Nucleotide Global Alignment

Description

Query:
TRCN0000492083
Subject:
XR_001742759.1
Aligned Length:
5525
Identities:
64
Gaps:
5453

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CTCCTGGGCTCAAACAGCCCTCCTGCCTCAGCCTCCCGAAATGCGGGGATTATAGGTGTGTGCCATCACACCGA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GCTTCAAGTGTATATTCTGCATTTATCTTTTTCATGTTATAGCCCTTAATTATAAAAATTATTTTTGCATAGGT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TGCATACCATCATTTTCCTTATCTTTGAGTGGGGACAGTTCTGCATAGACTGATATTTGCCCAGTGTAGTAAAA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CCACACAAGCAGAAAAAGAGGCTCTTGGCAGCAGGAGAGTATGGGGGAAATCACAGAAAAGAGGAAGCTCAAGG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  AAAAGTTCCTAAAAAGCTGTGTATAAAGTCCTTGGCTCCACCCCCAGCTGCTCATGCATGGAGCTGACCCAAAG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CAATATACCAAAGGCTCTGAGAACTGGCTGTGGTGTAGACTACCACCAGAATGACCACCTGGGTGATGCACATG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TGAGGCAGATCCAAGTAGCACTGCAAAACCTTTGGAAACTGAAGTGACACTAAAGCCACAGCTTACTAAAGGTA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TGTCCAAACTTATGATCTGAACCAACCAGGTTAATTGGCAGCTAAAACAACAAAGTAAACATTCACCAAAGGAC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TTTAACAAGACTCAGAGACTTGTAAAATATATGTAACATTCAGGAATAATCTAAAATTGCTCAACATATAAGGA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  ACCAGGAAAATCTCACCAACTTGCAAGAAACAAGCCAGTCCCAAAATGATTCAGATGTTAAACCTATCAGACAG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TGACTTCAAAGCAGCTATTACAGCCAAGTTCCAGGTATAGCTACTCACAGGTCTGAGGTGGAAGGATCACTTGA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GCCCAGGGTGTCAAGGCTGCAGTGATCCTTGATCATGCTACTGCACTCCAGCCTGGGCAACACAGTGAGACCCT  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  GTCTCAAAAAAATTAATTAATTGATTGATTAATTAAAAAAGGAGTTCAGACTTTAATTTCCAGTTCAGATGGAG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  TAAGCAGCACATATCACTTTATCTTTCCCAAAGATTACAACCAAAAACCCTTGAAAGAAAACACAACTAGGAGT  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  CTGAAAAGTACATAATAGCAATAAGAGAGCAGTAAGAAGAGAGAACACTCTTGAAATGAAAGAAAAATTATCTG  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  CAGAAAAATAGAAGCTACAAGAAAGTGCCATGGGGAGTGGGGAATGGAGAGTTGTTGAATGGATATGGAGTATC  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  AGTTTTGCAAGGCAAGAAGAGCTCTAGAGACTGCTTGCGCAACAATGTGAATGTACTTAACACTACTGAACTGT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  ATACCAAAAATGGTTAAGATGGTAAATTTTATGTTACATGTATTTTACCAGAATAAAACTAAATTGGTATGTAC  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  TTACCTAGAAAGATGTTCATAATATAGTTCTAAGTAAAACTAAATTATGTTTCACAGTGAAGGAAGGGAAAGAA  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  GGCAGGAAGGAAGGACAAAGCGGTTATGTACAAACTGAAAACTACATAATTGAAATTAAAACCTTTGCTGGATG  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  GACTCATTTGCCGAATGGAAATGATAAAATAGTGATCTTAAAAGGTCAAGATCAAGATATATTATCCCATTTGA  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  AACAGAGAGGAAAAAAGATTGAAAAAAATAACAGACTTGCATACCTGTGGGACAATATCAGAAAGATTAACATT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TATGTCTTTGGTGTCCCAGATCAGGAGGAAGATACTGCTGCAGATGAATATTGAAAAAAATAAAGGATAGAAAC  