAGAAT  3552

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3553  ACATATGATTTTCACATACGAAGTTCGTTTATAACCTTTTGCTAATTAATTAGTGAAAAAAGATGCAATGAATT  3626

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3627  TTGCAAAATGTCATGCAAAAAATGAAGCAGGAACAGACAATTAGGAAATATTAAACCATGGTTAGTAGCATTGC  3700

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3701  ATATCAGCATTGGTTTGATTGTAATTTCATTGTTCTGGACTCTCGCTTGTTTAGTTGGTGTCCCTGAGGCCTGC  3774

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3775  AGTCCTTCCAGGTGCTGAGAGTGGAGCTTCCCAGGCCTTCATCCTCTCCAGGACCTCAACCTTCCTCGTTCCAT  3848

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3849  GTACAGACATAGAGCCCTTTCCACTTCCTTTTTGTAAGAAATAGTATTCTTTCCCACAGATGTCCAGCTCACAC  3922

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3923  CAGCCTGCTGCTTGCCTTTCACTGACCCCTTCGATGGATGCTACGGACTTGGATCCACTGCCAAGGAAACACGT  3996

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3997  CACAGAGCAGTGTGTGGTTGGCATACTAAGCTCCACCAAGAAAGAAGACATCACCCAGAGTCATGCTGTATTAT  4070

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4071  CCAGAATACTTATGTGTCTCCATACCAGAGATTGACCACCCAAACTTCTTCATTTATAAAAAGCTTCTCCAAGT  4144

Query   73  -----------------------------------------------------------------  72
                                                                             
Sbjct 4145  ACTTGATTGCTTGAAATTGGACTATAGTAGCTTCAAGAAACACTTATAAACATTAGCCAATTACA  4209

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.