Nucleotide Global Alignment

Description

Query:
TRCN0000492083
Subject:
XR_001749938.2
Aligned Length:
5412
Identities:
64
Gaps:
5340

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GAGTTTTGCTCTTGTTGCCCAGGCAAGAGTACAATGGTGCAATCTCTGCTCACTGCAACCTCCGCCTCCCAGGT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TCAAGCGATTTTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGTGCCACCATGCCTGGCTAATTTT  148

Query    1  ---------------ATGGGGTTTCTCCATGTCGGTCAGGCTGGTCTGGAACTCCTGACCTCAGGTGATCCGCC  59
                           ||.||||||||||||||.|||||||||||||..|||||||.||||||||||||||||||
Sbjct  149  GTATTTTTAGTAGAGATTGGGTTTCTCCATGTTGGTCAGGCTGGTCCTGAACTCCCGACCTCAGGTGATCCGCC  222

Query   60  CACCTCAGCCTCC-------------------------------------------------------------  72
            |.||||.||.|||                                                             
Sbjct  223  CGCCTCTGCTTCCCAAAGTGCTGGGATTACAAGTGTGAGCCACCGCGCCCAGCCGGAATTACATTTTTTTTTTA  296

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct  297  AAAGCGTTTTGTATCATTCTGCTAATTCACAGTAGATTGCAAATATGCAACATTGTTATTTCAATTTTTTTCTA  370

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct  371  TGAATCTGAACAAAATCATACGTAAAAAACTTCAATGTGAGTTTTAATTTCTTAATTTTAAAAAACCAAACCAC  444

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct  445  AATTTTACTATTTTTGCAAGAAAGATAAATCACATAAGACTTACCTATACAAATAATTCAACTATAAATTTACC  518

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct  519  TTTTTACAAATTTTCTTCTTTGGAAGCAGCAGATATGTAAAATCATTACATATTATGTTCATGCTGTATGTACA  592

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct  593  TAAAATGGACTACAGACCCCAAAAGTAAATTCTTTGGAGATTTGGTTCCAAAGAGGGAAAACAAACCCTCTTTG  666

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct  667  TCTGAGTATGTGAAAGGTACCAAAAAAGAGTGAAAACCAGTTTTCCTCTTTTTTTTTTTTCTTTACTCTTTTGT  740

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct  741  TTTTGTAGGAGAACCAGCAGTGGAAGAAAAGATCACTTCCTTTGTAGACACTTTATGGGTTTCGGATTCTGTAA  814

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct  815  ACTCTGGCACATAACTTGACCCCAAAGTTAATGAAATCCTGTTAGACTTTCCCTGCCCTCCTTCCTGCTTCCAT  888

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct  889  CCTTCAGATTATCTCACGTTTTAAAAATTCAATTTCTATTTGTATACACGTGATCTTCATGTCATTGGCTTTTT  962

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct  963  ATGCAGACACATTTCACCTACATCCTTTCCTTCCCTCATCTGGCAGCCAGTTGAGCTTCTTCCTGCCTTGAATA  1036

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1037  CCACATTCCCTAGTTCTTCAAGCTCAGTCATTAGCACCCTGTCCCCCTACTAAAATTATGAATGAAAAGCCTTG  1110

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1111  TTGTTCTTTACAAATAACTCAGGCTGCCTCAGTCAGTCAAATTCGAATGGAAGTGACTGCCAGACAAAGGGGCG  1184

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1185  GGATGATGGACAGTGCTCACAGCAAGTCATCAATGCCCACAGGAAGTTTTTTAAGCCACAGTATAGGTAGAGAG  1258

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1259  GCTTGGGCGTTCCCAGAGGACAAGCTTACAGAAGGAGGCTGGGAGGTGGGGGGAGGGGGACTTTCTGTGTCTGT  1332

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1333  TTGGAACTTAGAAAAAACTTCCATGAAGCTCAGAGATAACAATGTACAGAGTCAGTTTTGCCCTACCAAGAACT  1406

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1407  TAAAAATCCAGCCGTGGAGACATCTACACCTTGCAGTAATTCTGGTTTGCACCGACACACACAGACAAAAGTGA  1480

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1481  AGGCACCAACCATTTACTTGGTTTTGAATGCTGAACGGTGCAAGGGTGGCTTACATACTTGGAGCTGCACAACT  1554

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1555  CCCTGCTGAGAAGTTGCATTGTCTTGGGCCCCTCTTTCACAACAGGGGAAAAGGTAATTGACAGCCCGATTGTT  1628