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  TTTAAAATTTGGCAAAAGACATGAATGTAAAGATTCAGGAAGTTCAGGAAACCCCCCAAACAAGATACACTAAA  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  ATCAACAACAACAACAAAAAAACTACATTGAGATGCATCCAAATTTACTTGCTGAAAATTAAAGATTTTTAATT  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  GCTGAAAAATTTTAAAATGTGGGCAGGTGTGATGACTCATGCCTGTAATTCCAGTACTTTGGGAGGCCAAGGCG  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  GGCAAATTGCTTGAGCCCAGGAGTTCAAGACCAGCCTATGGCAAAGCCCCCATCTCTAAAAAAAAAAAAAAATA  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  CAAAAATTAGCCAGGCATGGTGGTGCACACCTGTAGTCCTAGCTACCTAGGAGGCTGAGGTGGGAGAATTGCTT  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  GAGCCTGGGAGGTGGAGGTTGCAGTGAGCCGAGATTGTGCCACTGCACTACAGCCTGGGCGACAGAGTGAGACA  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  CTGCCTTAAAAAAAAAAATTGAAAAAGAAAAATGACACATTACATATATAAAGGCGAAATGACTAAAATGACTG  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  GATTTCTCATCAGAAATCATGGCGGTCAGAAAGCAGTAGAACATTTTTTTGATGCTGAAAGTAAAGAAGTGTCA  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  ACCCAAAATTCTATATTCTGTAAAATTTTCCTCAGGAATGCAGGCAAAATAATTCCTTCCCAGAAGAAGGGAAA  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  ATAATGCAGCTGCACTAAAAGAAATGCTAAAGGGAATTCTTCAGGTGGAAAGGAAGTAATACCAGAAGGAAACT  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  CAAAACTTCAGGAATGAAAGAAGAGCAACAGAAACAGTAAATATATGGATAAATATACTTTTTACTCTTCATAA  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  TTTCTTTAAAATATGTATAATGGGTGCAAGCAAACACTGTAACATTGATGGTGGGATTTTTGGTGTATGTAGAT  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  AATAATACACATGACAACTGCAACATAAAGGGTGGAATGTAAAAGGACCTGTATTGTTGAAAGTTCCCCACATT  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  TTATTTGAAATGATAAAATATTCTTAGCTGGTTTTAAAAGTTAAATACATATATTGGAATCCTTAATCATTAAG  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  AATATTATTAAAAGTATATAGTTATTTTTGGCCAGGCGCAGTGGCTCACACCTGTAATCCTAGCACTTTGGGAG  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  GCCAAGGCAGGTGGATCATGAGTCAAGAGATCGAGACCATCCTGGCCAACATGGTGAAACCCCATCTCTACTAA  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  AAATACAAAAATTAGCTGGAGGTGGTGGTGCGTGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAAGAAAAC  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  TGCTTGAACCCAGGAGGCAGAGGTTGCAATGAGCCAAGATCATGCCTTTGCACTCCAGCCTGGTGACGGAGCGA  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  GACTGTCTCAAATACAAAAACAAAACAAAAAATATATACAGTTATTTTTAAAGCCAAGAGATAGAAAACCAAAA  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  GATATTCAAATAATTCAAAAGAATCCAGGAAAGAGCCAGGCACGGTTGTTCATGTCTGTAATCCCAACAGTTTG  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  AGAGGCCAAGGCAGGCAGATTCTTTGAGCCCAGGACTTAGCAGCCTGGGCAACATGGAAAGACCCCATCTCTCC  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  AAAACAAAATATTAAAAAATTAGCCAGACATGGTGATGTGTGCATGTAGTCCCAGCCACCCAGGAGGCTGAGGC  3330