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1629  TGGCTGGGACCCCTGCTGTTTTAAAATCCTAGAAGGCCCCAGTCACACGTTGTCAATAATAGCCGTCGGAGGTG  1702

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1703  AGGAGTGAAGAAGGGCTGTTCAGGAAACAGTTTGAGCCCTTCAAGTGGACAGGCCTCAGTGACTTCTGCACTCT  1776

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1777  GGCTCCCACAAGCAGCTCATTCAAAAATAACCTTAAAGTAATAAATCAAACTTGTTTCCTGAACTATACAAGGA  1850

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1851  ACAGCTGGTTATTTTTCCTCACTTTTTTTTTCCAAAAGCCAAAAAAAAAAAAAAAAAAAAGAATGAGATTTTAC  1924

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1925  TACAGGAAACCAAGCATGTCAAAATTTGGCAAAGCAATTTGGATGATTTAACAGTTAAACACTTCTCTTTTTAA  1998

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1999  TGTTATGCTTTCATCAGTCTTTTTTATTTAAGCTTTTCAGTTTTGCATTCTGTTTGCTGCAATTAGTGTCCCTT  2072

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2073  ATCTGTTCACTCCCTACTTTTGAAAGGAAAATGAGTTTAGGATCCTGTCTTTAGAGTATTTTGCTGTGTAATTT  2146

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2147  CTAATGTACTGGTCAAGTAGCTCAACTTATTTTACAGGTAAAATTTGTTTTCTTCCACAGAGTTGAGTTTGGAT  2220

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2221  TTAGATCTACAGCTCCACATATTTGTTTCTCCTGAGACCCATATATTTTGGAGTTCTGATGACAAGGCAGTTTT  2294

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2295  TCTTTAGTCTATTGATTTAGGAACCCTGACCTAGGAGTGCATATGCTGTAACTGAAGTAGTCTGGTGCTTTAAC  2368

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2369  ATTTTCAGCTTCAAACATGTGCTACCTGACTAGATGGAATTCCTTGAGAACTGTATTAACATGTTTCAAAGAGT  2442

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2443  TGAATTAACAGATGGAGTTTCGCTCTTGTTGCCCAGGCTGGAGTGCAATGCTGCGATCTCGACTCACCGTAACC  2516

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2517  TCCGCTTCTGGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCAAGTAGCTAGAATTACAGGTATGAGCCACCAC  2590

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2591  ACGCCCGGCCAGTATTGTGAGTTTTAAAGAATGCATTTTAATATGTTTCACTTTTTAAAGCTCCTAAGTGGTTT  2664

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2665  TGTTGCTAATTTTTTTAAATTTTGTTTTGTGAAGAGATTGGTAACATAAATTGTAAAGCAGAAATTAATTCACC  2738

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2739  TAGCTTTCCTCATCACAGTTTAAGACGGATATTTGTGTTCTGGTTTGCTTATTTGTTTTTCCGGGTCCACACAT  2812

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2813  TCACTCATATGTGTTTAGATTTTTCATGTGGAAGGCAGTGATATAATTTCAGGCCTATATGTTTTGACCCTCTG  2886

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2887  TTCACACATGGTTGTTATATGCCCTGACATTGTGTTTACTTCACATTTCCTATTTTTCCACTGTATATCTGAGG  2960

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2961  ATATTTCATGCTATTTTGTTACCTAAAGAGAGGCTACTGCTACATGGGGAGACATATATACATATATGTAGGAG  3034

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3035  TACACCTATGTGTGCATGTGTGTGTATTTATAAATCTCTCTCCATGTAGCAGTACACATATATATATGTATATA  3108

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3109  TAATTTGTTTTTATGAGAAGGATGTGAAAAGATACACAAGTCTGTTTATAATACAGATCTGAAGGAGAGATAGG  3182

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3183  CAAATATTGATTTAAAAAAAATTTCCCCTGATTTGTTTCACTTTGTACAACAAACAGGTATTACTTTCTTAATT  3256

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3257  AAAAACATCAATAAAAAATGTTTCAATACTGATTAAAAACAGTTAAAGAGGAAATTTAACAGTGGCAAATAATA  3330

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3331  TCTGTATTTTATAAGGGTTTTGCCAGTCTTGACAAAGTATCTAGAAATTCGCTAAAAGACAGTTTCTTTTGTTT  3404

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3405  TTCAGAGCACACATTAAAAAAAAAAAAAAATCGCAATGATTAGTGCTCCCTCTGCTGGTTTCCCTGCAACAGTT  3478

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3479  TGTTGCGGTGATTTGGGAGGATGAAAAGACAGCAAGGAAAATTCTGTTACTTTTGGTCTTTAAACATTATTTCT  3552