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3331  AGGAGGATTGCTTGAGCCTGGGAATCAGAGGTTGCAGTGAACAGAGATCATACCACTGCACTCCAGCATGAGCA  3404

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3405  ACAGAGCAATTCCCTCTCTCAAAAAAAAAAAAAAAATTCAGAAAAGGAGAAAAAGGAATGAAGAAAAAAAGGAG  3478

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3479  AAAAACAGAAAACAAATAATAGAATGATAGATCCAACTATATTAACAGTTACATTAAAGGTAAATGTTCTAGAA  3552

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3553  ACACCATTTAAAAGCCAGTTTGTCATTTTGGTTAAGAATACAAGACCCAACTATATGCTATATATTAGAAGTCC  3626

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3627  ACTTTAAATGACGTAAGTATGTAAAAAGTAAAAGGATGGAGAAAGATATACCATGTAAAGATTGGCTGAGCACA  3700

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3701  GTGGCTCATGCCTGTAATCCCAGCACTTTGAGAGGCTGAGGCGGGCAGATCACCTGAGGTCAGGAGTTCGAGAC  3774

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3775  TGGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAAAAAAAAAAAAGCCAGGTGTGGTGGAGGGTGCCTC  3848

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3849  CATGAGAGGCTGAGGCAGGAAAATTGCTTGAACCCAGGAGGCTCACTAGCCAAGATCCTGCAACTGCACTCCAG  3922

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3923  CCTGGGTCACAGAGTGAGACTCCATCTCAAAAAAGAAAAGATACACCATGTAATGACTAATCAAAAGGAAGCTG  3996

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3997  GAATGGGTATATTAATCAGATAAAATAGACTTCAGAACAAGGAAAATTAACAAGTTTGTAGAGGTAAATTGCAT  4070

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4071  ACTAATAAAGTGGTCACTCAAGACATAATAATTCTGTATGTATGCAGCTAACAACAGAGTGTCAAAATACTGTA  4144

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4145  CATAAAACAAAAACTAATAAAATAGGAGAAATAGATAATTCTGCAATTATAGATGGGAATTTCAGTTTTCCTCT  4218

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4219  CAGTAATCAATAAAGCAAGTAGACAGAAAATCAGCAAGAATGTAGAAGGCTGGAAAACCATTAGCCAAAAAAGA  4292

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4293  AAATTCCAGGCTCAGATTTAAGGAATAAATAAGACCAATTCTATACAATCTCTTACAGAAAATAGAGGAGAAAG  4366

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4367  AAATAATTTGCAACTCATTTTAAGAGCCAGCATTACCCTAACATTACTAGAGAAAGATATTTCAAAAATAAGAT  4440

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4441  CAATATCTTGAACACAGACGCAAAAATCCCCAACAAGATATTGACAAATTGAATACAGCAATATATAAATAAAA  4514

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4515  TTTTCTTTCAGGAATGCAAGGTTGTTCCCACATTTGAAAATCAATGTAGTCCACCATATTAACAGATTGAAGCA  4588

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4589  TAGAAACATGATTTTATGAATAGATGCAGAAAACCCATTTGACACAATTCAACATCCATTCTTTTTATTTATTT  4662

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4663  TTTTAAGACAGGGTCTCACTGTAGCTCAGTCTGGAGTGCAGTGGTGGCAATCACGGCTCACTGCAGCCTGGACC  4736

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4737  TCCTGGGCTCAAGCAGCCCTGCCTCAGCCTCCTAAGTAGCTAGGACTACAAGTGCCCACCACCATGTTTGGCCA  4810

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4811  ATTTTATAACTGTTTATAGAGACAGGGTCTCACTGTGTTGCCCAGGTTGATCTTGAACTCCTGGGCTCAAGCAA  4884

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4885  TCCTCCCGCTTCAGCCTCCCAAAGTTCTGGGATCACAGGCATGAGCCATTGTGCCCAACCTCTACATTCTTTAT  4958

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4959  TGATAAAACTCAATGGAATATGAATACAAGAGAACTTCCTTAATTTAATAAATTGAACTATAAAAAAAACTTGG  5032

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 5033  CAGCTAACATAATTCTTTTTTTTCTTTTTTGAGATGGAGTTTCACTCTTACTGCCCAGGCTGGAATGCAATGGT  5106

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 5107  GCGATCTCAGCTCACCGCAACCTCCGCCTTCCGGCTTCAAGCGATTTTCCTGCCTCAGCCTCCTGAGTAGCTGG  5180

Query    1  ---------------------------------------------------ATGGGGTTTCTCCATGTCGGTCA  23
                                                               |..||||||||||||||.|||||
Sbjct 5181  GATTACAGACATGCGCCACCATGCCTGGTTAATTTTGTATTTTTAGTAGAGACAGGGTTTCTCCATGTTGGTCA  5254

Query   24  GGCTGGTCTGGAACTCCTGACCTCAGGTGATCCGCCCACCTCAGCCTCC-------------------------  72
            ||||.||||.||||||||||||||||||||||.||||||||..||||||                         
Sbjct 5255  GGCTAGTCTTGAACTCCTGACCTCAGGTGATCTGCCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGA  5328

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5329  GCCACCGCGCCTAGCCGCTAACATCATTCTTAATGGTGAAGGGCTGATTAATTTGCCTAAGATTGGGAAAAAGG  5402

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5403  CAAAAATGTTCTTAGCATTTCTGTTTAACATCGTGCTAAAAGTCCTGGCCACTGTGATGAGGCAAGAAACAGAA  5476

Query   73  -------------------------------------------------  72
                                                             
Sbjct 5477  GTAAGAGGCATACAGATTGGAGAAAATAAAACAGAACTTTCTCTATTCA  5525

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