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3553  ATATACAAGTGTTATCCTTGATTGGTAGCAAATGCCAATGTAGTTTCTGAAAATTTATTCTTTCTTAAAATTCA  3626

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3627  ATAGTGATTCTGAAGTTGGGCTAGATAATTATAATCCTTTTAAAATTAATTCCTCCTTTCTTATATCATGAAGC  3700

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3701  AGGACATAAAGCATAACAATTCTTATTTATTGGGATTTTTCTTGGGTAGGAGTTAACCTTATATAGCTAACTCT  3774

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3775  CAGTAACTTGACCTAGCAGTAGTAAAGTTGGCTATTTGAACATCAAGCTGACACTCTAGTAAGCAAAATAGAGG  3848

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3849  TTTGGAGTGACATTATCACTGGAGAATTACATTCTGTAATTGAACACTTTGCTGTATCATTATTTTAGTCTACA  3922

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3923  TCATCCTATGTGAAAGATATTTGGAAATTGCATAGTTGATTTAATTTATCTTGATATCCATACTATAATTAAAG  3996

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3997  ATTCTTAGAATTCATTGGATTCATCAATTTGCTCTCTGTGAATTTGTACTTTCATGAATCAGAGTATGTTGATC  4070

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4071  CATATACAGTGTTCATTTAACTAATACTTGTATTAAATCACTTCTAAATGCTTATTATACCCTGTATTATAGTA  4144

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4145  TTATATTCTGAGTCTTAAAGGTGCTTAATGTGAAGATTCTCTCTCTACATATTCAACTCTTACTAACTTTTGGC  4218

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4219  TTTAGGTAGAAATCAGTTAGTGTATTATATGATAAAATAGGAAACTATTTCCCTAGGGGTATAGGTATTCAGTA  4292

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4293  GGGAGCTTTGGAGTCTCAATGAGCTTCTTAAAGAAGCATTTTTAATGGTAGGTTTTAGGGAGAGTTTTTGTAGT  4366

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4367  AAGATAAAGTAGATGAGAAAGTGTTGCCTCTAAACAATCAACAAGCTGGGAATGGGGTGCAGAATGAGGAGAAC  4440

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4441  CCTAAGCAATAGGCAATAAGGAGTGAAAGGAAGGAGGTGTCACTCATTGGGAAAGAAAAGGAACTGTATGTCCT  4514

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4515  CTACTGAGAGCTGCTGTCTTCTTAAAAGTCATTTTTGTGAGGTGTGCTTGCGGAATGGTAAAACAGAAAGGAAA  4588

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4589  TAACAGAGTAGAAGGTCAGATCTCCCAAATCAACCTTACTCATCACTGGTGTGCAAGATACCATCATCAGATCA  4662

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4663  TTTTAACACTCTGGAAAATACCACGGAGAGGTTTAGCAAGTGACAATTAACATCAGGGAGAAGCAGTTTCTAAT  4736

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4737  AAGGAGATCCAGCCATTGCTGCTGGAGTTTAGATGTGGAATTTCTAGGCTCTGGAAAGTGTAGAGGCAGAAATG  4810

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4811  AGGTGATTACTTTCCTCTCCATCATAAGCATTATGGCTAACACCCCTATAACAAAGGCAGGTTATCAAGAAAAA  4884

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4885  AGAATAATACATTTATTTAAGCACAGTTTGATATGATATGGGAGGCTTCAGAATGAAGACCCAAAGATGCAGGG  4958

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4959  AAAATTGTTGCGTTTTATGCTGATGTTCAATGAAGTATGGATAGCCATATAAAATATGATTGGACAAAAAGGAT  5032

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5033  AAAATCTAATGCTTTGATGCTAATAGACAGAGTCAGGAAACTCGGCAAAGCCTGTCCAGATTTTTCTTGGTCTT  5106

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5107  TCTGTACAGCATTATTTTGTTGACAAAAAAAGCCAAACTCTGTAAGATATTTGAAGAGGTTTATTCTGAGCCAA  5180

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5181  ATATGAGTGGCAGGGCCTTTGACACAGCCTCAGGAGGCCCTAAGAACATGCACCTAAGAGGATTGTGTTACAGC  5254

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5255  TTGGTTTAATACATTTTAGGGAGACAGAAGTTATAGGCATGTAAGGTATACATTGGTTTGGCCCAGAAAGGTGG  5328

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5329  GACATCTCAAAGTGAGGGGGGAAGGTGGGGAAGGGGAGCTTCTTCGTCATAGATGGATTCAAAGATTTTCTGAT  5402

Query   73  ----------  72
                      
Sbjct 5403  TGACAATTGG  5412

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.